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Unique mechanisms of gastric proton pump revealed by

Research Project

Project/Area Number 24870014
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Functional biochemistry
Research InstitutionNagoya University

Principal Investigator

ABE Kazuhiro  名古屋大学, 細胞生理学研究センター, 助教 (60596188)

Project Period (FY) 2012-08-31 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords生体エネルギー変換 / 胃プロトンポンプ / P型ATPase / 膜タンパク質 / 極低温電子顕微鏡 / 電子線結晶学
Research Abstract

In response to food intake, pH of our stomach reaches around 1. This highly acidic environment is generated by Gastric proton pump, H+,K+-ATPase, therefore a prominent drug target for the acid-related diseases. Besides its significant interest as a drug target, gastric H+,K+-ATPase faces a remarkable task of pumping protons against a million-fold gradient ranging from pH 7 in the cell to 1 in the stomach. Maintaining a potent concentration gradient of six orders of magnitude is hardly met by any other membrane pump in nature. How does the proton pump generate a million-fold H+ gradient?
A key requirement is the transport stoichiometry. By determining a single Rb+-bound structure of H+,K+-ATPase by electron crystallography of 2D crystals prepared by improved carbon sandwich method, we showed the unique structural evidence of 1H+/1Rb+/1ATP transport mode, which is prerequisite for the generation of the potent proton gradient across the membrane.

Report

(3 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • Research Products

    (27 results)

All 2013 2012 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (17 results) (of which Invited: 9 results) Remarks (4 results)

  • [Journal Article] The four-transmembrane protein IP39 of Euglena forms strands by a trimeric unit repeat2013

    • Author(s)
      Suzuki, H., Ito, Y., Yamazaki, Y., Mineta, K.,Uji, M., Abe, K., Tani, K., Fujiyoshi, Y. &Tsukita, S.
    • Journal Title

      Nat. Commun.

      Volume: 4(10.1038/ncomms2731) Pages: 1766-1766

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Carbon sandwich preparation preserves quality of two-dimensional crystals for cryo-electron microscopy2013

    • Author(s)
      Yang, F., Abe, K. Tani, K. & Fujiyoshi, Y.
    • Journal Title

      Microscopy (Oxf)

      Volume: 62(10.1093/jmicro/dft038) Pages: 597-606

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Carbon sandwich preparation preserves quality of two-dimensional crystals for cryo-electron microscopy.2013

    • Author(s)
      F. Yang, K. Abe, K. Tani and Y. Fujiyoshi
    • Journal Title

      Microscopy

      Volume: 62 Issue: 6 Pages: 597-606

    • DOI

      10.1093/jmicro/dft038

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The four-transmembrane protein IP39 of Euglena forms strands by a trimeric unit repeat2013

    • Author(s)
      Suzuki H. Itoh Y., et al.
    • Journal Title

      Nature communication

      Volume: 4 Issue: 1 Pages: 1-766

    • DOI

      10.1038/ncomms2731

    • URL

      https://pure.teikyo.jp/en/publications/2fc8fe41-7fae-4599-9aba-45b2667a75ad

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cryo-EM structure of gastric H+,K+-ATPase with a single occupied cation binding site2012

    • Author(s)
      Abe, K., Tani, K., Friedrich, T. & Fujiyoshi,Y.
    • Journal Title

      Proc. Natl. Acad. Sci. U.S.A.

      Volume: 109(10.1073/pnas) Pages: 18401-18406

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cryo-EM structure of gastric H+,K+-ATPase with a single occupied cation-binding site.2012

    • Author(s)
      Abe, K., Tani, K., Friedrich, T. & Fujiyoshi, Y.
    • Journal Title

      Proc Natl Acad Sci U S A

      Volume: 109 Pages: 18401-18406

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] Unique properties and conserved conformational changes found in gastric H+,K+-ATPase2013

    • Author(s)
      Abe, K
    • Organizer
      Nagoya Symposium
    • Place of Presentation
      Nagoya
    • Related Report
      2013 Final Research Report
  • [Presentation] Cryo-EM structure of gastric protonpump2013

    • Author(s)
      Abe, K
    • Organizer
      FAOBMB mini symposium
    • Place of Presentation
      Morioka, Iwate (Invited)
    • Related Report
      2013 Final Research Report
  • [Presentation] 胃プロトンポンプの生化学と電子線結晶構造解析2013

    • Author(s)
      阿部一啓
    • Organizer
      日本生化学会平成25 年度奨励賞受賞講演
    • Place of Presentation
      横浜
    • Related Report
      2013 Final Research Report
  • [Presentation] Biochemical and electron crystallographic studies of gastric proton pump2013

    • Author(s)
      Abe, K.
    • Organizer
      The 86th Annual Meeting of the Japanese Biochemical Society
    • Place of Presentation
      Yokohama
    • Related Report
      2013 Final Research Report
  • [Presentation] 電子顕微鏡のイメージから膜タンパク質の立体構造を再構成する2013

    • Author(s)
      阿部一啓
    • Organizer
      第23回分析化学講習会 愛知地区講演会
    • Place of Presentation
      名古屋大学
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 胃プロトンポンプの極低温電子顕微鏡による構造解析2013

    • Author(s)
      阿部一啓
    • Organizer
      大阪大学タンパク質研究所セミナー 第4回神経科学と構造生物学の融合研究会
    • Place of Presentation
      岡崎
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Cryo-EM structures of gastric proton pump.2013

    • Author(s)
      Abe K.
    • Organizer
      FAOBMB Mini-symposium
    • Place of Presentation
      Iwate Medical University
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 胃プロトンポンプの生化学と電子線結晶構造解析2013

    • Author(s)
      阿部一啓
    • Organizer
      日本生化学会平成25年度奨励賞受賞講演
    • Place of Presentation
      横浜
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Biochemical and Electron crystallographic Studies of Gastric Proton Pump2013

    • Author(s)
      Abe K.
    • Organizer
      The 86th Annual Meeting of the Japanese Biochemical Society,
    • Place of Presentation
      Yokohama
    • Related Report
      2013 Annual Research Report
  • [Presentation] 電子顕微鏡のイメージから膜タンパク質の立体構造を再構成する2013

    • Author(s)
      阿部一啓
    • Organizer
      第23回分析化学講習会 愛知地区講演会
    • Place of Presentation
      名古屋大学
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 胃プロトンポンプの極低温電子顕微鏡による構造解析2013

    • Author(s)
      阿部一啓
    • Organizer
      大阪大学タンパク質研究所セミナー 第4回神経科学と構造生物学の融合研究会
    • Place of Presentation
      岡崎
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Unique properties and conserved conformational changes found in gastric H+,K+-ATPase2013

    • Author(s)
      Kazuhiro Abe
    • Organizer
      Nagoya Symposium
    • Place of Presentation
      Nagoya University
    • Related Report
      2012 Annual Research Report
  • [Presentation] Cryo-EM structures of gastric proton pump2013

    • Author(s)
      Kazuhiro Abe
    • Organizer
      FAOBMB mini symposium
    • Place of Presentation
      Morioka, Iwate
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 対向輸送カチオンを一つだけ結合した胃H+,K+-ATPase の8Å 分解能での立体構造2012

    • Author(s)
      阿部一啓
    • Organizer
      日本生化学会大会
    • Place of Presentation
      福岡
    • Related Report
      2013 Final Research Report
  • [Presentation] 電子線結晶学による胃プロトンポンプの立体構造解析2012

    • Author(s)
      阿部一啓
    • Organizer
      日本生体エネルギー研究会
    • Place of Presentation
      岡山大学
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 対向輸送カチオンを一つだけ結合した胃H+,K+-ATPaseの8Å分解能での立体構造

    • Author(s)
      阿部 一啓
    • Organizer
      日本生化学会大会
    • Place of Presentation
      福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] 電子線結晶学による胃プロトンポンプの立体構造解析

    • Author(s)
      阿部 一啓
    • Organizer
      日本生体エネルギー研究会
    • Place of Presentation
      岡山大学
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Remarks]

    • URL

      http://www.cespi.nagoya-u.ac.jp/

    • Related Report
      2013 Final Research Report
  • [Remarks] 名古屋大学 細胞生理学研究センター

    • URL

      http://www.cespi.nagoya-u.ac.jp/

    • Related Report
      2013 Annual Research Report
  • [Remarks] 名古屋大学 創薬科学研究科

    • URL

      http://www.ps.nagoya-u.ac.jp/

    • Related Report
      2013 Annual Research Report
  • [Remarks] 細胞生理学研究センター

    • URL

      http://www.cespi.nagoya-u.ac.jp/

    • Related Report
      2012 Annual Research Report

URL: 

Published: 2012-11-27   Modified: 2019-07-29  

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