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Development of a gene-trap strategy for the transcriptionally silent genes of non-coding RNAs in the target cells

Research Project

Project/Area Number 25290034
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Laboratory animal science
Research InstitutionNara Institute of Science and Technology

Principal Investigator

Ishida Yasumasa  奈良先端科学技術大学院大学, バイオサイエンス研究科, 准教授 (10221756)

Project Period (FY) 2013-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2015: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2014: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2013: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Keywords遺伝子トラップ / UPATrap / 非コードRNA遺伝子 / ES細胞 / マウス / ES細胞 / 長鎖非コードRNA / NMD / リサーチバイオリソース / ジフテリア毒素 / ノックアウトマウス
Outline of Final Research Achievements

In order to inactivate, by insertional mutagenesis, all protein-coding genes in mouse undifferentiated embryonic-stem (ES) cells, the knockout mouse project (KOMP) had been carried out in the USA, Canada, UK, and Germany as a large-scale and international collaborative effort. In Japan, on the other hand, a gene-trapping strategy termed UPATrap, which we had originally developed, was further upgraded in the national bio-resource project (NBRP) of Monka-sho (MEXT). In the current research, we have tried to establish a novel methodology for the random disruption (trapping) of the transcriptionally silent genes of non-coding RNAs in the target cells.

Report

(5 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (3 results)

All 2016 2015

All Journal Article (1 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 1 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (2 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results)

  • [Journal Article] CIBZ Regulates Mesodermal and Cardiac Differentiation of by Suppressing T and Mesp1 Expression in Mouse Embryonic Stem Cells2016

    • Author(s)
      Kotoku T, Kosaka K, Nishio M, Ishida Y, Kawaichi M, Matsuda E
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 34188-34188

    • DOI

      10.1038/srep34188

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] PD-1とがん、そして自己と非自己の識別2016

    • Author(s)
      石田靖雅
    • Organizer
      第104回 日本肺癌学会関西支部学術集会
    • Place of Presentation
      薬業年金会館、大阪府大阪市
    • Year and Date
      2016-07-16
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Random insertional mutagenesis of transcriptionally silent genes in mouse embryonic stem cells.2015

    • Author(s)
      Atsushi Matsuba, Ryohei Kondo, Jie Bai, Kaito Tabata, Niluhputu Ika Mayasari, Phan Thi Thanh Huyen, Masashi Kawaichi, and Yasumasa Ishida
    • Organizer
      Conference on Transposition and Genome Engineering 2015
    • Place of Presentation
      奈良春日野国際フォーラム「IRAKA」(奈良県奈良市)
    • Year and Date
      2015-11-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research

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Published: 2013-05-21   Modified: 2019-07-29  

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