Clarification of (epi)genetic mechanisms involved in the development of human imprinting disorders
Project/Area Number |
25253023
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Research Category |
Grant-in-Aid for Scientific Research (A)
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Allocation Type | Single-year Grants |
Section | 一般 |
Research Field |
Human genetics
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Research Institution | Hamamatsu University School of Medicine |
Principal Investigator |
Ogata Tsutomu 浜松医科大学, 医学部, 教授 (40169173)
|
Co-Investigator(Kenkyū-buntansha) |
KAGAMI MASAYO (独)国立成育医療研究センター研究所, 分子内分泌研究部, 室長 (70399484)
|
Project Period (FY) |
2013-04-01 – 2016-03-31
|
Project Status |
Completed (Fiscal Year 2015)
|
Budget Amount *help |
¥46,020,000 (Direct Cost: ¥35,400,000、Indirect Cost: ¥10,620,000)
Fiscal Year 2015: ¥15,600,000 (Direct Cost: ¥12,000,000、Indirect Cost: ¥3,600,000)
Fiscal Year 2014: ¥15,600,000 (Direct Cost: ¥12,000,000、Indirect Cost: ¥3,600,000)
Fiscal Year 2013: ¥14,820,000 (Direct Cost: ¥11,400,000、Indirect Cost: ¥3,420,000)
|
Keywords | インプリンティング疾患 / エピジェネティクス / 発症機序 / エピ変異 / iPS細胞 / インプリンティング / ヒト疾患 / メチル化 |
Outline of Final Research Achievements |
We have attempted to clarify underlying (epi)genetic mechanisms involved in the development of human imprinting disorders. Representative results include: (1) identification of the underlying factors, (epi)genotype-phenotype correlations in Silver-Russell syndrome, and detection of mosaic upd(11)mat, (2) identification of epimutations and clarification of (epi)genetic mechanisms and clinical features in Temple syndrome, and (3) determination of detailed clinical features, establishment of clinical diagnostic guideline and molecular diagnostic approach in Kagami-Ogata syndrome. Furthermore, we identified that the boundary of the epimutations in Temple syndrome patients, Kagami-Ogata syndrome patients, and control subjects are virtually identical. This implies that epimutations take place at the region flanked by insulators. We also established iPS cell from Kagami-Ogata syndrome patients.
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Report
(4 results)
Research Products
(147 results)
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[Journal Article] Chromosome 6q24 methylation defects are uncommon in childhood-onset non-autoimmune diabetes mellitus patients born appropriate-for-gestational age.2016
Author(s)
Okuno M, Yorifuji T, Kagami M, Ayabe T, Urakami T, Kawamura T, Kikuchi N, Yokota I, Toru Kikuchi, Amemiya S, Suzuki J, Ogata T, Sugihara S, Fukami M and The Japanese Study Group of Insulin Therapy for Childhood and Adolescent Diabetes (JSGIT)
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Journal Title
Clin Pediatr Endocrinol
Volume: 未定
Related Report
Peer Reviewed / Open Access / Int'l Joint Research
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[Journal Article] Spectrum of mutations and genotype-phenotype analysis in Noonan syndrome patients with RIT1 mutations.2016
Author(s)
Yaoita M, Niihori T, Mizuno S, Okamoto N, Hayashi S, Watanabe A, Yokozawa M, Suzumura H, Nakahara A, Nakano Y, Hokosaki T, Ohmori A, Sawada H, Migita O, Mima A, Lapunzina P, Santos-Simarro F, García-Miñaúr S, Ogata T, Kawame H, Kurosawa K, Ohashi H, Inoue S, Matsubara Y, Kure S, Aoki Y.
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Journal Title
Hum Genet.
Volume: 135
Issue: 2
Pages: 209-222
DOI
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Peer Reviewed / Int'l Joint Research
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[Journal Article] Multiple Androgen Biosynthesis Pathways Are Operating in Women with Polycystic Ovary Syndrome.2016
Author(s)
Saito K, Matsuzaki T, Iwasa T, Miyado M, Saito H, Hasegawa T, Homma K, Inoue E, Kubota T, Irahara M, Ogata T, Fukami M
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Journal Title
J Steroid Biochem Mol Biol
Volume: 158
Pages: 31-37
DOI
Related Report
Peer Reviewed / Int'l Joint Research
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[Journal Article] Systematic molecular analyses of SHOX in Japanese patients with idiopathic short stature and Leri-Weill dyschondrosteosis.2016
Author(s)
Shima H, Tanaka T, Kamimaki T, Dateki S, Muroya K, Horikawa R, Kanno J, Adachi M, Naiki Y, Tanaka H, Mabe H, Yagasaki H, Kure S, Matsubara Y, Tajima T, Kashimada K, Ishii T, Asakura Y, Fujiwara I, Soneda S, Nagasaki K, Hamajima T, Kanzaki S, Jinno T, Ogata T, Fukami M
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Journal Title
J Hum Genet
Volume: 未定
Issue: 7
Pages: 585-591
DOI
NAID
Related Report
Peer Reviewed / Int'l Joint Research
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[Journal Article] Novel HPS6 mutations identified by whole-exome sequencing in two Japanese sisters with suspected ocular albinism.2016
Author(s)
Miyamichi D, Asahina M, Nakajima J, Sato M, Hosono K, Nomura T, Negishi T, Miyake N, Hotta Y, Ogata T, Matsumoto N
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Journal Title
NAID
Related Report
Peer Reviewed / Int'l Joint Research
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[Journal Article] Copy-number variations in Y chromosomal azoospermia factor regions identified by multiplex ligation-dependent probe amplification2015
Author(s)
Saito K, Miyado M, Kobori Y, Tanaka Y, Ishikawa H, Yoshida A, Katsumi M, Saito H, Kubota T, Okada H, Ogata T, Fukami M
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Journal Title
J Hum Genet
Volume: 60(3)
Issue: 3
Pages: 127-31
DOI
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Peer Reviewed
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[Journal Article] Detecting copy number variations in whole exome sequencing data using exome hidden markov model - an expectation of “exome-first” approach.2015
Author(s)
Miyatake S, Koshimizu E, Fujita A, Fukai R, Imagawa E, Ohba C, Kuki I, Makita Y, Ogata T, Nakashima M, Tsurusaki Y, Miyake N, Saitsu H, Matsumoto N
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Journal Title
J Hum Genet
Volume: 1
Issue: 4
Pages: 124-124
DOI
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Peer Reviewed / Open Access
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[Journal Article] Rare pseudoautosomal copy-number variations involving SHOX and/or its flanking regions in individuals with and without short stature.2015
Author(s)
Fukami M, Naiki Y, Muroya K, Hamajima T, Soneda S, Horikawa R, Jinno T, Katsumi M, Nakamura A, Asakura Y, Adachi M, Ogata T, Kanzaki S; Japanese SHOX study group
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Journal Title
J Hum Genet
Volume: 60
Issue: 9
Pages: 553-556
DOI
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Peer Reviewed / Int'l Joint Research
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[Journal Article] Loss-of-Function SOX10 Mutation in a Patient with Kallmann Syndrome, Hearing Loss, and Iris Hypopigmentation.2015
Author(s)
Suzuki E, Izumi Y, Chiba Y, Horikawa R, Matsubara Y, Tanaka M, Ogata T, Fukami M, Naiki Y.
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Journal Title
Hormone Research in Paediatrics
Volume: 84
Issue: 3
Pages: 212-216
DOI
Related Report
Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
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[Journal Article] Expanding the Spectrum of Founder Mutations Causing Isolated Gonadotropin-Releasing Hormone Deficiency.2015
Author(s)
Choi JH, Balasubramanian R, Lee PH, Shaw ND, Hall JE, Plummer L, Buck CL, Kottler ML, Jarzabek K, Wolczynski S, Quinton R, Latronico AC, Dode C, Ogata T, Kim HG, Layman LC, Gusella JF, Crowley WF Jr
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Journal Title
J Clin Endocrinol Metab
Volume: 100
Issue: 10
Pages: E1378-E1385
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Peer Reviewed / Int'l Joint Research
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[Journal Article] Human chorionic gonadotropin stimulation test in prepubertal children with micropenis can accurately predict Leydig cell function in pubertal or postpubertal adolescents.2015
Author(s)
Ishii T, Matsuo N, Amano N, Hori N, Inokuchi M, Sasaki G, Kamimaki T, Anzo M, Tamai S, Ogata T, Sato S, Hasegawa T
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Journal Title
Horm Res Paediatr
Volume: 87
Issue: 5
Pages: 305-310
DOI
Related Report
Peer Reviewed / Int'l Joint Research
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[Journal Article] Lack of Skeletal Dysplasia in Patients with Missense Mutations and Upstream Deletion of SOX9.2015
Author(s)
Katoh-Fukui Y, Igarashi M, Nagasaki K, Horikawa R, Nagai T, Tsuchiya T, Suzuki E, Miyado M, Hata K, Nakabayashi K, Hayashi K, Matsubara Y, Baba T, Morohashi K, Igarashi A, Ogata T, Takada S, and Fukami M
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Journal Title
Molecular Genetics & Genomic Medicine
Volume: 3
Issue: 6
Pages: 550-557
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Peer Reviewed / Open Access / Int'l Joint Research
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[Journal Article] Development of waist circumference percentiles for Japanese children and an examination of their screening utility for childhood metabolic syndrome: a population-based cross-sectional study.2015
Author(s)
Matsushita R, Isojima T, Takaya R, Satake E, Yamaguchi R, Kitsuda K, Nagata E, Sano S, Nakanishi T, Nakagawa Y, Ohzeki T, Ogata T, Fujisawa Y.
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Journal Title
BMC Public Health
Volume: 13
Issue: 1
Pages: 1121-1121
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Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
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[Journal Article] A 45,X/46,XY DSD (Disorder of Sexual Development) case with an extremely uneven distribution of 46,XY cells between lymphocytes and gonads2015
Author(s)
Nomura R, Miyai K, Okada M, Kajiwara M, Ono M, Ogata T, Onishi I, Sato M, Sekine M, Akashi T, Mizutani S, Kashimada K
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Journal Title
Clinical Pediatric Endocrinology
Volume: 24
Issue: 1
Pages: 11-14
DOI
NAID
ISSN
0918-5739, 1347-7358
Related Report
Peer Reviewed
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[Journal Article] Molecular basis of non-syndromic hypospadias: Systematic mutation screening and genome-wide copy-number analysis of 62 patients.2015
Author(s)
Kon M, Suzu ki E, Dung VC, Hasegawa Y, Mitsui T, Muroya K, Ueoka K, Igarashi N, Nagasaki K, Oto Y, Hamajima T, Yoshino K, Igarashi M, Kato-Fukui Y, Nakabayashi K, Hayashi K, Hata K, Matsubara Y, Moriya K, Ogata T, Nonomura K, Fukami M
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Journal Title
Hum Reprod
Volume: 30(3)
Issue: 3
Pages: 499-506
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Peer Reviewed / Open Access / Acknowledgement Compliant
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[Journal Article] Microhomology-Mediated Microduplication in the Y Chromosomal Azoospermia Factor a (AZFa) Region in a Male with Mild Asthenozoospermia.2015
Author(s)
Katsumi M, Ishikawa H, Tanaka Y, Saito K, Kobori Y, Okada H, Saito H, Nakabayashi K, Matsubara Y, Ogata T, Fukami M, Miyado M
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Journal Title
Cytogenet Genome Res
Volume: 3
Issue: 4
Pages: 1-1
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Peer Reviewed
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[Journal Article] IMAGe syndrome: clinical and genetic implications based on Iinvestigations in three Japanese patients.2014
Author(s)
Kato F, Hamajima T, Hasegawa T, Amano N, Horikawa R, Nishimura G, Nakashima S, Fuke T, Sano S, Fukami M, Ogata T
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Journal Title
Clin Endocrinol
Volume: 80 (5)
Issue: 5
Pages: 706-713
DOI
Related Report
Peer Reviewed / Acknowledgement Compliant
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[Journal Article] Genome-wide parent-of-origin DNA methylation analysis reveals the intricacies of the human imprintome and suggests a germline methylation independent establishment of imprinting.2014
Author(s)
Court F, Tayama C, Romanelli V, Martin-Trujillo A, Iglesias-Platas I, Okamura K, Sugahara N, Simon C, Moore H, Harness J, Keirstead H, Vicente Sanchez-Mut J, Kaneki E, Lapunzina P, Soejima H, Wake N, Esteller M, Ogata T, Hata K, Nakabayashi K, Monk D*
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Journal Title
Genome Res
Volume: in press
Issue: 4
Pages: 554-569
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Peer Reviewed / Open Access
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[Journal Article] TBX1 Mutation Identified by Exome Sequencing in a Japanese Family with 22q11.2 Deletion Syndrome-like Craniofacial Features and Hypocalcemia.2014
Author(s)
Ogata T*, Niihori T, Tanaka N, Kawai M, Nagashima T, Funayama R, Nakayama K, Nakashim S, Kato F, Fukami M, Aoki Y, Matsubara Y
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Journal Title
PLoS One
Volume: 9
Issue: 3
Pages: e91598-e91598
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Peer Reviewed / Open Access
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[Journal Article] A missense single-nucleotide polymorphism in the sialic acid acetyl esterase gene is associated with anti-PIT-1 antibody syndrome.2014
Author(s)
Yamamoto M, Iguchi G, Bando H, Fukuoka H, Suda K, Takahashi M, Nishizawa H, Matsumoto R, Tojo K, Mokubo A, Ogata T, Takahashi Y
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Journal Title
Endocr J
Volume: 61 (6)
Pages: 641-644
Related Report
Peer Reviewed / Open Access
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[Journal Article] Mutation Spectrum and Phenotypic Variation in Nine Patients with SOX2 abnormalities2014
Author(s)
Suzuki J, Azuma N, Dateki S, Soneda S, Muroya K, Yamamoto Y, Saito R, Sano S, Nagai T, Wada H, Endo A, Urakami T, Ogata T, Fukami M
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Journal Title
J Hum Genet
Volume: 59 (6)
Issue: 6
Pages: 353-356
DOI
Related Report
Peer Reviewed / Acknowledgement Compliant
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[Journal Article] Rationale and study design of the Japan environment and children’s study (JECS)2014
Author(s)
Kawamoto T, Nitta H, Murata K, Toda E, Tsukamoto N, Hasegawa M, Yamagata Z, Kayama F, Kshi R, Ohya Y, Saito H, Sago H, Okuyama M, Ogata T, Yokoya S, Koresawa Y, Shibata Y, Nakayama S, Michikawa T, Takeuchi A, Saitoh H
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Journal Title
BMC Public Health
Volume: 14
Issue: 1
Pages: 25-25
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Peer Reviewed / Open Access
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[Journal Article] Comprehensive and quantitative multilocus methylation analysis reveals the susceptibility of specific imprinted differentially methylated regions (DMRs) to aberrant methylation in Beckwith-Wiedemann syndrome with epimutations2014
Author(s)
Maeda T, Higashimoto K, Jozaki K, Hitomi H, Nakabayashi K, Makita Y, Tonoki H, Okamoto N, Takada F, Ohashi H, Migita M, Kosaki R, Matsubara K, Ogata T, Matsuo M, Hamasaki Y, Ohtsuka Y, Nishioka K, Joh K, Mukai T, Hata K, Soejima H
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Journal Title
Genet Med
Volume: 16(12)
Issue: 12
Pages: 903-912
DOI
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Peer Reviewed / Open Access
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[Journal Article] Genome-wide copy number analysis and systematic mutation screening in 58 patients with hypogonadotropic hypogonadism2014
Author(s)
Izumi Y, Suzuki E, Kanzaki S, Yatsuga S, Kinjo S, Igarashi M, Maruyama T, Sano S, Horikawa R, Sato N, Nakabayashi K, Hata K, Umezawa A, Ogata T, Yoshimura Y, Fukami M*
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Journal Title
Fertil Steril
Volume: 102 (4)
Pages: 1130-1136
Related Report
Peer Reviewed / Acknowledgement Compliant
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[Journal Article] Japanese founder duplications/triplications involving BHLHA9 are associated with split-hand/foot malformation with or without long bone deficiency and Gollop-Wolfgang complex.2014
Author(s)
Nagata E, Kano H, Kato F, Yamaguchi R, Nakashima S, Takayama S, Kosaki R, Tonoki H, Mizuno S, Watanabe S, Yoshiura KI, Kosho T, Hasegawa T, Kimizuka M, Suzuki A, Shimizu K, Ohashi H, Haga N, Numabe H, Horii E, Nagai T, Yoshihashi H, Nishimura G, Toda T, et al.
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Journal Title
Orphanet J Rare Dis
Volume: 9
Issue: 1
Pages: 125-125
DOI
Related Report
Peer Reviewed / Open Access
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[Journal Article] A missense single-nucleotide polymorphism in the sialic acid acetylesterase (<i>SIAE</i>) gene is associated with anti–PIT-1 antibody syndrome2014
Author(s)
Yamamoto M, Iguchi G, Bando H, Fukuoka H, Suda K, Takahashi M, Nishizawa H, Matsumoto R, Tojo K, Mokubo A, Ogata T, Takahashi Y
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Journal Title
Endocrine Journal
Volume: 61
Issue: 6
Pages: 641-644
DOI
NAID
ISSN
0918-8959, 1348-4540
Related Report
Peer Reviewed / Open Access
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[Journal Article] Mutation Spectrum and Phenotypic Variation in Nine Patients with SOX2 abnormalities.2014
Author(s)
Fukami M*, Suzuki J, Azuma N, Dateki S, Soneda S, Muroya K, Yamamoto Y, Saito R, Sano S, Nagai T, Wada H, Endo A, Urakami T, Ogata T
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Journal Title
J Hum Genet
Volume: in press
Related Report
Peer Reviewed
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[Journal Article] A missense single-nucleotide polymorphism in the sialic acid acetyl esterase gene is associated with anti-PIT-1 antibody syndrome.2014
Author(s)
Yamamoto M, Iguchi G, Bando H, Fukuoka H, Suda K, Takahashi M, Nishizawa H, Matsumoto R, Tojo K, Mokubo A, Ogata T, Takahashi Y*
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Journal Title
Endocr J
Volume: in press
Related Report
Peer Reviewed
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[Journal Article] De novo frameshift mutation in fibroblast growth factor 8 in a male patient with gonadotropin deficiency2013
Author(s)
Suzuki E, Yatsuga S, Igarashi M, Miyado M, Nakabayashi K, Hayashi K, Hata K, Umezawa A, Yamada G, Ogata T, Fukami M*
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Journal Title
Horm Res Paediatr ,
Volume: 81
Issue: 2
Pages: 139-144
DOI
Related Report
Peer Reviewed / Open Access
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[Journal Article] A novel de novo point mutation of OCT-binding site in the IGF2/H19-imprinting control region in a patient with Beckwith-Wiedemann syndrome.2013
Author(s)
Higashimoto K, Jozaki K, Kosho T, Matsubara K, Sato T, Yamada D, Yatsuki H, Maeda T, Ohtsuka Y, Nishioka K, Joh K, Koseki H, Ogata T, SoejimaH*
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Journal Title
Clin Genet
Volume: in press
Issue: 6
Pages: 539-544
DOI
Related Report
Peer Reviewed / Open Access
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[Journal Article] Comprehensive and quantitative multilocus methylation analysis reveals the susceptibility of specific imprinted differentially methylated regions (DMRs) to aberrant methylation in Beckwith-Wiedemann syndrome with epimutations.2013
Author(s)
Maeda T, Higashimoto K, Jozaki K, Yatsuki H, Nakabayashi K, Makita Y, Tonoki H, Okamoto N, Takada F, Ohashi H, Migita M, Kosaki R, Matsubara K, Ogata T, Matsuo M, Hamasaki Y, Ohtsuka Y, Nishioka K, Joh K, Mukai T, Hata K, Soejima H*
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Journal Title
Genet Med
Volume: in press
Related Report
Peer Reviewed
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[Journal Article] Genomic basis of aromatase excess syndrome: recombination- and replication-mediated rearrangements leading to CYP19A1 overexpression.2013
Author(s)
Fukami M*, Tsuchiya T, Vollbach H, Brown KA, Abe S, Ohtsu S, Wabitsch M, Gurger H, Sompson ER, Emezawa A, Nakabayashi K, Bulun SE, Shozu M, Ogata T
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Journal Title
J Clin Endocrinol Metab
Volume: 98
Issue: 12
Pages: E2013-E2021
DOI
Related Report
Peer Reviewed
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[Journal Article] The lipid fraction of human milk initiates adipocyte differentiation in 3T3-L1 cells.2013
Author(s)
Fujisawa Y*, Yamaguchi R, Nagata E, Satake E, Sano S, Matsushita R, Kitsuta K, Nakashima S, Nakanishi T, Nakagawa Y, Ogata T
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Journal Title
Early Hum Dev
Volume: Epub ahead of print
Issue: 9
Pages: 713-719
DOI
Related Report
Peer Reviewed
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[Journal Article] A 68-year-old phenotypically male patient with 21-hydroxylase deficiency and concomitant adrenocortical neoplasm producing testosterone and cortisol.2013
Author(s)
Hayashi M*, Kataoka Y, Sugimura Y, Kato F, Fukami M, Ogata T, Homma K, Hasegawa T, Oiso Y, Sasano H, Tanaka H
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Journal Title
Tohoku J Exp Med
Volume: 231
Pages: 75-84
NAID
Related Report
Peer Reviewed
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[Journal Article] Cryptic genomic rearrangements in three patients with 46,XY disorders of sex development.2013
Author(s)
Igarashi M, Dung VC, Suzuki E, Ida S, Nakacho M, Nakabayashi K, Mizuno K, Hayashi Y, Kohri K, Kojima Y, Ogata T, Fukami M*
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Journal Title
Related Report
Peer Reviewed
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[Journal Article] Gain-of-function mutations in RIT1 cause Noonan syndrome, a RAS/MAPK pathway syndrome.2013
Author(s)
Aoki Y*, Niihori T, Banjo T, Okamoto N, Mizuno S, Kurosawa K, Ogata T, Takada F, Yano M, Ando T, Hoshika T, Barnett C, Ohashi H, Kawame H, Hasegawa T, Okutani T, Nagashima T, Hasegawa S, Funayama R, Nagashima T, Nakayama K, Inoue S, Watanabe Y, Ogura T, Matsubara Y
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Journal Title
Am J Hum Genet
Volume: 93
Pages: 173-180
Related Report
Peer Reviewed
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[Journal Article] Human glutathione S-transferase A (GSTA) family genes are regulated by steroidogenic factor 1 (SF-1) and are involved in steroidogenesis.2013
Author(s)
Matsumura T, Imamichi Y, Mizutani T, Ju Y, Yazawa T, Kawabe S, Kanno M, Ayabe T, Katsumata N, Fukami M, Inatani M, Akagi Y, Umezawa A, Ogata T, Miyamoto K
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Journal Title
FASEB J
Volume: 27
Issue: 8
Pages: 3198-3208
DOI
Related Report
Peer Reviewed
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[Journal Article] Molecular and clinical studies in 138 Japanese patients with Silver-Russell syndrome.2013
Author(s)
Fuke T, Mizuno S, Nagai T, Hasegawa T, Horikawa R, Miyoshi Y, Muroya K, Kondoh T, Numakura C, Sato S, Nakabayashi K, Tayama C, Hata K, Sano S, Matsubara K, Kagami M, Yamazawa K, Ogata T*
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Peer Reviewed
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[Presentation] Various Imprinting Disorders Underlying Silver-Russell Syndrome-Compatible Phenotype2015
Author(s)
Masayo Kagami,Keiko Matsubara,Shinichiro Sano,Akie Nakamura,Seiji Mizuno,Naoki Hamajima,Atsuhiro Yanagisawa,Miyuki Hashimoto,Akira Yukote,Maki Fukami,Tsutomu Ogata
Organizer
ESPE BARCELONA 54th Annual Meeting
Place of Presentation
Barcelona
Year and Date
2015-10-01
Related Report
Int'l Joint Research
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[Presentation] わかりやすい臨床遺伝学2014
Author(s)
緒方 勤
Organizer
第9回日本小児耳鼻咽喉科学会
Place of Presentation
浜松
Year and Date
2014-06-06 – 2014-06-07
Related Report
Invited
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