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Development of anti-cancer drug medication scheduling method based on the systematic understanding of biochemical networks

Research Project

Project/Area Number 24800050
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Bioinformatics/Life informatics
Research InstitutionKyushu Institute of Technology

Principal Investigator

MAEDA Kazuhiro  九州工業大学, 大学院情報工学研究院, 研究員 (50631230)

Project Period (FY) 2012-08-31 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Fiscal Year 2013: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2012: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywordsシステム生物学 / 概日リズム / 細胞周期 / シミュレーション / 最適化 / ダイナミックモデル / 国際情報交換
Research Abstract

By using a circadian rhythm-cell cycle model, we identified differences in cell cycles between normal and cancer cells, and proposed an efficient drug administration strategy. In order to construct simulation models, the values of kinetic parameters need to be estimated so that the models fit to experimental data. Generally, the parameter values measured in vitro are different from those in vivo. However, the in vitro measurements can be clues to in vivo values. In this study, we developed a novel parameter estimation method that uses in vitro measurements. We revealed and mathematically proved that the long negative feedback loops make oscillations robust to fluctuations in kinetic parameters.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • Research Products

    (17 results)

All 2014 2013 2012 Other

All Journal Article (7 results) (of which Peer Reviewed: 4 results) Presentation (7 results) Remarks (3 results)

  • [Journal Article] CADLIVE toolbox for MATLAB: automatic dynamic modeling of biochemical networks with comprehensive system analysis2014

    • Author(s)
      Kentaro Inoue, Kazuhiro Maeda, Takaaki Miyabe, Yu Matsuoka, Hiroyuki Kurata
    • Journal Title

      Bioprocess and Biosystems Engineering

      Volume: Epub Issue: 9 Pages: 19251927-19251927

    • DOI

      10.1007/s00449-014-1167-8

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamic Modeling of Metabolic and Gene Regulatory Systems toward Developing Virtual Microbes2014

    • Author(s)
      Hiroyuki Kurata, Kazuhiro Maeda, Yu Matsuoka
    • Journal Title

      JOURNAL OF CHEMICAL ENGINEERING OF JAPAN

      Volume: 47 Issue: 1 Pages: 1-9

    • DOI

      10.1252/jcej.13we152

    • NAID

      130003361309

    • ISSN
      0021-9592, 1881-1299
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 大腸菌アンモニア同化制御機構のダイナミックモデルの構築2013

    • Author(s)
      前田和勲, Fred C. Boogerd, Frank J. Bruggeman, Hans V. Westerhoff, 倉田博之
    • Journal Title

      IPSJ SIG Technical Report

    • NAID

      110009605329

    • Related Report
      2013 Final Research Report
  • [Journal Article] BioFNet: Biological functional network database for analysis and synthesis of biological systems2013

    • Author(s)
      Hiroyuki Kurata, Kazuhiro Maeda, Toshikazu Onaka, Takenori Takata
    • Journal Title

      Briefings in Bioinformatics

      Volume: Epub Issue: 5 Pages: 699-709

    • DOI

      10.1093/bib/bbt048

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Flux module decomposition for parameter estimation in a multiple-feedback loop model of biochemical networks2013

    • Author(s)
      Kazuhiro Maeda
    • Journal Title

      Bioprocess and Biosystems Engineering

      Volume: 36 Issue: 3 Pages: 333-344

    • DOI

      10.1007/s00449-012-0789-y

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamic modeling of ammonia assimilation system in E. coli2012

    • Author(s)
      Kazuhiro Maeda, and Hiroyuki Kurata
    • Journal Title

      IPSJ SIG Technical Report

    • Related Report
      2013 Final Research Report
  • [Journal Article] 大腸菌アンモニア同化システムのダイナミックモデルの構築2012

    • Author(s)
      前田和勲
    • Journal Title

      IPSJ SIG Technical Report

      Volume: 2012-BIO-30(5) Pages: 1-6

    • NAID

      110009432493

    • Related Report
      2012 Annual Research Report
  • [Presentation] Multiparameter sensitivity as a robustness measure for dynamic biochemical models2013

    • Author(s)
      Kazuhiro Maeda, and Hiroyuki Kurata
    • Organizer
      24th International Conference on Genome Informatics
    • Place of Presentation
      Singapore
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Developing a dynamic model of the E. coli ammonium assimilation system2013

    • Author(s)
      Kazuhiro Maeda, Fred C. Boogerd, Frank J. Bruggeman, Hans V. Westerhoff, and Hiroyuki Kurata
    • Organizer
      The 36th Annual Meeting of the Molecular Biology Society of Japan
    • Place of Presentation
      Kobe, Japan
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] 大腸菌アンモニア同化システムの定量的ダイナミックモデルの構築2013

    • Author(s)
      Kazuhiro Maeda, Fred C. Boogerd, Frank J. Bruggeman, Hans V. Westerhoff, and Hiroyuki Kurata
    • Organizer
      定量生物学の会 第六回年会
    • Place of Presentation
      大阪
    • Related Report
      2013 Annual Research Report
  • [Presentation] A quantitative model for kinetic regulation of the E. coli ammonium assimilation system2013

    • Author(s)
      Kazuhiro Maeda, Fred C. Boogerd, Frank J. Bruggeman, Hans V. Westerhoff, and Hiroyuki Kurata
    • Organizer
      The 2013 Annual Conference of Japanese Society for Bioinformatics
    • Place of Presentation
      Tokyo
    • Related Report
      2013 Annual Research Report
  • [Presentation] Dynamic modeling of E. coli ammonia assimilation system2012

    • Author(s)
      Kazuhiro Maeda, Fred C. Boogerd, Hans V. Westerhoff, Frank J. Bruggeman, and Hiroyuki Kurata
    • Organizer
      FOSBE 2012
    • Place of Presentation
      Tsuruoka, Japan
    • Related Report
      2013 Final Research Report
  • [Presentation] Dynamic modeling of E. coli ammonia assimilation system2012

    • Author(s)
      Kazuhiro Maeda
    • Organizer
      FOSBE 2012
    • Place of Presentation
      Tsuruoka, Yamagata, Japan
    • Related Report
      2012 Annual Research Report
  • [Presentation] 大腸菌アンモニア同化制御機構のダイナミックモデルの構築

    • Author(s)
      前田和勲, Fred C. Boogerd, Frank J. Bruggeman, Hans V. Westerhoff, 倉田博之
    • Organizer
      第35回 情報処理学会 バイオ情報学研究会
    • Place of Presentation
      札幌
    • Related Report
      2013 Annual Research Report
  • [Remarks] 研究成果のリスト

    • URL

      http://kurata21.bio.kyutech.ac.jp/maeda/

    • Related Report
      2013 Final Research Report
  • [Remarks] 研究代表者の業績まとめ

    • URL

      http://kurata21.bio.kyutech.ac.jp/maeda/

    • Related Report
      2013 Annual Research Report
  • [Remarks] 研究成果のリスト

    • URL

      http://kurata21.bio.kyutech.ac.jp/maeda/

    • Related Report
      2012 Annual Research Report

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Published: 2012-11-27   Modified: 2019-07-29  

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