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Regulation of gene expression through RNAi dependent heterochromatin formation and nuclear membrane

Research Project

Project/Area Number 25250022
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Genome biology
Research InstitutionHokkaido University

Principal Investigator

Murakami Yota  北海道大学, 理学(系)研究科(研究院), 教授 (20260622)

Co-Investigator(Kenkyū-buntansha) KATO Hiroaki  島根大学, 医学部, 助教 (40548418)
Co-Investigator(Renkei-kenkyūsha) TAKAHATA Shinya  北海道大学, 大学院理学研究院, 助教 (50381588)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥47,060,000 (Direct Cost: ¥36,200,000、Indirect Cost: ¥10,860,000)
Fiscal Year 2015: ¥10,270,000 (Direct Cost: ¥7,900,000、Indirect Cost: ¥2,370,000)
Fiscal Year 2014: ¥13,260,000 (Direct Cost: ¥10,200,000、Indirect Cost: ¥3,060,000)
Fiscal Year 2013: ¥23,530,000 (Direct Cost: ¥18,100,000、Indirect Cost: ¥5,430,000)
Keywordsクロマチン / エピジェネティクス / 核膜 / 環境応答 / 分裂酵母 / クロマチン制御 / エピジェネティック制御 / 核膜タンパク質 / ヘテロクロマチン / 小分子RNA制御
Outline of Final Research Achievements

In eukaryotic cells, heterochromatin, which is important for the gene and chromosome regulation, localizes at nuclear periphery, but its mechanism and physiological functions are not understood. We previously found that RNAi factors,which negatively regulate gene expression, form factories for heterochromatin formation at nuclear periphery in fission yeast.
In this study, we found that RNAi factors contribute to the nuclear periphery localization of heterochromatin. In addition, analysis of nuclear membrane proteins revealed that Lem2 plays a role in the formation and the nuclear periphery localization independently on RNAi factors. Especially, Lem2 regulates heterochromatin in response to the growth condition. These findings are important for the understanding of epigenetic response to environmental changes.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (8 results)

All 2016 2015 2014 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (4 results) (of which Int'l Joint Research: 3 results,  Invited: 1 results) Remarks (2 results)

  • [Journal Article] Histone H3K36 trimethylation is essential for multiple silencing mechanism in fission yeast.2016

    • Author(s)
      Shota Suzuki, Hiroaki Kato, Yutaka Suzuki, Yuji Chikashige, Yasushi Hiraoka, Hiroshi Kimura, Koji Nagao, Chikashi Obuse, Shinya Takahata and Yota Murakami
    • Journal Title

      Nucleic Acids Research

      Volume: 44 (9) Issue: 9 Pages: 4147-4162

    • DOI

      10.1093/nar/gkw008

    • NAID

      120005819302

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A novel method for purification of the endogenously expressed fission yeast Set2 complex.2014

    • Author(s)
      Suzuki S
    • Journal Title

      Protein Expression and Purification.

      Volume: 97 Pages: 44-49

    • DOI

      10.1016/j.pep.2014.02.005

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] A jmjC-domain containing putative histone demethylase, Epe1 protects epigenom against aberrant heterochromatin formation.2015

    • Author(s)
      村上洋太
    • Organizer
      The 40th Naito Conference on Epigenetics - From Histone Code to Therapeutic Strategy
    • Place of Presentation
      シャトレーゼ・ガトー・キングダム(北海道札幌市)
    • Year and Date
      2015-09-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] H3K36 tri-methylation but not H3K36 di-methylation is required for gene silencing in Schizosaccharomyces pombe2015

    • Author(s)
      鈴木詔大
    • Organizer
      The 18th international fission yeast meeting
    • Place of Presentation
      生田神社会館(兵庫県神戸市)
    • Year and Date
      2015-06-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Roles of putative jmjC-domain demethylase Epe1 in pericentromeric cohesion and epigenome maintenance2015

    • Author(s)
      村上洋太
    • Organizer
      The 18th international fission yeast meeting
    • Place of Presentation
      生田神社会館(兵庫県神戸市)
    • Year and Date
      2015-06-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Ser7 phosphorylation of RNAPII-CTD ensures on-chromatin retention of nascent ncRNAs triggering RNAi-dependent heterochromatin formation.2014

    • Author(s)
      Kajitani, T., Hermmand D., Murakami, Y.
    • Organizer
      Cell Symposia Transcription Regulation in Development
    • Place of Presentation
      Chicago
    • Year and Date
      2014-07-13 – 2014-07-16
    • Related Report
      2013 Annual Research Report
  • [Remarks] ホーム|生物有機化学研究室

    • URL

      http://wwwchem.sci.hokudai.ac.jp/~bo/

    • Related Report
      2015 Annual Research Report
  • [Remarks] 北海道大学大学院理学研究院化学部門生物有機化学研究室ホームページ

    • URL

      http://wwwchem.sci.hokudai.ac.jp/~bo/index.html

    • Related Report
      2013 Annual Research Report

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Published: 2013-05-15   Modified: 2017-05-10  

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