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Genome analysis of a unique strain of Vibrio cholerae O1 carrying the theird replicon

Research Project

Project/Area Number 24790414
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Bacteriology (including Mycology)
Research InstitutionOsaka University

Principal Investigator

OKADA KAZUHISA  大阪大学, 微生物病研究所, 特任助教 (40420434)

Project Period (FY) 2012-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2013: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2012: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
KeywordsVibrio cholerae / コレラ菌 / タイ / コレラ
Research Abstract

In this study, we found three isolates TSY216, TSY241, and TSY421, of Vibrio cholerae O1 carrying a 0.9 Mb replicon (Ch3) in addition to the two circular chromosomes, 1 (Ch1; 3.0 Mb) and 2 (Ch2; 1.0 Mb). The genome of TSY216 carrying the Ch3 was compared with that of epidemic V. cholerae O1. The chromosomes 1 and 2 were very similar among TSY216 and other epidemic strains. However, the Ch3 did not share any conserved region with Ch1 and Ch2. Ch3 was found to encode 1,031 ORFs and 66 genes encoding tRNAs for 20 amino acids. The origin and function of Ch3 remain unidentifiable. The acquisition of a large-scale gene set of the third replicon may provide an opportunity to result in a new emerging form of V. cholerae O1.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • Research Products

    (7 results)

All 2014 2013

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (4 results) (of which Invited: 1 results) Book (2 results)

  • [Journal Article] Vibrio cholerae O1 Isolate with Novel Genetic Background, Thailand?Myanmar2013

    • Author(s)
      Okada K, Roobthaisong A, Swaddiwudhipong W, Hamada S, Chantaroj S
    • Journal Title

      Emerg Infect Dis

      Volume: 19 Pages: 1015-1017

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Presentation] タイにおけるVibrio choleraeの疫学 : 分子生物学的-遺伝学的解析2014

    • Author(s)
      岡田和久
    • Organizer
      第87回日本細菌学会総会
    • Place of Presentation
      東京、日本
    • Year and Date
      2014-03-28
    • Related Report
      2013 Final Research Report
  • [Presentation] Roobthaisong A, Chantaroj S, Hamada S, Emergence of Vibrio cholerae O1 carrying a gigantic replicon in Thailand2014

    • Author(s)
      Okada K, Natakuathung W, Na-Ubol M
    • Organizer
      Asian-African Research Forum on Emerging and Reemerging infections 2014
    • Place of Presentation
      Sendai, Japan(Oral)
    • Year and Date
      2014-01-22
    • Related Report
      2013 Final Research Report
  • [Presentation] タイにおけるVibrio choleraeの疫学:分子生物学的-遺伝学的解析2014

    • Author(s)
      岡田 和久
    • Organizer
      第87回日本細菌学会総会
    • Place of Presentation
      タワーホール船堀、東京都
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Emergence of Vibrio cholerae O1 carrying a gigantic replicon in Thailand2014

    • Author(s)
      Okada K., Natakuathung W., Na-Ubol M., Roobthaisong A., Chantaroj S., Hamada S.
    • Organizer
      Asian-African Research Forum on Emerging and Reemerging infections 2014
    • Place of Presentation
      仙台国際センター、宮城県
    • Related Report
      2013 Annual Research Report
  • [Book] タイでコレラに挑む.感染・炎症・免疫43:2013

    • Author(s)
      岡田和久、浜田茂幸
    • Related Report
      2013 Final Research Report
  • [Book] 感染・炎症・免疫2013

    • Author(s)
      岡田 和久、浜田 茂幸
    • Total Pages
      13
    • Publisher
      鳥居薬品株式会社
    • Related Report
      2013 Annual Research Report

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Published: 2013-05-31   Modified: 2019-07-29  

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