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Structural plasticity and functional integration of multi-functional and multi-domain proteins: From structures to systems

Research Project

Project/Area Number 25251019
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionKyoto University

Principal Investigator

Takada Shoji  京都大学, 理学研究科, 教授 (60304086)

Co-Investigator(Kenkyū-buntansha) 検崎 博生  国立研究開発法人理化学研究所, その他部局等, 研究員 (20402464)
Project Period (FY) 2013-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥46,930,000 (Direct Cost: ¥36,100,000、Indirect Cost: ¥10,830,000)
Fiscal Year 2016: ¥9,100,000 (Direct Cost: ¥7,000,000、Indirect Cost: ¥2,100,000)
Fiscal Year 2015: ¥9,100,000 (Direct Cost: ¥7,000,000、Indirect Cost: ¥2,100,000)
Fiscal Year 2014: ¥9,100,000 (Direct Cost: ¥7,000,000、Indirect Cost: ¥2,100,000)
Fiscal Year 2013: ¥19,630,000 (Direct Cost: ¥15,100,000、Indirect Cost: ¥4,530,000)
Keywordsタンパク質 / p53 / DnaA / Ste5 / シミュレーション / p53
Outline of Final Research Achievements

For DNA replication ignition complex made of DnaA and others, we constructed a coarse-grained model first, which is reverse-mapped to obtain atomic structure of the complex for the first time. The constructed model is made of three sub-complexes. By biochemical experiments, it was shown to be consistent with the experimental data. This study revealed near-atomic structural model of the DNA replication initiation complex.

Report

(5 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (65 results)

All 2017 2016 2015 2014 2013 Other

All Journal Article (17 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 17 results,  Acknowledgement Compliant: 6 results,  Open Access: 4 results) Presentation (46 results) (of which Int'l Joint Research: 8 results,  Invited: 17 results) Book (2 results)

  • [Journal Article] Near-atomic structural model for bacterial DNA replication initiation complex and its functional insights2016

    • Author(s)
      Masahiro Shimizu, Yasunori Noguchi, Yukari Sakiyama, Hironori Kawakami, Tsutomu Katayama, and Shoji Takada
    • Journal Title

      Proceedings of the National Academy of Sciences USA

      Volume: 113 Issue: 50

    • DOI

      10.1073/pnas.1609649113

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Histone acetylation dependent energy landscapes in tri-nucleosome revealed by residue-resolved molecular simulations2016

    • Author(s)
      Le Chang and Shoji Takada
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1

    • DOI

      10.1038/srep34441

    • NAID

      120005850270

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics2016

    • Author(s)
      Cheng Tan, Tsuyoshi Terakawa, and Shoji Takada
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 138 Issue: 27 Pages: 8512-8522

    • DOI

      10.1021/jacs.6b03729

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] On the ATP binding site of the ε subunit from bacterial F-type ATP synthases2016

    • Author(s)
      Alexander Krah, and Shoji Takada
    • Journal Title

      Biochimica et Biophysica Acta - Bioenergetics

      Volume: 1857 Issue: 4 Pages: 332-340

    • DOI

      10.1016/j.bbabio.2016.01.007

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Modeling Structural Dynamics of Biomolecular Complexes by Coarse-Grained Molecular Simulations2015

    • Author(s)
      Shoji Takada, Ryo Kanada, Cheng Tan, Tsuyoshi Terakawa, Wenfei Li, and Hiroo Kenzaki
    • Journal Title

      Accounts of Chemical Research

      Volume: 48 Issue: 12 Pages: 3026-3035

    • DOI

      10.1021/acs.accounts.5b00338

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] p53 dynamics upon response element recognition explored by molecular simulations2015

    • Author(s)
      Tsuyoshi Terakawa and Shoji Takada
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 17107-17107

    • DOI

      10.1038/srep17107

    • NAID

      120005758220

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Partial Unwrapping and Histone Tail Dynamics in Nucleosome Revealed by Coarse-Grained Molecular Simulations2015

    • Author(s)
      Hiroo Kenzaki and Shoji Takada
    • Journal Title

      PLoS Computational Biology

      Volume: 11 Issue: 8 Pages: e1004443-e1004443

    • DOI

      10.1371/journal.pcbi.1004443

    • NAID

      120005947019

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] How Co-translational Folding of Multi-domain Protein Is Affected by Elongation Schedule: Molecular Simulations2015

    • Author(s)
      Tomohiro Tanaka, Naoto Hori, and Shoji Takada
    • Journal Title

      PLoS Computational Biology

      Volume: 11 Issue: 7 Pages: e1004356-e1004356

    • DOI

      10.1371/journal.pcbi.1004356

    • NAID

      120005946993

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] On the Mg2+ binding site of the ε subunit from bacterial F-type ATP synthases2015

    • Author(s)
      Alexander Krah and Shoji Takada
    • Journal Title

      Biochimica et Biophysica Acta - Bioenergetics

      Volume: 1847 Issue: 10 Pages: 1101-1112

    • DOI

      10.1016/j.bbabio.2015.05.018

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Couplings between Hierarchical Conformational Dynamics from Multi-Time Correlation Functions and Two-Dimensional Lifetime Spectra: Application to Adenylate Kinase2015

    • Author(s)
      J. Ono, S. Takada, and S. Saito
    • Journal Title

      Journal of Chemical Physics

      Volume: 142 Issue: 21 Pages: 212404-212404

    • DOI

      10.1063/1.4914328

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Energy landscape views for interplays among folding, binding, and allostery of calmodulin domain2015

    • Author(s)
      Wenfei Li, Wei Wang, and Shoji Takada,
    • Journal Title

      Proceedings of the National Academy of Sciences USA

      Volume: 111(29) Issue: 29 Pages: 10550-10555

    • DOI

      10.1073/pnas.1402768111

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dimer domain swapping versus monomer folding in apo-myoglobin studied by molecular simulations2015

    • Author(s)
      Koji Ono, Mashiho Ito, Shun Hirotab and Shoji Takada
    • Journal Title

      Phys. Chem. Chem. Phys.

      Volume: 17 Issue: 7 Pages: 5006-5013

    • DOI

      10.1039/c4cp05203j

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RESPAC : Method to Determine Partial Charges in Coarse-greined Prote in Model and Its Application to DNA-Binding Proteins' Journal of Chemical Theory and Computation2014

    • Author(s)
      Tsuyoshi Terakawa and Shoji Takadae
    • Journal Title

      Journal of Chemical Theory and Computation

      Volume: 10 Issue: 2 Pages: 711-721

    • DOI

      10.1021/ct4007162

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Drug Uptake Pathways of Multidrug Transporter AcrB Studied by Molecular Simulations and Site-Directed Mutagenesis Experiments2013

    • Author(s)
      Xin-Qiu Yao, Nobuhiro Kimura, Satoshi Murakami, and Shoji Takada
    • Journal Title

      Journal of the American Chemical Society

      Volume: 135 (20) Issue: 20 Pages: 7474-7485

    • DOI

      10.1021/ja310548h

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Protein-Specific Force Field Derived from the Fragment Molecular Orbital Method can Improve Protein-Ligand Binding Interactions2013

    • Author(s)
      L. Chang, T. Ishikawa, K. Kuwata, and S. Takada
    • Journal Title

      J. Comp. Chem

      Volume: vol. 34 Issue: 14 Pages: 1251-1257

    • DOI

      10.1002/jcc.23250

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Folding coupled with assembly in split green fluorescent proteins studied by structure-based molecular simulations.2013

    • Author(s)
      M. Ito, T. Ozawa and S. Takada
    • Journal Title

      J. Phys. Chem.

      Volume: 117 Issue: 42 Pages: 13212-13218

    • DOI

      10.1021/jp4032817

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ATP hydrolysis mechanism in kinesin studied by combined quantum-mechanical molecular-mechanical metadynamics2013

    • Author(s)
      M. J. McGrath、I-F. W. Kuo, S.Hayashi, S. Takada
    • Journal Title

      J. Amer. Chem. Soc.

      Volume: (in press) Issue: 24 Pages: 8908-891

    • DOI

      10.1021/ja401540g

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] Coarse-grained molecular simulations for giant protein-DNA complexes2017

    • Author(s)
      Shoji Takada
    • Organizer
      American Physical Society Metting, New Orleans March 2017
    • Place of Presentation
      New Orleans(USA)
    • Year and Date
      2017-03-13
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] NEAR-ATOMIC STRUCTURAL MODEL FOR BACTERIAL DNA REPLICATION INITIAT ION COMPLEX AND ITS FUNCTIONAL INSIGHTS2017

    • Author(s)
      Masahiro Shimizu, Yasunori Noguchi, Yukari Sakiyama, Hironori Kawaka mi, Tsutomu Katayama, Shoji Takada
    • Organizer
      Biophysical Society 61st Annual Meeting
    • Place of Presentation
      New Orleans(USA)
    • Year and Date
      2017-02-11
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Protein folding and misfolding studied by molecular simulations2017

    • Author(s)
      Shoji Takada
    • Organizer
      International IPR Seminar “New Frontiers in Protein Misfolding and Aggregation”
    • Place of Presentation
      Institute for Protein Research(Osaka)
    • Year and Date
      2017-01-26
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 細菌DNA複製開始複合体の近原子構造モデルと機能解析2016

    • Author(s)
      清水将裕、野口泰徳、﨑山友香里、川上広宣、片山勉、高田彰二
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 微小管上での細胞質ダイニンの運動メカニズムに関する分子シミュレーション研究2016

    • Author(s)
      久保進太郎, 高田彰二
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] リンカーDNA により繋がっているダイヌクレオソーム構造のサンプリング2016

    • Author(s)
      検崎博生, 高田彰二
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(つくば市)
    • Year and Date
      2016-11-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] 細胞質ダイニンの構造変化を伴う運動メカニズムに関する分子シミュレーション研究2016

    • Author(s)
      久保進太郎, 高田彰二
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(つくば市)
    • Year and Date
      2016-11-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] Structural modeling of the subnucleosome using coarse-grained molecular dynamics simulations2016

    • Author(s)
      Masahiro Shimizu, Shoji Takada
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(つくば市)
    • Year and Date
      2016-11-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] Multiscale Modeling of Flexible Biomolecular Complex2016

    • Author(s)
      Shoji Takada
    • Organizer
      4th International Conference on Molecular Simulation (ICMS 2016)
    • Place of Presentation
      Shanghai, China
    • Year and Date
      2016-10-23
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] タンパク質DNA複合体のマルチスケールモデリング:粗視化モデルから原 子モデル構造の構築2016

    • Author(s)
      清水将裕, 高田彰二
    • Organizer
      第10回分子科学討論会
    • Place of Presentation
      神戸ファッションマート(神戸市)
    • Year and Date
      2016-09-13
    • Related Report
      2016 Annual Research Report
  • [Presentation] 細胞質ダイニンの歩行運動メカニズムに関する分子シミュレーション研究2016

    • Author(s)
      久保進太郎, 高田彰二
    • Organizer
      第10回分子科学討論会
    • Place of Presentation
      神戸ファッションマート(神戸市)
    • Year and Date
      2016-09-13
    • Related Report
      2016 Annual Research Report
  • [Presentation] 「ヒストンタンパク質のリサイクル機構」-分子シミュレーション によるアプローチ-2016

    • Author(s)
      清水将裕, 高田彰二
    • Organizer
      第4回動的クロマチン班会議
    • Place of Presentation
      ルスツリゾート(北海道)
    • Year and Date
      2016-07-07
    • Related Report
      2016 Annual Research Report
  • [Presentation] Co-translational folding reaction mechanisms studied by molecular simulations2016

    • Author(s)
      Shoji Takada
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2016-06-07
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 細胞質ダイニンの歩行運動メカニズムに関する粗子化MD計算2016

    • Author(s)
      久保進太郎, 高田彰二
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2016-06-07
    • Related Report
      2016 Annual Research Report
  • [Presentation] Multiscale Modeling of Molecular Motors and Dynamic Protein-Nucleic Acid Complexes2016

    • Author(s)
      Shoji Takada
    • Organizer
      Molecular Machines of Life: Simulation Meets Experiment
    • Place of Presentation
      Hong Kong(China)
    • Year and Date
      2016-05-23
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 粗視化シミュレーションを用いたDNA複製開始複合体のモデリング研究2016

    • Author(s)
      清水将裕
    • Organizer
      第9回京阪奈計算生物物理セミナー
    • Place of Presentation
      関西光科学研究所(木津市)
    • Year and Date
      2016-03-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] Structural insights into chromatin folding and transcriptional regulation2015

    • Author(s)
      Shoji Takada
    • Organizer
      The International Chemical Congress of Pacific basin Societies 2015
    • Place of Presentation
      Honolulu, Hawaii
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 生体分子粗視化シミュレータCafeMolとDNA/タンパク質複合体のシミュレーション2015

    • Author(s)
      検崎博生
    • Organizer
      CBI学会2015年大会
    • Place of Presentation
      タワーホール船堀(東京都)
    • Year and Date
      2015-10-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] 粗視化モデルによるダイヌクレオソーム間の相互作用とヒストンテイルの役割2015

    • Author(s)
      検崎博生、高田彰二
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] 粗視化シミュレーションから見えてきたクロマチン凝縮ダイナミクスにおけるH1 C末端変性部位の重要性2015

    • Author(s)
      白井伸宙、高田彰二
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Mechanical properties of the minute mice of virus capsid: Coarse-grained Molecular simulation.2015

    • Author(s)
      Koji Ono, Tsuyoshi Terakawa, Shoji Takada
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Interaction of replication initiator protein DnaA with dsDNA studied by molecular dynamics simulation2015

    • Author(s)
      Masahiro Shimizu and Shoji Takada
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Computational modeling of chromatin & transcription factor by coarse-grained molecular simulations2015

    • Author(s)
      Shoji Takada
    • Organizer
      Kyoto-Heidelberg Joint Workshop 2015, “Applied Mathematics, Scientific Computing, and Applications”
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      2015-08-31
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Coarse-grained modeling of flexible biomolecular complexes2015

    • Author(s)
      Shoji Takada
    • Organizer
      2015 Shanghai Symposium on Frontiers in Computational Chemistry
    • Place of Presentation
      Shanghai, China
    • Year and Date
      2015-08-24
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Disordered tail of the linker histone H1 in chromatin compaction dynamics studied by coarse-grained simulations2015

    • Author(s)
      Nobu C. Shirai and Shoji Takada
    • Organizer
      「柔らかな分子系」国際シンポジウム(第3回公開シンポジウム)
    • Place of Presentation
      日本科学未来館(東京都)
    • Year and Date
      2015-07-09
    • Related Report
      2015 Annual Research Report
  • [Presentation] リンカーヒストンH1の結合に伴うヌクレオソーム構造の凝縮ダイナミクス:H1の変性2015

    • Author(s)
      白井伸宙
    • Organizer
      第15回日本蛋白質科学会年会
    • Place of Presentation
      あわぎんホール(徳島市)
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] リンカーヒストンが引き起こすクロマチン構造のコンパクト化のダイナミクス2015

    • Author(s)
      白井伸宙
    • Organizer
      ソフトダイナミクス研究会
    • Place of Presentation
      東京大学物性研究所(柏市)
    • Year and Date
      2015-04-02
    • Related Report
      2015 Annual Research Report
  • [Presentation] Protein-DNA Complexes in crowded chromatin-like environment2015

    • Author(s)
      Shoji Takada
    • Organizer
      IPR Seminar on Molecular Crowding and Macromolecular Association
    • Place of Presentation
      大阪大学蛋白質研究所(吹田市)
    • Year and Date
      2015-02-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Structural dynamics of nucleosome by coarse-grained model2014

    • Author(s)
      検崎博生、高田彰二
    • Organizer
      The 4D NUCLEOME 2014
    • Place of Presentation
      安芸グランドホテル(廿日市)
    • Year and Date
      2014-12-17 – 2014-12-20
    • Related Report
      2014 Annual Research Report
  • [Presentation] Structural sampling of polynucleosome by coarse-grained simulations2014

    • Author(s)
      検崎博生、高田彰二
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] DNA unwinding mechanism at DNA replication initi ation of E.coli studied by coarse grained molecular dynamics simulation2014

    • Author(s)
      清水将、片山勉、高田彰二
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] English]:Coarse-grained simulation of chromatosome: H1-mediated dynamic compaction of nucleosome structure2014

    • Author(s)
      白井伸宙、高田彰二
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Structural dynamics of tri-nucleosome studied by combination of coarse grained molecular simulation and SAXS2014

    • Author(s)
      高木勇輔、小甲裕一、小田隆、立和名博昭、検崎博生、胡桃坂仁志、佐藤衛、池口満徳、高田彰二
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Knotted Structures in Refolding and Cotranslational Folding of Multi-domain Protein2014

    • Author(s)
      Shoji Takada
    • Organizer
      Biophysical Society Thematic Meeting on "Significance of Knotted Structures for Function of Proteins and Nucleic Acids"
    • Place of Presentation
      Warsaw, Poland
    • Year and Date
      2014-09-17 – 2014-09-20
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 分子動力学シミュレーションを用いた大腸菌DNA複製開始複合体の構造及び形成メカニズムの解明2014

    • Author(s)
      清水将、片山勉、高田彰二
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜(横浜市)
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Coarse-Grained Modeling of Protein-DNA complexes2014

    • Author(s)
      Shoji Takada
    • Organizer
      Workshop on "Coarse-graining as a Frontier of Statistical Mechanics"
    • Place of Presentation
      Santa Fe, USA
    • Year and Date
      2014-06-16 – 2014-06-18
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Functional Dynamics of Disordered Regions in Multi-Domain Proteins2014

    • Author(s)
      Shoji Takada
    • Organizer
      Gordon Research Conference "Protein Folding Dynamics"
    • Place of Presentation
      Texas, USA
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 分子動力学シミュレーションによる緑色蛍光タンパク質断片のフォールディング機構の研究2013

    • Author(s)
      伊藤 真志保, 高田 彰二
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      とりぎん文化会館(鳥取市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ドメインスワッピング形成機構の分子シミュレーションによる理論研究2013

    • Author(s)
      小野晃司, 高田彰二
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      とりぎん文化会館(鳥取市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Coarse-grained modeling of biomolecular systems2013

    • Author(s)
      Shoji Takada
    • Organizer
      Japan-Korea Symposium for Molecular Science
    • Place of Presentation
      ホテル北野プラザ六甲荘(神戸市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Flexibility and specificity in protein-DNA complexes2013

    • Author(s)
      Shoji Takada
    • Organizer
      International Symposium on Physical Principles and Underlying Mechanisms of Biomolecules and Materials
    • Place of Presentation
      Beijing, China
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] システム生物学におけるベイズパラメータ推定2013

    • Author(s)
      村上陽平, 高田彰二
    • Organizer
      第23回日本数理生物学会大会
    • Place of Presentation
      静岡大学浜松キャンパス(浜松市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Structure of model chromatin and dynamics of transcription factors studied by coarse-grained simulations2013

    • Author(s)
      Shoji Takada
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立国際会議場(京都市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Molecular simulation study on signaling control in yeast MAPK pathway2013

    • Author(s)
      Naoto Hori, Shoji Takada
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立国際会議場(京都市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNA unwinding mechanisms in <i>E. coli, oriC</i> region studied by coarse grained molecular dynamics simulations2013

    • Author(s)
      Shimizu Masahiro, Shoji Takada
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立国際会議場(京都市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Hierarchy in Biomolecular Systems: Chemical Reactions and Motions

    • Author(s)
      高田彰二
    • Organizer
      第848回分子研コロキウム
    • Place of Presentation
      分子科学研究所(岡崎市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Book] 生物物理55(1):計算科学と実験科学の組み合わせにより明らかになった 多剤排出トランスポーターAcrBの分子メカニズム2015

    • Author(s)
      村上聡、山根努、池口満徳、高田彰二
    • Publisher
      日本生物物理学会
    • Related Report
      2014 Annual Research Report
  • [Book] 粗視化シミュレーションと実験科学, 1分子ナノバイオ計測2014

    • Author(s)
      高田彰二、野地博幸 編
    • Publisher
      化学同人
    • Related Report
      2014 Annual Research Report

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Published: 2013-05-15   Modified: 2019-07-29  

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