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Sorting mechanism for RNA plymerase II transcripts

Research Project

Project/Area Number 25251004
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionKyoto University

Principal Investigator

OHNO Mutsuhito  京都大学, ウイルス・再生医科学研究所, 教授 (80201979)

Co-Investigator(Renkei-kenkyūsha) TANIGUCHI Ichiro  京都大学, ウイルス・再生医科学研究所, 助教 (00467432)
Project Period (FY) 2013-10-21 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥44,720,000 (Direct Cost: ¥34,400,000、Indirect Cost: ¥10,320,000)
Fiscal Year 2017: ¥8,710,000 (Direct Cost: ¥6,700,000、Indirect Cost: ¥2,010,000)
Fiscal Year 2016: ¥8,710,000 (Direct Cost: ¥6,700,000、Indirect Cost: ¥2,010,000)
Fiscal Year 2015: ¥8,710,000 (Direct Cost: ¥6,700,000、Indirect Cost: ¥2,010,000)
Fiscal Year 2014: ¥8,710,000 (Direct Cost: ¥6,700,000、Indirect Cost: ¥2,010,000)
Fiscal Year 2013: ¥9,880,000 (Direct Cost: ¥7,600,000、Indirect Cost: ¥2,280,000)
KeywordsRNAポリメラーゼⅡ / RNA核外輸送 / mRNA / U snRNA / hnRNP / UsnRNA / hnRNP / RNAポリメラーゼⅡ / U snRNA / RNAポリメラーゼII
Outline of Final Research Achievements

It is known that mRNAs, aberrantly bound by U snRNA export factors due to low expression of hnRNP C, are not exported to the cytoplasm. We are interested in studying such a novel mechanism that monitors the integrity of nuclear mRNPs. Here we show that knock-down of PHAX, which has an antagonizing activity against hnRNP C, induced genome instability. We further show that PHAX somehow controls the expression of histone H2AX, which is a key player for DNA lesion responses.

Report

(6 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (29 results)

All 2018 2017 2016 2015 2014 2013

All Journal Article (11 results) (of which Peer Reviewed: 8 results,  Open Access: 7 results,  Acknowledgement Compliant: 2 results) Presentation (17 results) (of which Int'l Joint Research: 7 results,  Invited: 7 results) Book (1 results)

  • [Journal Article] Ribosomal protein uS7/Rps5 serine-223 in protein kinase-mediated phosphorylation and ribosomal small subunit maturation2018

    • Author(s)
      Tomioka Makoto、Shimobayashi Mitsugu、Kitabatake Makoto、Ohno Mutsuhito、Kozutsumi Yasunori、Oka Shogo、Takematsu Hiromu
    • Journal Title

      SCIENTIFIC REPORT

      Volume: 8 Issue: 1 Pages: 1244-1244

    • DOI

      10.1038/s41598-018-19652-z

    • NAID

      120006510286

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transport Granules Bound with Nuclear Cap Binding Protein and Exon Junction Complex Are Associated with Microtubules and Spatially Separated from eIF4E Granules and P Bodies in Human Neuronal Processes2017

    • Author(s)
      Wang Dan O.、Ninomiya Kensuke、Mori Chihiro、Koyama Ayako、Haan Martine、Kitabatake Makoto、Hagiwara Masatoshi、Chida Kazuhiro、Takahashi Shin-Ichiro、Ohno Mutsuhito、Kataoka Naoyuki
    • Journal Title

      Front Mol. Biosci.

      Volume: 4 Pages: 4-93

    • DOI

      10.3389/fmolb.2017.00093

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dendritic transport element of human arc mRNA confers RNA degradation activity in a translation-dependent manner.2016

    • Author(s)
      Ninomiya K, Ohno M, Kataoka N.
    • Journal Title

      Genes Cells

      Volume: 21 Issue: 11 Pages: 1263-1269

    • DOI

      10.1111/gtc.12439

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Exportin-5 mediates nuclear export of SRP RNA in vertebrates2015

    • Author(s)
      Takeiwa T, Taniguchi I, Ohno M
    • Journal Title

      Genes to Cells

      Volume: 20 Issue: 4 Pages: 281-291

    • DOI

      10.1111/gtc.12218

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 適正なRNA核外輸送複合体形成の保証機構2015

    • Author(s)
      谷口一郎、大野睦人
    • Journal Title

      生化学

      Volume: 第87巻第1号 Pages: 68-74

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Identification of the specific interactors of the human lariat RNA debranching enzyme 1 protein.2015

    • Author(s)
      Masaki S, Yoshimoto R, Kaida D, Hata A, Satoh T, Ohno M, Kataoka N
    • Journal Title

      Int. J. Mol. Sci

      Volume: 16 Issue: 2 Pages: 3705-21

    • DOI

      10.3390/ijms16023705

    • NAID

      120005555507

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crt10 directs the cullin-E3 ligase Rtt101 to nonfunctional 25S rRNA decay2015

    • Author(s)
      Sakata T, Fujii K, Ohno M, Kitabatake M
    • Journal Title

      Biochem. Biophys. Res. Commu

      Volume: 457 Issue: 1 Pages: 90-4

    • DOI

      10.1016/j.bbrc.2014.12.072

    • NAID

      120005567895

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] HIV-1 Rev protein specifies the viral RNA export pathway by suppressing TAP/NXF1 recruitment2014

    • Author(s)
      Taniguchi I, Mabuchi N, Ohno M
    • Journal Title

      Nucleic Acids Res

      Volume: 42 Issue: 10 Pages: 6645-58

    • DOI

      10.1093/nar/gku304

    • NAID

      120005458278

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Analysis of RNA localization and export in Xenopus oocytes and mammalian cells2014

    • Author(s)
      Taniguchi, I., McCloskey, A. and Ohno, M
    • Journal Title

      Methods Cell Biol

      Volume: 122 Pages: 395-413

    • Related Report
      2014 Annual Research Report
  • [Journal Article] p54nrb/ NonO and PSF promote U snRNA nuclear export by accelerating its export complex assembly2014

    • Author(s)
      Izumi, H., McCloskey, A., Shinmyozu, K., Ohno, M
    • Journal Title

      Nucleic Acids Res

      Volume: 42 Issue: 6 Pages: 3998-4007

    • DOI

      10.1093/nar/gkt1365

    • NAID

      120005439166

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] RNAの長さに隠された秘密2013

    • Author(s)
      マクロースキー亜紗子、谷口一郎、大野睦人
    • Journal Title

      実験医学

      Volume: 31 No.7 Pages: 135-143

    • Related Report
      2013 Annual Research Report
  • [Presentation] Systematic analysis of hnRNP C domains in sorting RNA polymerase II transcripts.2017

    • Author(s)
      Dantsuji, S., Taniguchi, I. and Ohno,
    • Organizer
      15th International Student Seminar
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      2017-02-23
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 環状RNA(circRNA)の核外輸送機構の解明2017

    • Author(s)
      芳本 玲、谷口 一郎、大野 睦人、前田 明
    • Organizer
      第40回日本分子生物学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] mRNA様long noncoding RNAの核局在化機構の解析2017

    • Author(s)
      竹岩俊彦、大野睦人
    • Organizer
      RNAフロンティアミーティング2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] Identification of RNA helicase used in U snRNA export2017

    • Author(s)
      Taniguchi I, Ohno M.
    • Organizer
      第19回日本RNA学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Systematic analysis of hnRNP C domains in sorting RNA polymerase II transcripts2017

    • Author(s)
      Dantsuji S, Taniguchi I, Ohno M.
    • Organizer
      第19回日本RNA学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Nuclear export versus nuclear retention of RNA.2016

    • Author(s)
      Ohno, M.
    • Organizer
      IVR retreat
    • Place of Presentation
      Otsu, Shiga, Japan
    • Year and Date
      2016-12-21
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Exportin-5 mediates nuclear export of SRP RNA in vertebrates.2016

    • Author(s)
      Takeiwa, T, and Ohno, M.
    • Organizer
      18th RNA meeting
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      2016-06-28
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Quality Control of Eukaryotic Ribosomes2016

    • Author(s)
      Kitabatake M., Sakata T., Ohno M.
    • Organizer
      The 18th Tokyo RNA Club - Ribosome and Translational Apparatus
    • Place of Presentation
      Tokyo University, Tokyo, Japan
    • Year and Date
      2016-01-14
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Selective ubiquitination and degradation of defective 60S particles.2016

    • Author(s)
      Kitabatake, M., Sakata, T. and Ohno, M.
    • Organizer
      RNA2016 satellite-symposium
    • Place of Presentation
      Kyoto, Japan
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] HIV-1 Rev protein specifies the viral RNA export pathway by suppressing TAP/NXF1 recruitment2015

    • Author(s)
      Taniguchi, I. and Ohno, M
    • Organizer
      East Asia Joint Symposium 2015
    • Place of Presentation
      Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan
    • Year and Date
      2015-11-11
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A cellular mechanism that sorts RNA transcripts according to their lengths2015

    • Author(s)
      Ohno, M
    • Organizer
      The 10th International Symposium for the Inter-institutional Network (ISIIN)
    • Place of Presentation
      Hokkaido University, Sapporo, Hokkaido, Japan
    • Year and Date
      2015-07-23
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 真核生物60Sリボソームの品質管理とストレス応答経路との関わり2015

    • Author(s)
      北畠真、坂田知子、藤井耕太郎、大野睦人
    • Organizer
      第3回 RIBOSOME MEETING
    • Place of Presentation
      ANAホリディ・インリゾート宮崎(宮崎県宮崎市)
    • Year and Date
      2015-03-17 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] HIV-1のRevタンパク質はTAP/NXF1のリクルートを抑制することによりウイルスRNAの核外輸送経路を規定する2014

    • Author(s)
      谷口一郎、馬渕直人、大野睦人
    • Organizer
      第16回日本RNA学会
    • Place of Presentation
      ウインクあいち(愛知県名古屋市)
    • Year and Date
      2014-07-23 – 2014-07-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] Exportin-5がSRP RNAの核外輸送に果たす役割2014

    • Author(s)
      竹岩俊彦, 大野睦人
    • Organizer
      第16回日本RNA学会
    • Place of Presentation
      ウインクあいち(愛知県名古屋市)
    • Year and Date
      2014-07-23 – 2014-07-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] ショウジョウバエにおけるRNA polymerase II転写産物の仕分け機構の解析2014

    • Author(s)
      鈴木完、谷口一郎、大野睦人
    • Organizer
      第16回日本RNA学会
    • Place of Presentation
      ウインクあいち(愛知県名古屋市)
    • Year and Date
      2014-07-23 – 2014-07-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] Inhibition of mRNA export through dispersion of nucleoporins.2013

    • Author(s)
      Ohno M, McCloskey A
    • Organizer
      第36回日本分子生物学会
    • Place of Presentation
      神戸市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] RNAi-mediated depletion of hnRNP C revealed a novel surveillance mechanism of proper mRNP formation.2013

    • Author(s)
      Ohno M, McCloskey A
    • Organizer
      RNA Sciences in Cell and Developmental Biology
    • Place of Presentation
      神戸市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Book] ノンコーディングRNA(廣瀬哲郎・泊幸秀 編)「ncRNAの生合成経路(21章)」2016

    • Author(s)
      竹岩俊彦、谷口一郎、大野睦人
    • Total Pages
      10
    • Publisher
      化学同人
    • Related Report
      2016 Annual Research Report

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Published: 2013-10-24   Modified: 2019-07-29  

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