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The role of DNA replication machinery in maintenance of DNA methylation

Research Project

Project/Area Number 24790290
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field General medical chemistry
Research InstitutionNagoya City University

Principal Investigator

NISHIYAMA Atsuya  名古屋市立大学, 医学(系)研究科(研究院), 講師 (50378840)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2013: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2012: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
KeywordsDNAメチル化 / ユビキチン化 / DNA複製 / 試験管内系 / クロマチン / Trim28 / Dnmt1 / Uhrf1 / PCNA / ヒストン / ユビキチン
Research Abstract

Faithful propagation of DNA methylation patterns during DNA replication is critical for maintaining cellular phenotypes of individual differentiated cells. However, it is unclear how the maintenance of DNA methylation and DNA replication is coordinated. Using Xenopus egg extracts, we successfully reproduce maintenance DNA methylation in vitro. We found that Uhrf1 has an activity to ubiquitylate histone H3. Dnmt1, which converts hemi-methyl DNA to full-methyl DNA, preferentially associates with ubiquitylated histone H3 in vitro through a region previously identified as a replication foci targeting sequence. We also show that ubiquitin ligase activity of Uhrf1 is essential for Dnmt1 recruitment to DNA replication sites and maintaining DNA methylation in mammalian cultured cells. Our finding represent the first evidence of the mechanistic link between DNA methylation and DNA replication through histone H3 ubiquitylation.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (16 results)

All 2014 2013 2012

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (14 results) (of which Invited: 2 results) Book (1 results)

  • [Journal Article] Uhrf1-dependent H3K23 ubiquitylation couples maintenance DNA methylation and replication2013

    • Author(s)
      Nishiyama, A
    • Journal Title

      Nature

      Volume: 502 Issue: 7470 Pages: 249-253

    • DOI

      10.1038/nature12488

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Presentation] Regulation of DNA methylation-coupled histone H3 ubiquitylation2014

    • Author(s)
      Atsuya Nishiyama, Luna Yamaguchi, and Makoto Nakanishi
    • Organizer
      Replication, repair and transcription; coupling mechanisms and chromatin dynamics for genome integrity
    • Place of Presentation
      京都
    • Year and Date
      2014-02-05
    • Related Report
      2013 Final Research Report
  • [Presentation] Regulation of DNA methylation-coupled histone H3 ubiquitylation2014

    • Author(s)
      Atsuya Nishiyama, Luna Yamaguchi, Makoto Nakanishi
    • Organizer
      Replication, repair and transcription; coupling mechanisms and chromatin dynamics for genome integrity
    • Place of Presentation
      京都大学時計台記念館(京都府)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Uhrf1依存的なヒストンH3のユビキチン化を介したDNA維持メチル化制御機構2013

    • Author(s)
      西山敦哉, 山口留奈, Jafar Sharif, 城村由和, 川村猛, 中西圭子, 島村真太郎, 有田恭平, 児玉龍彦, 石川冬木, 古関明彦, 中西真
    • Organizer
      第36回分子生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2013-12-06
    • Related Report
      2013 Final Research Report
  • [Presentation] ヒストンH3のユビキチン化とDNA維持メチル化制御2013

    • Author(s)
      西山敦哉
    • Organizer
      平成25年度遺伝研研究会 「クロマチンによる遺伝情報のエピジェネティック制御機構」
    • Place of Presentation
      三島
    • Year and Date
      2013-10-18
    • Related Report
      2013 Final Research Report
  • [Presentation] ヒストンH3のユビキチン化とDNA維持メチル化制御2013

    • Author(s)
      西山敦哉
    • Organizer
      平成25年度遺伝研研究会「クロマチンによる遺伝情報のエピジェネティック制御機構」
    • Place of Presentation
      国立遺伝学研究所(静岡県)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Uhrf1依存的なヒストンH3のユビキチン化を介したDNA維持メチル化制御機構2013

    • Author(s)
      西山敦哉、山口留奈、Jafar Sharif, 城村由和、川村猛、中西圭子、島村真太郎、有田恭平、児玉龍彦、石川冬木、古関明彦、中西真
    • Organizer
      第36回分子生物学会年会ワークショップ「タンパク質翻訳後修飾を介した超分子複合体形成とゲノム機能制御」
    • Place of Presentation
      神戸国際会議場(兵庫県)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Uhrf1依存的なPCNAのモノユビキチン化を介したTLSポリメラーゼとDNA維持メチル化の関わり2012

    • Author(s)
      山口留奈, 西山敦哉, 城村由和, 島村真太郎, 石川冬木, 秋山昌広, 真木寿治, 中西真
    • Organizer
      第35回分子生物学会年会
    • Place of Presentation
      博多
    • Year and Date
      2012-12-11
    • Related Report
      2013 Final Research Report
  • [Presentation] ヒストンH3のユビキチン化を介したDNA維持メチル化の監視機構2012

    • Author(s)
      西山敦哉, 山口留奈, 城村由和, 島村真太郎, 石川冬木, 川村猛, Jafar Sharif, 古関明彦, 中西真
    • Organizer
      第35回分子生物学会年会
    • Place of Presentation
      博多
    • Year and Date
      2012-12-11
    • Related Report
      2013 Final Research Report
  • [Presentation] Implication of TLS in maintaining genome integrity under defective maintenance DNA methylation through Uhrf1-dependent PCNA ubiquitylation2012

    • Author(s)
      Yamaguchi L, Nishiyama A, Johmura Y, Shimamura S, Ishikawa F, Hanaoka F, and Nakanishi M
    • Organizer
      The 8^<th> 3R Symposium
    • Place of Presentation
      淡路
    • Year and Date
      2012-11-25
    • Related Report
      2013 Final Research Report
  • [Presentation] Uhrf1-mediated histone H3 ubiquitylation couples DNA methylation with DNA replication2012

    • Author(s)
      Nishiyama A, Yamaguhi L, Johmura Y, Shimamura S, Ishikawa F, Sharif J, Koseki H, and Nakanishi M
    • Organizer
      The 8^<th> 3R Symposium
    • Place of Presentation
      淡路
    • Year and Date
      2012-11-25
    • Related Report
      2013 Final Research Report
  • [Presentation] Uhrf1-mediated histone H3 ubiquitylation couples DNA methylation with DNA replication2012

    • Author(s)
      Nishiyama A, Yamaguchi L, Johmura Y, Shimamura S, Ishikawa F, Sharif J, Koseki H, Nakanishi M
    • Organizer
      The 8th 3R Symposium
    • Place of Presentation
      Awaji Yumebutai(兵庫県)
    • Related Report
      2012 Research-status Report
  • [Presentation] Implication of TLS in maintaining genome integrity under defective maintenance DNA methylation through Uhrf1-dependent PCNA ubiquitylation2012

    • Author(s)
      Yamaguchi L, Nishiyama A, Johmura Y, Shimamura S, Ishikawa F, Hanaoka F, Nakanishi M
    • Organizer
      The 8th 3R Symposium
    • Place of Presentation
      Awaji Yumebutai(兵庫県)
    • Related Report
      2012 Research-status Report
  • [Presentation] ヒストンH3のユビキチン化を介したDNA維持メチル化の監視機構2012

    • Author(s)
      西山敦哉、山口留奈、城村由和、島村真太郎、石川冬木、川村猛、Sharif Jafar、古関明彦、中西真
    • Organizer
      第35回分子生物学会年会
    • Place of Presentation
      福岡国際会議場(福岡県)
    • Related Report
      2012 Research-status Report
  • [Presentation] Uhrf1依存的なPCNAのモノユビキチン化を介したTLS ポリメラーゼとDNA維持メチル化の関わり2012

    • Author(s)
      山口留奈、西山敦哉、城村由和、島村真太郎、石川冬木、秋山昌広、真木寿治, 中西 真
    • Organizer
      第35回分子生物学会年会
    • Place of Presentation
      福岡国際会議場(福岡県)
    • Related Report
      2012 Research-status Report
  • [Book] エピジェネティクスキーワード事典2013

    • Author(s)
      西山敦哉, 山口留奈, 中西真
    • Publisher
      羊土社
    • Related Report
      2013 Final Research Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

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