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Identification and clinical application of pathway-based markers for cancer

Research Project

Project/Area Number 25290070
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Medical genome science
Research InstitutionTokyo Medical and Dental University

Principal Investigator

Tanaka Hiroshi  東京医科歯科大学, 難治疾患研究所, 非常勤講師 (60155158)

Co-Investigator(Kenkyū-buntansha) Tanaka Shinji  東京医科歯科大学, 医歯学総合研究科分子腫瘍医学, 教授 (30253420)
Morioka Katuki  東京医科歯科大学, 難治疾患研究所, 助教 (30351589)
Mogushi Kaoru  順天堂大学大学院医学系研究科ゲノム, 再生医療センター, 助教 (60569292)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥17,420,000 (Direct Cost: ¥13,400,000、Indirect Cost: ¥4,020,000)
Fiscal Year 2015: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2014: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2013: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
Keywords上皮間葉転換 / がん転移 / 遺伝子発現プロファイル / Waddington地形 / ARACNe / がんパスウェイ / 肝細胞癌 / 遺伝子ネットワーク / バイオマーカー
Outline of Final Research Achievements

We conducted two studies。First, we collected a major molecular pathway for hepatocellular carcinoma (HCC) including 29 genes based on literature review, and network analyses were performed in combination with the gene expression profiles of HCC patients. Furthermore, we applied our network analysis method to the Gene Ontology (GO) terms to identify candidate subnetworks effective for the treatment of HCC. Second, we also conducted gene expression analysis of epithelial-mesenchymal transition (EMT) and measured the more intensive time point of EMT gene expression profile, to investigate the detailed process of cancer invasion and metastasis. Using non-negative matrix factorization (NMF), we identified four major component, namely, monotonic increase, monotonic decrease, early response, and intermediate state. Further analysis of master regulators in each component identify candidates for the development of anti-metastasis drugs.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (9 results)

All 2015 2014 2013 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results,  Acknowledgement Compliant: 1 results) Presentation (1 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Network biology approach to epithelial-mesenchymal transition in cancer metastasis: three stage theory.2015

    • Author(s)
      Tanaka H, Ogishima S.
    • Journal Title

      J Mol Cell Biol

      Volume: 7 Issue: 3 Pages: 253-66

    • DOI

      10.1093/jmcb/mjv035

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Age-related clinicopathological and molecular features of patients received curative hepatectomy for hepatocellular carcinoma.2014

    • Author(s)
      Katsuta E, Tanaka S, Mogushi K, Matsumura S, Ban D, Ochiai T, Irie T, Kudo A, Nakamura N, Tanaka H, Tanabe M, Arii S.
    • Journal Title

      American Journal of Surgery

      Volume: 208(3) Issue: 3 Pages: 450-456

    • DOI

      10.1016/j.amjsurg.2014.01.015

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Mitochondrial metabolism in the noncancerous liver determine the occurrence of hepatocellular carcinoma: a prospective study.2014

    • Author(s)
      Kudo A, Mogushi K, Takayama T, Matsumura S, Ban D, Irie T, Ochiai T, Nakamura N, Tanaka H, Anzai N, Sakamoto M, Tanaka S, Arii S.
    • Journal Title

      J Gastroenterol.

      Volume: 49 Issue: 3 Pages: 502-10

    • DOI

      10.1007/s00535-013-0791-4

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Contrast-enhanced intraoperative ultrasonography for vascular imaging of hepatocellular carcinoma; clinical and biological significance.2013

    • Author(s)
      Sato K
    • Journal Title

      Hepatology

      Volume: 57 Issue: 4 Pages: 1436-1447

    • DOI

      10.1002/hep.26122

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Visualization of stem cell features in human hepatocellular carcinoma enlightened in vivo significance of tumor-host interaction and clinical implication.2013

    • Author(s)
      Muramatsu S
    • Journal Title

      Hepatology

      Volume: 58 Issue: 1 Pages: 218-228

    • DOI

      10.1002/hep.26345

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] PathAct: a novel method for pathway analysis using gene expression profiles.2013

    • Author(s)
      Mogushi K, Tanaka H.
    • Journal Title

      Bioinformation

      Volume: 9 Pages: 394-400

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] A novel method for pathway analysis using gene expression profiles2013

    • Author(s)
      茂櫛薫、田中博
    • Organizer
      CBI学会2013年大会
    • Place of Presentation
      タワーホール船堀
    • Related Report
      2013 Annual Research Report
  • [Book] 生命進化のシステムバイオロジー2015

    • Author(s)
      田中 博
    • Total Pages
      224
    • Publisher
      日本評論社
    • Related Report
      2015 Annual Research Report
  • [Remarks] 東京医科歯科大学難治疾患研究所生命情報学ウェブサイト

    • URL

      http://bioinfo.tmd.ac.jp

    • Related Report
      2013 Annual Research Report

URL: 

Published: 2013-05-21   Modified: 2019-07-29  

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