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Molecular basis of metabolic physiology of C1-microorganisms and its application in methanol economy

Research Project

Project/Area Number 25281063
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Design and evaluation of sustainable and environmental conscious system
Research InstitutionKyoto University

Principal Investigator

YURIMOTO Hiroya  京都大学, (連合)農学研究科(研究院), 准教授 (00283648)

Co-Investigator(Renkei-kenkyūsha) SAKAI Yashuyoshi  京都大学, 大学院農学研究科, 教授 (60202082)
OKU Masahide  京都大学, 大学院農学研究科, 助教 (10511230)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000)
Fiscal Year 2015: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2014: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2013: ¥8,060,000 (Direct Cost: ¥6,200,000、Indirect Cost: ¥1,860,000)
Keywordsメタノール資化性酵母 / 転写因子 / C1化合物代謝 / メタン / メタノール / ホルムアルデヒド / 硝酸 / メチルアミン
Outline of Final Research Achievements

For the purpose of development of novel biotechnology that can be applied in low carbon society “methanol economy”, we have studied molecular basis of metabolic physiology of C1-microorganisms that can utilize C1 compounds, such as methane and methanol, and its application. We focused on two major useful traits of methylotrophic yeasts, “strong methanol-inducible gene expression” and “ability to proliferate at the phyllosphere”. For example, molecular function of the transcriptional factor complex responsible for methanol-inducible gene expression was elucidated. Furthermore, we revealed nitrogen utilization and its regulation of the methylotrophic yeast at the phyllosphere.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (29 results)

All 2016 2015 2014 2013 Other

All Journal Article (18 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 14 results,  Acknowledgement Compliant: 5 results,  Open Access: 4 results) Presentation (10 results) (of which Int'l Joint Research: 3 results,  Invited: 8 results) Book (1 results)

  • [Journal Article] The unique C-terminal region of Hap3 is required for methanol-regulated gene expression in the methylotrophic yeast Candida boidinii2016

    • Author(s)
      Saori Oda, Hiroya Yurimoto, Nobuhisa Nitta, and Yasuyoshi Sakai
    • Journal Title

      Microbiology

      Volume: 印刷中 Issue: 5 Pages: 898-907

    • DOI

      10.1099/mic.0.000275

    • NAID

      120007181191

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems2015

    • Author(s)
      Richard Hamilton, K. Dimitri Kits, Victoria A. Ramonovskaya, Olga N. Rozova, Hiroya Yurimoto, Hiroyuki Iguchi, Valentina N. Khmelenina, Yasuyoshi Sakai, et al.
    • Journal Title

      Genome Announc.

      Volume: 3 Issue: 3

    • DOI

      10.1128/genomea.00515-15

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Regulation of nitrate and methylamine metabolism by multiple nitrogen sources in the methylotrophic yeast Candida boidinii2015

    • Author(s)
      Kosuke Shiraishi, Masahide Oku, Daichi Uchida, Hiroya Yurimoto, Yasuyoshi Sakai
    • Journal Title

      FEMS Yeast Research

      Volume: 15 Pages: fov084-fov084

    • DOI

      10.1093/femsyr/fov084

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] C1微生物-植物共生系によるC1炭素固定と植物生長促進2015

    • Author(s)
      由里本博也、阪井康能
    • Journal Title

      光合成研究

      Volume: 25 Pages: 92-99

    • NAID

      40020570695

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] C1微生物の巧妙なストレス適応機構と多様な生育環境での生存戦略2015

    • Author(s)
      由里本博也、阪井康能
    • Journal Title

      極限環境生物学会誌

      Volume: 14 Pages: 52-60

    • NAID

      40020753808

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular characterization of Hap complex components responsible for methanol-inducible gene expression in the methylotrophic yeast Candida boidinii2015

    • Author(s)
      S. Oda, H. Yurimoto, N. Nitta, Y. Sasano, and Y. Sakai
    • Journal Title

      Eukaryot. Cell

      Volume: 14 Issue: 3 Pages: 278-285

    • DOI

      10.1128/ec.00285-14

    • NAID

      120005593631

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Interactions of methylotrophs with plants and other hHeterotrophic bacteria2015

    • Author(s)
      H. Iguchi, H. Yurimoto, and Y. Sakai
    • Journal Title

      Microorganisms

      Volume: 3 Issue: 2 Pages: 137-151

    • DOI

      10.3390/microorganisms3020137

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Yeast nitrogen utilization in the phyllosphere during plant lifespan under regulation of autophagy2015

    • Author(s)
      K. Shiraishi, M. Oku, K. Kawaguchi, D. Uchida, H. Yurimoto, and Y. Sakai
    • Journal Title

      Sci. Rep.

      Volume: 5 Issue: 1 Pages: 9719-9719

    • DOI

      10.1038/srep09719

    • NAID

      120005615631

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Methyloparacoccus murrellii gen. nov., sp. nov., a methanotroph isolated from pond water2014

    • Author(s)
      S. Hoefman, D. van der Ha, H. Iguchi, H. Yurimoto, Y. Sakai, N. Boon, P. Vandamme, K. Heylen, and P. de Vos
    • Journal Title

      Int. J. Syst. Evol. Microbiol.

      Volume: 64 Issue: Pt_6 Pages: 2100-2107

    • DOI

      10.1099/ijs.0.057760-0

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Xylitol Production by Thermotolerant Methylotrophic Yeast Ogataea siamensis and Its Xylose Reductase Gene (XYL1) Cloning2014

    • Author(s)
      W. Boontham, N. Srisuk, K. Kokaew, P. Treeyoung, S. Limtong, A. Thamchaipenet、 and H. Yurimoto
    • Journal Title

      Chiang Mai J. Sci.

      Volume: 41 Pages: 491-502

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Aquatic plant surface as a niche for methanotrophs.2014

    • Author(s)
      Yoshida N, Iguchi H, Yurimoto H, Murakami A, Sakai Y
    • Journal Title

      Frontiers in Microbiology / Terrestrial Microbiology

      Volume: 5 Pages: 1-8

    • DOI

      10.3389/fmicb.2014.00030

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] 植物から放出されるC1化合物と微生物―植物間相互作用による炭素循環2014

    • Author(s)
      由里本博也、阪井康能
    • Journal Title

      AROMA RESEARCH

      Volume: 15 Pages: 80-84

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Expression of a codon-optimized Aspergillus niger pectin methylesterase gene in the methylotrophic yeast Candida boidinii.2014

    • Author(s)
      K. Kawaguchi, H. Yurimoto, and Y. Sakai
    • Journal Title

      Biosci. Biotechnol. Biochem.

      Volume: 78

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dominant Colonization and Inheritance of <i>Methylobacterium</i> sp. Strain OR01 on Perilla Plants2013

    • Author(s)
      Mizuno M, Yurimoto H, Iguchi H, Tani A, Sakai Y
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 77 Issue: 7 Pages: 1533-1538

    • DOI

      10.1271/bbb.130207

    • NAID

      10031190465

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] C1微生物代謝経路の省エネ型炭素固定系としての利用とその問題点2013

    • Author(s)
      由里本博也、阪井康能
    • Journal Title

      生物工学会誌

      Volume: 91 Pages: 384-387

    • Related Report
      2013 Annual Research Report
  • [Journal Article] C1微生物複合生物系が駆動する炭素循環(メタンサイクル)2013

    • Author(s)
      由里本博也、井口博之、阪井康能
    • Journal Title

      生物の科学 遺伝

      Volume: 67 Pages: 591-595

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Stress resistance and C1 metabolism involved in plant colonization of a methanotroph Methylosinus sp. B4S.2013

    • Author(s)
      H. Iguchi, I. Sato, H. Yurimoto, and Y. Sakai.
    • Journal Title

      Arch. Microbiol.

      Volume: 195 Issue: 10-11 Pages: 2161-2162

    • DOI

      10.1007/s00203-013-0922-6

    • NAID

      120005526706

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 葉面に棲息するC1微生物:共生系による炭素循環と環境バイオへの利用2013

    • Author(s)
      阪井康能、由里本博也
    • Journal Title

      環境バイオテクノロジー学会誌

      Volume: 13 Pages: 79-84

    • Related Report
      2013 Annual Research Report
  • [Presentation] Studies on C1-microorganisms and their applications in biotechnology2015

    • Author(s)
      Hiroya Yurimoto
    • Organizer
      The 1st KU-KUGSA Bilateral Symposium on “Food, Environment and Life for the Next Generation”
    • Place of Presentation
      バンコク(タイ)
    • Year and Date
      2015-12-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Symbiotic interaction between C1-microorganisms and plants and its applications2015

    • Author(s)
      Hiroya Yurimoto
    • Organizer
      International Symposium on Microbial Research and Biotechnology for Biomass Utilization
    • Place of Presentation
      JR博多シティ(福岡県・福岡市)
    • Year and Date
      2015-11-12
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Transcription factors involved in regulation of methanol-inducible gene expression in the methylotrophic yeast2015

    • Author(s)
      Hiroya Yurimoto
    • Organizer
      32nd International Specialized Symposium on Yeasts (ISSY32)
    • Place of Presentation
      ペルージャ(イタリア)
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] C1微生物の巧妙なストレス適応機構と多様な生育環境での生存戦略2015

    • Author(s)
      由里本博也
    • Organizer
      極限環境生物学会第16回シンポジウム「極限環境生物が秘めるストレス適応能力」
    • Place of Presentation
      京都大学(京都府・京都市)
    • Year and Date
      2015-06-06
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 植物から放出されるC1化合物と葉面微生物-植物間相互作用によるC1炭素循環2014

    • Author(s)
      由里本博也、阪井康能
    • Organizer
      第4回生物起源微量ガスワークショップ
    • Place of Presentation
      文部科学省研究交流センター(茨城県・つくば市)
    • Year and Date
      2014-11-20 – 2014-11-21
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Metabolic alteration by introducing bifunctional formaldehyde-fixing enzyme into the methylotrophic bacteria2014

    • Author(s)
      H. Yurimoto, D. Kajihara, and Y. Sakai
    • Organizer
      Gordon Research Conference on Molecular basis of microbial one-carbon metabolism
    • Place of Presentation
      South Hadley, MA(米国)
    • Year and Date
      2014-08-10 – 2014-08-15
    • Related Report
      2014 Annual Research Report
  • [Presentation] Molecular characterization of Hap complex components responsible for methanol-inducible gene expression in the methylotrophic yeast Candida boidinii2014

    • Author(s)
      S. Oda, H. Yurimoto, and Y. Sakai
    • Organizer
      Gordon Research Conference on Molecular basis of microbial one-carbon metabolism
    • Place of Presentation
      South Hadley, MA(米国)
    • Year and Date
      2014-08-10 – 2014-08-15
    • Related Report
      2014 Annual Research Report
  • [Presentation] 微生物ホルムアルデヒド代謝の戦略的活用2014

    • Author(s)
      由里本博也、阪井康能
    • Organizer
      日本農芸化学会2014年度大会シンポジウム 「アルデヒドのバイオサイエンス ―生物の多様なアルデヒド代謝系とその戦略的活用―」
    • Place of Presentation
      明治大学(川崎市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Metabolic alteration by introducing bifunctional formaldehyde-fixing enzyme into the methylotrophic bacterium2013

    • Author(s)
      H. Yurimoto, D. Kajihara, and Y. Sakai
    • Organizer
      V International Conference on Environmental, Industrial and Applied Microbiology
    • Place of Presentation
      マドリッド(スペイン)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 植物から放出されるC1化合物と微生物-植物間相互作用による炭素循環

    • Author(s)
      由里本博也、阪井康能
    • Organizer
      第252回生存圏シンポジウム 「植物アロマのメタ代謝科学 ~生態学、大気科学、植物科学の融合~」
    • Place of Presentation
      京都大学(宇治市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Book] オルガネラタンパク質の輸送・分解の分子基盤と有用タンパク質生産 -メタノール資化性酵母の発達したペルオキシソームの利用 「酵母の生命科学と生物工学 産業応用から基礎科学へ」2013

    • Author(s)
      阪井康能、由里本博也、奥公秀
    • Publisher
      化学同人
    • Related Report
      2013 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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