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Dynamic regulation of chromatin by histone chaperone

Research Project

Project/Area Number 25291001
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Molecular biology
Research InstitutionUniversity of Tsukuba

Principal Investigator

Nagata Kyosuke  筑波大学, 学長 (40180492)

Co-Investigator(Kenkyū-buntansha) OKUWAKI Mitsuru  筑波大学, グローバル教育院, 准教授 (50322699)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000)
Fiscal Year 2015: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2014: ¥6,110,000 (Direct Cost: ¥4,700,000、Indirect Cost: ¥1,410,000)
Fiscal Year 2013: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
Keywords遺伝子 / ウイルス / ゲノム / 発生・分化 / クロマチン
Outline of Final Research Achievements

Aim of this study is to reveal the physiological function of histone chaperone TAF-I. TAF-I KO mice showed the embryonic lethality along with severe anemia and immature vascular remodeling until 12.5 day post conception. TAF-I KO ES cells showed the significant growth retardation and the delay of embryonic body formation mimicking the early embryo. From cell culture analyses, we found that TAF-I is involved in transcriptional regulation of interferon-stimulated genes through its histone H1 chaperone activity. From biochemical analyses, we revealed the regulatory mechanism of histone H1 chaperone activity of TAF-I through its intra-molecular binding. We also established the live cell imaging method of adenovirus genome in infected cells using TAF-I as a probe.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (50 results)

All 2016 2015 2014 2013 Other

All Journal Article (17 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 17 results,  Acknowledgement Compliant: 5 results,  Open Access: 3 results) Presentation (33 results)

  • [Journal Article] Imaging analysis of nuclear antiviral factors through direct detection of incoming adenovirus genome complexes2016

    • Author(s)
      T. Komatsu, H. Will, K. Nagata, H. Wodrich
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 473 Issue: 1 Pages: 200-205

    • DOI

      10.1016/j.bbrc.2016.03.078

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] An Adenovirus DNA Replication Factor, but Not Incoming Genome Complexes, Targets PML Nuclear Bodies2015

    • Author(s)
      Komatsu T, Nagata K, Wodrich H.
    • Journal Title

      Journal of Virology

      Volume: 90 Issue: 3 Pages: 1657-1667

    • DOI

      10.1128/jvi.02545-15

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] A Method for Visualization of Incoming Adenovirus Chromatin Complexes in Fixed and Living Cells2015

    • Author(s)
      Komatsu T, Dacheux D, Kreppel F, Nagata K, Wodrich H.
    • Journal Title

      PLoS One

      Volume: 10 Issue: 9 Pages: e0137102-e0137102

    • DOI

      10.1371/journal.pone.0137102

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Glucocorticoids facilitate the transcription from the human cytomegalovirus major immediate early promoter in glucocorticoid receptor- and nuclear factor-I-like protein-dependent manner.2015

    • Author(s)
      Inoue-Toyoda M, Kato K, Nagata K, Yoshikawa H.
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 476 Issue: 1 Pages: 9-14

    • DOI

      10.1016/j.bbrc.2015.01.091

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Silencing of IFN-stimulated gene transcription is regulated by histone H1 and its chaperone TAF-I2014

    • Author(s)
      Kadota S and Nagata K
    • Journal Title

      Nucleic Acids Res

      Volume: 42 Issue: 12 Pages: 7642-7653

    • DOI

      10.1093/nar/gku485

    • NAID

      120007136640

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Reconstitution of human rRNA gene transcription in mouse cells by complete SL1 complex.2014

    • Author(s)
      Murano K, Okuwaki M, Momose F, Kumakura M, Ueshima S, Newbold RF, Nagata K.
    • Journal Title

      J Cell Sci

      Volume: 127 Pages: 3309-3319

    • DOI

      10.1242/jcs.146787

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Long Noncoding RNA NEAT1-Dependent SFPQ Relocation from Promoter Region to Paraspeckle Mediates IL8 Expression upon Immune Stimuli2014

    • Author(s)
      Imamura K, Imamachi N, Akizuki G, Kumakura M, Kawaguchi A, Nagata K, Kato A, Kawaguchi Y, Sato H, Yoneda M, Kai C, Yada T, Suzuki Y, Yamada T, Ozawa T, Kaneki K, Inoue T, Kobayashi M, Kodama T, Wada Y, Sekimizu K and Akimitsu N.
    • Journal Title

      Molecular cell

      Volume: 53 Issue: 3 Pages: 393

    • DOI

      10.1016/j.molcel.2014.01.009

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Involvement of the N-terminal portion of influenza virus RNA polymerase subunit PB1 in nucleotide recognition.2014

    • Author(s)
      Binh NT, Wakai C, Kawaguchi A, Nagata K.
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 443 Issue: 3 Pages: 975-979

    • DOI

      10.1016/j.bbrc.2013.12.071

    • NAID

      120007130532

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Upstream binding factor-dependent and pre-rRNA transcription-independent association of pre-rRNA processing factors with rRNA gene.2014

    • Author(s)
      Ueshima, S., Nagata, K., and Okuwaki, M.
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 443 Issue: 1 Pages: 22-27

    • DOI

      10.1016/j.bbrc.2013.11.039

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Intrinsically disordered regions of nucleophosmin/B23 regulate its RNA binding activity through their inter- and intra-molecular association.2014

    • Author(s)
      Hisaoka, M., Nagata, K., and Okuwaki, M.
    • Journal Title

      Nucleic Acids Res.

      Volume: 42 Issue: 2 Pages: 1180-1195

    • DOI

      10.1093/nar/gkt897

    • NAID

      120007130533

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNA replication-dependent binding of CTCF plays a critical role in adenovirus genome functions.2013

    • Author(s)
      Komatsu T, Sekiya T, Nagata K.
    • Journal Title

      Scientific Report

      Volume: 3 Issue: 1 Pages: 2187-2187

    • DOI

      10.1038/srep02187

    • NAID

      120007136881

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The N-terminal region of influenza virus polymerase PB1 adjacent to the PA binding site is involved in replication but not transcription of the viral genome2013

    • Author(s)
      Binh NT, Wakai C, Kawaguchi A, Nagata K
    • Journal Title

      Front. Microbiol

      Volume: 4 Pages: 398-398

    • DOI

      10.3389/fmicb.2013.00398

    • NAID

      120007130538

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Anti-influenza virus activity of Ginkgo biloba leaf extracts.2013

    • Author(s)
      Haruyama T, Nagata K.
    • Journal Title

      Journal of Natural Medicine

      Volume: 67(3) Issue: 3 Pages: 636-642

    • DOI

      10.1007/s11418-012-0725-0

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of a novel and unique transcription factor in the intraerythrocytic stage of Plasmodium falciparum.2013

    • Author(s)
      Komaki-Yasuda, K., Okuwaki, M., Nagata, K., Kawazu, S., and Kano, S.
    • Journal Title

      PLoS One.

      Volume: 8 Issue: 9 Pages: e74701-e74701

    • DOI

      10.1371/journal.pone.0074701

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Antagonistic activities of the immunomodulator and PP2A-activating drug FTY720 (Fingolimod, Gilenya) in Jak2-driven hematologic malignancies.2013

    • Author(s)
      Oaks JJ, Santhanam R, Walker CJ, Roof S, Harb JG, Ferenchak G, Eisfeld AK, Van Brocklyn JR, Briesewitz R, Saddoughi SA, Nagata K, Bittman R, Caligiuri MA, Abdel-Wahab O, Levine R, Arlinghaus RB, Quintas-Cardama A, Goldman JM, Apperley J, Reid A, Milojkovic D, Ziolo MT, Marcucci G, Ogretmen B, Neviani P, Perrotti D.
    • Journal Title

      Blood

      Volume: 122(11) Issue: 11 Pages: 1923-1934

    • DOI

      10.1182/blood-2013-03-492181

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary crystallographic analysis of an Escherichia coli-selected mutant of the nuclease domain of the metallonuclease colicin E7.2013

    • Author(s)
      10) Czene A, Tóth E, Gyurcsik B, Otten H, Poulsen JC, Lo Leggio L, Larsen S, Christensen HE, Nagata K.
    • Journal Title

      Acta Crystallography Section F Structural Biology and Crystalization Communications

      Volume: 69 Issue: 5 Pages: 551-554

    • DOI

      10.1107/s1744309113008233

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The role of the N-terminal loop in the function of the colicin E7 nuclease domain2013

    • Author(s)
      Czene A, Németh E, Zóka IG, Jakab-Simon NI, Körtvélyesi T, Nagata K, Christensen HE, Gyurcsik B
    • Journal Title

      J. Biol. Inorg. Chem

      Volume: 18 Issue: 3 Pages: 309-321

    • DOI

      10.1007/s00775-013-0975-7

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] ヒストンH1シャペロンTAF-Iの分子内相互作用による活性制御機構2015

    • Author(s)
      鍛谷香織、加藤広介、永田恭介
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場(神戸)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] M期におけるCTCFのDNA結合領域2014

    • Author(s)
      関屋健史、村野健作、永田恭介
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] ヒト細胞内におけるマウスrRNA遺伝子転写の再構成2014

    • Author(s)
      村野健作、永田恭介
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Aberrant nuclear-cytoplasmic transport by nup214-fusion gene products found in leukemia2014

    • Author(s)
      Saito Shoko, Cigdem Sadik, Kyosuke Nagata
    • Organizer
      Cold Spring Harbor Laboratory meeting, 2014 Nuclear Organization and Function
    • Place of Presentation
      ニューヨーク
    • Year and Date
      2014-08-19 – 2014-08-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] ヒストンシャペロンnucleophosmin/NPM1/B23のRNA結合制御機構2014

    • Author(s)
      久岡美晴、永田恭介、奥脇 暢
    • Organizer
      平成26年度日本生化学会関東支部例会 ~タンパク質の機能~
    • Place of Presentation
      水戸
    • Year and Date
      2014-06-14
    • Related Report
      2014 Annual Research Report
  • [Presentation] リンカーヒストンH1シャペロンTAF-IによるIFN誘導性遺伝子の転写抑制制御機構2014

    • Author(s)
      門田伸一、永田恭介
    • Organizer
      冬の若手ワークショップ2014
    • Place of Presentation
      舌切りの宿 雀磯部ガーデン(群馬県安中市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Involvement of histone H1 ubiquitination in post-replicative chromatin maintenance2014

    • Author(s)
      Kato K, Nagata K
    • Organizer
      The 13th Asian Conference on Transcription
    • Place of Presentation
      メルボルン大学(メルボルン市・オーストラリア)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Overcoming the species-specific barrier in the rRNA gene transcription by reconstitution of complete SL1 complex2014

    • Author(s)
      Murano K, Nagata K
    • Organizer
      The 13th Asian Conference on Transcription
    • Place of Presentation
      メルボルン大学(メルボルン市・オーストラリア)
    • Related Report
      2013 Annual Research Report
  • [Presentation] インフルエンザウイルスゲノムの機能発現機構と創薬展開2013

    • Author(s)
      永田恭介
    • Organizer
      第66回日本細菌学会九州支部総会・第50回日本ウイルス学会九州支部総会
    • Place of Presentation
      長崎市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Host factor-dependent RNA replication of the influenza virus genome2013

    • Author(s)
      永田恭介
    • Organizer
      The 12th Awaji International Forum on Infection and Immunity
    • Place of Presentation
      淡路夢舞台国際会議場(兵庫県淡路市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Tamiflu resistant cell-to-cell transmission of cell associated influenza virus2013

    • Author(s)
      森幸太郎、春山貴弘、永田恭介
    • Organizer
      The 12th Awaji International Forum on Infection and Immunity
    • Place of Presentation
      淡路夢舞台国際会議場(兵庫県淡路市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Fine tuning of the allosteric activation in the nuclease domain of colicin E72013

    • Author(s)
      Bela Gyurcsik, Eszter Németh, Peter W. Thulstrup, Milan Kožīšek, Hans E.M. Christensen, Kyosuke Nagata
    • Organizer
      Leading Graduate Schools International Conference (Tsukuba Global Science Week)
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] TAF-I regulates the transcription of interferon-stimulated genes through its histone chaperone activity2013

    • Author(s)
      Kadota S, Nagata K
    • Organizer
      Leading Graduate Schools International Conference (Tsukuba Global Science Week)
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Functions of RNA polymerase I transcription factor UBF in nucleolar formation2013

    • Author(s)
      Ueshima S, Nagata K, Okuwaki M
    • Organizer
      Leading Graduate Schools International Conference (Tsukuba Global Science Week)
    • Place of Presentation
      国際会議場(茨城県つくば市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNA-binding Activity of CTCF, an Insulator Protein Regulated by Phosphorylation in Mitosis2013

    • Author(s)
      Sekiya T, Murano K, Nagata K
    • Organizer
      Leading Graduate Schools International Conference (Tsukuba Global Science Week)
    • Place of Presentation
      国際会議場(茨城県つくば市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] EZH2, component of polycomb complex, regulates nuclear export of the influenza virus M1 and the viral genome2013

    • Author(s)
      Asaka MN, Kawaguchi A, Nagata K
    • Organizer
      Leading Graduate Schools International Conference (Tsukuba Global Science Week)
    • Place of Presentation
      国際会議場(茨城県つくば市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] In cellulo analysis of parvovirus-mediated changes of nuclear envelope integrity by real time microscopy2013

    • Author(s)
      Kenza Snoussi, Kawaguchi A, Kato K, Harald Wodrich, Nagata K, Michael Kann
    • Organizer
      Leading Graduate Schools International Conference (Tsukuba Global Science Week)
    • Place of Presentation
      国際会議場(茨城県つくば市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] インフルエンザポリメラーゼ遺伝子間の適合性2013

    • Author(s)
      原田芳美、川口敦史、永田恭介
    • Organizer
      第61回日本ウイルス学会学術集会
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] インフルエンザウイルスゲノムの細胞内輸送機構におけるNS1の新規機能2013

    • Author(s)
      長利卓、川口敦史、永田恭介
    • Organizer
      第61回日本ウイルス学会学術集会
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] インフルエンザウイルス増殖にかかわる細胞骨格関連因子2013

    • Author(s)
      熊倉充子、永田恭介
    • Organizer
      第61回日本ウイルス学会学術集会
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] インフルエンザウイルスにおけるNA非依存的cell-to-cell感染機構2013

    • Author(s)
      森幸太郎、春山貴弘、永田恭介
    • Organizer
      第61回日本ウイルス学会学術集会
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] インフルエンザウイルス感染に応答した宿主因子YB-1による中心体の機能制御2013

    • Author(s)
      川口敦史、永田恭介
    • Organizer
      第61回日本ウイルス学会学術集会
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ユビキチン化によるヒストンH1の機能制御2013

    • Author(s)
      加藤広介、永田恭介
    • Organizer
      第31回染色体ワークショップ・第12回核ダイナミクス研究会
    • Place of Presentation
      ホテルおかだ(神奈川県箱根町)
    • Related Report
      2013 Annual Research Report
  • [Presentation] TAF-Iによるヒストンシャペロン活性を介したインターフェロン誘導性遺伝子転写制御2013

    • Author(s)
      門田伸一、永田恭介
    • Organizer
      第31回染色体ワークショップ・第12回核ダイナミクス研究会
    • Place of Presentation
      ホテルおかだ(神奈川県箱根町)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 核小体構造維持におけるNucleophosmin/B23の機能2013

    • Author(s)
      奥脇暢
    • Organizer
      第31回染色体ワークショップ・第12回核ダイナミクス研究会
    • Place of Presentation
      ホテルおかだ(神奈川県箱根町)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ポリコーム複合体因子であるEZH2はインフルエンザウイルスタンパク質M1およびインフルエンザウイルスゲノムの核外輸送を制御する2013

    • Author(s)
      浅賀正充、川口敦史、永田恭介
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市
    • Related Report
      2013 Annual Research Report
  • [Presentation] M期リン酸化によるCTCFのDNA結合活性制御の解析2013

    • Author(s)
      関屋健史、村野健作、永田恭介
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヒストンシャペロンによるリンカーンヒストンH1バリアントの機能制御機構2013

    • Author(s)
      阿部真弓、久岡美晴、永田恭介
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市
    • Related Report
      2013 Annual Research Report
  • [Presentation] rRNA遺伝子の種特異的転写機構の解析2013

    • Author(s)
      村野健作、永田恭介
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Analysis of RNAi-mediated heterochromatinization during meiosis in C. elegans2013

    • Author(s)
      Tabara H, Mitani S, Nagata K
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Effect of nucleoporin-related fusion proteins found in leukemia on NF-κB pathway

    • Author(s)
      Cigdem Sadik、 齋藤祥子、 永田恭介
    • Organizer
      平成25年度日本生化学会関東支部例会
    • Place of Presentation
      山梨大(山梨県甲府市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ウイルスポリメラーゼによって規定されるトリインフルエンザウイルスの哺乳類細胞への適応機構

    • Author(s)
      原田芳美、 川口敦史、 永田恭介
    • Organizer
      平成25年度日本生化学会関東支部例会
    • Place of Presentation
      山梨大(山梨県甲府市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] インフルエンザウイルスゲノムの複製機構に基盤をおいた創薬

    • Author(s)
      永田恭介
    • Organizer
      第42回ヒューマンサイエンス総合研究セミナー
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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