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Identification of genotype of hepatitis C virus using high-sensitivity in situ hybridization

Research Project

Project/Area Number 24790367
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Human pathology
Research InstitutionFujita Health University

Principal Investigator

SHIOGAMA Kazuya  藤田保健衛生大学, 医学部, 助教 (10387699)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2013: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2012: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsin situハイブリダイゼーション法 / C型肝炎ウイルス / locked nucleic acid / ビオチンフリーチラミド増感法 / ヒト肝臓型HCV感染キメラマウス / HCV / in situ hybridization / AT tailing / HCV genotyping / nested RT-PCR
Research Abstract

We were successful to detect HCV-RNA in formalin-fixed, paraffin-embedded sections of liver by using high-sensitivity in situ hybridization (ISH) combined with LNA-modified oligonucleotide probe and biotin-free tyramide amplification system (CSAII). HCV-RNA was demonstrated in HCV-infected liver tissues from both chimeric mice and 9 (82%) of 11 patients with HCV infection. HCV-RNA was not identified chronic hepatitis B, fatty liver, autoimmune hepatitis, and hepatocellular carcinoma. Nested RT-PCR confirmed the genotype in 8 (73%) of 11 liver (type 1b: 6 lesions and type 2a: 2 lesions). HCV genotyping could be detected by nested RT-PCR, while high-sensitivity ISH technique occurred cross reaction among the HCV genotypes.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (13 results)

All 2014 2013 2012 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (6 results) Remarks (1 results)

  • [Journal Article] Demonstration of Hepatitis C virus RNA with in situ hybridization employing a locked nucleic acid probe in humanized liver of infected chimeric mice and in needle-biopsied human liver2013

    • Author(s)
      Shiogama K, Inaka KI, Kohara M, Teramoto H, Mizutani Y, Onouchi T, Tsutsumi Y
    • Journal Title

      Int J Hepatol

      Volume: 249535

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ono S, Kodashima S, Fujishiro M, Tsutsumi Y, Ichinose M, Koike K. Cathepsin E is a marker of gastric differentiation and signet-ring cell carcinoma of stomach : a novel suggestion on gastric tumorigenesis2013

    • Author(s)
      Konno-Shimizu M, Yamamichi N, Inada K, Kageyama-Yahara N, Shiogama K, Takahashi Y, Asada-Hirayama I, Yamamichi-Nishina M, Nakayama C
    • Journal Title

      PLoS One

      Volume: 8 (2)

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] High-sensitivity epidermal growth factor receptor immunostaining for colorectal carcinomas, compared with EGFR PharmDxTM : A study of diagnostic accuracy2013

    • Author(s)
      Shiogama K, Wongsiri T, Mizutani Y, Inada K, Tsutsumi Y
    • Journal Title

      Int J Clin Exp Pathol

      Volume: 6 (1) Pages: 24-30

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Novel approach to identifying autoantibodies in rheumatoid synovitis with a biotinylated human autoantigen library and the enzyme-labeled antigen method2013

    • Author(s)
      Mizutani Y, Matsuoka K, Takeda H, Shiogama K, Inada KI, Hayakawa K, Yamada H, Miyazaki T, Sawasaki T, Endo Y, Tsutsumi Y
    • Journal Title

      J Immunol Method

      Volume: 387 (1-2) Pages: 57-70

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] 病理標本の伸展および乾燥条件が染色性に与える影響2013

    • Author(s)
      山口大、塩竈和也、竹内沙弥花、水谷泰嘉、尾之内高慶、稲田健一、堤寛
    • Journal Title

      検査と技術

      Volume: 41 (8) Pages: 698-702

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Demonstration of hepatitis C virus RNA with in situ hybridization employing a locked nucleic acid probe in humanized liver of infected chimeric mice and in needle-biopsied human liver2013

    • Author(s)
      Shiogama K, Inada KI, Kohara M, Teramoto H, Mizutani Y, Onouchi T, and Tsutsumi Y
    • Journal Title

      International Journal of Hepatology

      Volume: online journalのため記載なし Pages: 1-7

    • DOI

      10.1155/2013/249535

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] In situ hybridization AT-tailing法による重症熱性血小板減少症候群ウイルスの証明2014

    • Author(s)
      塩竈和也、水谷泰嘉、尾之内高慶、小川博久、馬原文彦、稲田健一、堤寛
    • Organizer
      第6回日本リケッチア症臨床研究会・第20回リケッチア研究会合同研究発表会
    • Place of Presentation
      大津市
    • Year and Date
      2014-01-12
    • Related Report
      2013 Final Research Report
  • [Presentation] 環境にやさしい染色法の確立 : グロコット染色およびアザン染色の改良2013

    • Author(s)
      塩竈和也、水谷泰嘉、尾之内高慶、稲田健一、堤寛
    • Organizer
      第45回藤田学園医学会
    • Place of Presentation
      豊明市
    • Related Report
      2013 Final Research Report
  • [Presentation] すぐに実践できる環境にやさしいグロコット染色とアザン染色2013

    • Author(s)
      塩竈和也、北沢佳代、磯崎勝、水谷泰嘉、尾之内高慶、稲田健一、堤寛
    • Organizer
      第54回日本組織細胞化学会
    • Place of Presentation
      東京都
    • Related Report
      2013 Final Research Report
  • [Presentation] 長期ホルマリン固定肝組織からのHCVゲノムの証明2013

    • Author(s)
      塩竈和也、寺本英已、水谷泰嘉、尾之内高慶、稲田健一、牧野正直、堤寛
    • Organizer
      第102回日本病理学会総会
    • Place of Presentation
      札幌市
    • Related Report
      2013 Final Research Report
  • [Presentation] 環境にやさしいグロコット染色の確立 : 無水クロム酸に依存しない改良法の技術開発2013

    • Author(s)
      塩竈和也、水谷泰嘉、尾之内高慶、稲田健一、堤寛
    • Organizer
      第102回日本病理学会
    • Place of Presentation
      札幌市
    • Related Report
      2013 Final Research Report
  • [Presentation] HCV感染モデルマウスを用いた高感度in situ hybridization法によるHCVの検出2012

    • Author(s)
      稲田健一、塩竈和也、小原道法、水谷泰嘉、堤寛
    • Organizer
      第101回日本病理学会総会
    • Place of Presentation
      京王プラザ(東京都)
    • Related Report
      2013 Final Research Report
  • [Remarks] 塩竈和也、堤寛.固定および包埋による抗原性の失活・流出.免疫染色玉手箱、技術.ニチレイバイオサイエンス、東京, 2013

    • URL

      http://www.nichirei.co.jp/bio/tamatebako/index.html

    • Related Report
      2013 Final Research Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

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