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Single molecule sequencing using graphene

Research Project

Project/Area Number 25286031
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Nanobioscience
Research InstitutionOsaka University

Principal Investigator

Tanaka Hiroyuki  大阪大学, 産業科学研究所, 助教 (20314429)

Project Period (FY) 2013-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥14,430,000 (Direct Cost: ¥11,100,000、Indirect Cost: ¥3,330,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2015: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2014: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2013: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Keywordsグラフェン / DNA / 1分子 / 可視化 / 顕微鏡 / STM / AFM / シークエンシング / 基板 / 走査プローブ顕微鏡 / ナノバイオ / 表面・界面物性 / 核酸 / ゲノム / SPM / ニッケル / 白金 / 薄膜 / 表面 / 真空
Outline of Final Research Achievements

The author have applied the latest method of theoretical calculations and graphene substrate to the base identification method (Nature sister paper) by DNA extension and fixation method (established patent, developed by the author) and scanning tunneling microscope (STM). By optimizing experimental conditions such as adoption, the author aimed at single molecule sequencing of all four kinds of bases. As a result, the author succeeded in sequencing not only guanine base but also adenine base. It is an important result as it is possible to know all four kinds of base molecules as complementarity of the DNA base only by sequencing adenine base and guanine base of one double stranded DNA.

Report

(6 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (26 results)

All 2018 2017 2016 2015 2014 2013 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results,  Open Access: 5 results,  Acknowledgement Compliant: 6 results) Presentation (16 results) (of which Int'l Joint Research: 6 results) Remarks (2 results)

  • [Journal Article] Atomically flat platinum films grown on synthetic mica2018

    • Author(s)
      Tanaka Hiroyuki、Taniguchi Masateru
    • Journal Title

      Japanese Journal of Applied Physics

      Volume: 57 Issue: 4 Pages: 048001-048001

    • DOI

      10.7567/jjap.57.048001

    • NAID

      210000148846

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sequencing of adenine in DNA by scanning tunneling microscopy2017

    • Author(s)
      Tanaka Hiroyuki、Taniguchi Masateru
    • Journal Title

      Japanese Journal of Applied Physics

      Volume: 56 Issue: 8S1 Pages: 08LB02-08LB02

    • DOI

      10.7567/jjap.56.08lb02

    • NAID

      210000148177

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single crystalline epitaxial platinum film on Al2O3(0001) prepared by oxygen-doped sputtering deposition2017

    • Author(s)
      Hiroyuki Tanaka and Masateru Taniguchi
    • Journal Title

      Japanese Journal of Applied Physics

      Volume: 56 Issue: 5 Pages: 058001-058003

    • DOI

      10.7567/jjap.56.058001

    • NAID

      210000147743

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Sequencing of adenine in DNA by STM2017

    • Author(s)
      Hiroyuki Tanaka and Masateru Taniguchi
    • Journal Title

      Japanese Journal of Applied Physics

      Volume: 56

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 合成マイカ上の原子レベルで平坦なNi膜基板の作成方法2017

    • Author(s)
      田中裕行, 谷口正輝
    • Journal Title

      表面科学

      Volume: 印刷中

    • NAID

      130005815218

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Atomically flat nickel film grown on synthetic mica2016

    • Author(s)
      Hiroyuki Tanaka and Masateru Taniguchi
    • Journal Title

      Japanese Journal of Applied Physics

      Volume: 55 Issue: 7 Pages: 078003-078005

    • DOI

      10.7567/jjap.55.078003

    • NAID

      210000146771

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Single-crystalline epitaxial platinum film on yttrium-stabilized zirconia (111) prepared by sputtering deposition2016

    • Author(s)
      Hiroyuki Tanaka and Masateru Taniguchi
    • Journal Title

      Japanese Journal of Applied Physics

      Volume: 55 Issue: 12 Pages: 120304-120307

    • DOI

      10.7567/jjap.55.120304

    • NAID

      210000147280

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Atomically flat nickel film grown on synthetic mica2016

    • Author(s)
      Hiroyuki Tanaka, Masateru Taniguchi
    • Journal Title

      Japanese Jounal of Applied Physics

      Volume: -

    • NAID

      210000146771

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] グラフェンに吸着した DNA の SPM 観2018

    • Author(s)
      田中裕行 ,谷口正輝
    • Organizer
      応用物理学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] DNA中のアデニンのSTMによるシークエンシング2017

    • Author(s)
      田中裕行, 谷口正輝
    • Organizer
      応用物理学会春季学術講演会
    • Place of Presentation
      神奈川県横浜市西区みなとみらい
    • Year and Date
      2017-03-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] SPM imaging of DNA on Graphene surface2017

    • Author(s)
      Hiroyuki Tanaka and Masateru Taniguchi
    • Organizer
      11th International Symposium on Atomic Level Characterizations for New Materials and Devices ‘17
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Scanning Probe Microscope Imaging of DNA Molecules on Graphene Surface2017

    • Author(s)
      Hiroyuki Tanaka and Masateru Taniguchi
    • Organizer
      The 25th International Colloquium on Scanning Probe Microscopy
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Sequencing of single-stranded DNA on Cu(111) by STM and DFT with Dispersion Correction2016

    • Author(s)
      Hiroyuki Tanaka and Masateru Taniguchi
    • Organizer
      The 24th International Colloquium on Scanning Probe Microscopy (ICSPM24)
    • Place of Presentation
      Hawaii Honolulu
    • Year and Date
      2016-12-14
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] マイカ基板上にエピタキシャル成長したNi(111)の構造解析2016

    • Author(s)
      田中裕行, 谷口正輝
    • Organizer
      表面科学学術講演会
    • Place of Presentation
      名古屋市熱田区熱田西町
    • Year and Date
      2016-11-29
    • Related Report
      2016 Annual Research Report
  • [Presentation] STMに適したNi(111)基板の作成2016

    • Author(s)
      田中 裕行,谷口正輝
    • Organizer
      応用物理学会春季学術講演会
    • Place of Presentation
      東京都目黒区大岡山
    • Year and Date
      2016-03-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] Preparation of metal supported graphene substrate for STM2015

    • Author(s)
      Hiroyuki Tanaka and Masateru Taniguchi
    • Organizer
      2015 International Chemical Congress of Pacific Basin Societies
    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Preparation of Atomically Flat Pt(111) Surfaces2015

    • Author(s)
      Hiroyuki Tanaka and Masateru Taniguchi
    • Organizer
      23rd International Colloquium on Scanning Probe Microscopy (ICSPM23)
    • Place of Presentation
      北海道虻田郡ニセコ町
    • Year and Date
      2015-12-10
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] STMに適したPt(111)基板の作成2015

    • Author(s)
      田中裕行,谷口正輝
    • Organizer
      応用物理学会
    • Place of Presentation
      神奈川県・平塚市
    • Year and Date
      2015-03-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Pt(111)基板上のグラフェンの成膜2015

    • Author(s)
      田中裕行,谷口正輝
    • Organizer
      日本表面科学会
    • Place of Presentation
      北海道・札幌市
    • Year and Date
      2015-03-09
    • Related Report
      2014 Annual Research Report
  • [Presentation] Preparation of Atomically Flat Pt(111) Surfaces2014

    • Author(s)
      Hiroyuki Tanaka, M.Taniguchi
    • Organizer
      the 22nd International Colloquium on Scanning Probe Microscopy
    • Place of Presentation
      静岡県・賀茂郡
    • Year and Date
      2014-12-11
    • Related Report
      2014 Annual Research Report
    • Int'l Joint Research
  • [Presentation] DNAオリゴマー中のピリミジン塩基分子のdI/dV測定2014

    • Author(s)
      田中裕行,谷口正輝
    • Organizer
      応用物理学会
    • Place of Presentation
      北海道・札幌市
    • Year and Date
      2014-09-17
    • Related Report
      2014 Annual Research Report
  • [Presentation] STMに適したNi(111)及びグラフェン基板の作成2014

    • Author(s)
      田中裕行,谷口正輝
    • Organizer
      第61回応用物理学会春季学術講演会
    • Place of Presentation
      青山学院大学相模原キャンパス(神奈川県相模原市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] グラフェンに吸着したDNAのSTM/STS2013

    • Author(s)
      田中裕行
    • Organizer
      第74回応用物理学会秋季学術講演会
    • Place of Presentation
      同志社大学京田辺キャンパス(京都府京田辺市多々羅都谷1-3)
    • Related Report
      2013 Annual Research Report
  • [Presentation] グラフェン基板上の DNA 分子の SPM 観察2013

    • Author(s)
      田中裕行
    • Organizer
      第33回表面科学学術講演会
    • Place of Presentation
      つくば国際会議場 〒305-0032茨城県つくば市竹園2丁目 20-3
    • Related Report
      2013 Annual Research Report
  • [Remarks] Taniguchi Laboratory - ISIR - Osaka University

    • URL

      http://www.bionano.sanken.osaka-u.ac.jp

    • Related Report
      2017 Annual Research Report
  • [Remarks] 谷口研究室 - Osaka University

    • URL

      http://www.bionano.sanken.osaka-u.ac.jp/

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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