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Studies of nascent chains that monitors protein localization machineries

Research Project

Project/Area Number 25291006
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Molecular biology
Research InstitutionKyoto Sangyo University

Principal Investigator

CHIBA Shinobu  京都産業大学, 総合生命科学部, 准教授 (20523517)

Co-Investigator(Renkei-kenkyūsha) ITO Koreaki  京都産業大学, 研究機構, シニアリサーチフェロー (90027334)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥9,750,000 (Direct Cost: ¥7,500,000、Indirect Cost: ¥2,250,000)
Fiscal Year 2015: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Fiscal Year 2014: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Fiscal Year 2013: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Keywords翻訳アレスト / 翻訳途上鎖 / タンパク質局在化 / 翻訳制御 / タンパク質膜組込 / 蛋白質膜組込
Outline of Final Research Achievements

To understand the molecular mechanisms of how regulatory arrest peptides, such as Bacillus subtilis MifM or Escherichia coli SecM could regulate their own translation elongation, we studied interactions between nascent polypeptides and the ribosomes. Our genetic, biochemical or structural studies revealed several detail features of interactions between nascent chain and the ribosome in the exit tunnel as well as near the active center of the ribosome. We also studied YidC, a membrane protein insertase that is required for releasing elongation arrest of MifM, and found several biochemical properties of the YidC that are important for its functions.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (22 results)

All 2016 2015 2014 2013 Other

All Int'l Joint Research (1 results) Journal Article (7 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 7 results,  Open Access: 3 results,  Acknowledgement Compliant: 5 results) Presentation (13 results) (of which Int'l Joint Research: 3 results,  Invited: 4 results) Remarks (1 results)

  • [Int'l Joint Research] ミュンヘン大学(ドイツ)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Integrated in vivo and in vitro nascent chain profiling reveals widespread translational pausing.2016

    • Author(s)
      Chadani Y, Niwa T, Chiba S, Taguchi, H., Ito K.
    • Journal Title

      Proc Natl Acad Sci USA.

      Volume: 113 Issue: 7

    • DOI

      10.1073/pnas.1520560113

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Hydrophilic microenvironment required for the channel-independent insertase function of YidC protein.2015

    • Author(s)
      Shimokawa-Chiba, N., Kumazaki, K., Tsukazaki, T., Nureki, O., Ito, K. and Chiba, S.
    • Journal Title

      Proc. Natl. Acad. Sci. USA.

      Volume: 112 Issue: 16 Pages: 5063-5068

    • DOI

      10.1073/pnas.1423817112

    • NAID

      120005716850

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Structure of the Bacillus subtilis 70S ribosome reveals the basis for species-specific stalling.2015

    • Author(s)
      Sohmen, D., Chiba, S., Shimokawa-Chiba, N., Innis, A., Berninghausen, O., Beckmann, R., Ito, K. and Wilson, D.
    • Journal Title

      Nat. Commun.

      Volume: 6 Issue: 1 Pages: 6941-6941

    • DOI

      10.1038/ncomms7941

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Nascent chain-monitored remodeling of the Sec machinery for salinity adaptation of marine bacteria2015

    • Author(s)
      Ishii, E., Chiba, S., Hashimoto, N., Kojima, S., Homma, M., Ito, K., Akiyama, Y. and Mori, H.
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 112 Issue: 40

    • DOI

      10.1073/pnas.1513001112

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] MifM monitors total YidC activities of Bacillus subtilis including that of YidC2, the target of regulation.2015

    • Author(s)
      Chiba, S. and Ito, K
    • Journal Title

      J Bacteriol

      Volume: 197 Issue: 1 Pages: 99-107

    • DOI

      10.1128/jb.02074-14

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Identification of a SecM segment required for export-coupled release from elongation arrest.2014

    • Author(s)
      Nakamori, K., Chiba, S. and Ito, K.
    • Journal Title

      FEBS Letter

      Volume: 588 Pages: 3098-3103

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Arrest peptides: cis-acting modulators of translation.2013

    • Author(s)
      伊藤維昭、千葉志信
    • Journal Title

      Annu. Rev. Biochem.

      Volume: 82 Issue: 1 Pages: 171-202

    • DOI

      10.1146/annurev-biochem-080211-105026

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] Use of Bacillus subtilis MifM to dissect the YidC functions to facilitate membrane protein insertion2016

    • Author(s)
      Shinobu Chiba, Naomi Shimokawa-Chiba, Koreaki, Ito
    • Organizer
      Gordon Research Conference
    • Place of Presentation
      Galveston, TX, USA
    • Year and Date
      2016-03-06
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Nascent chain-mediated monitoring of a protein localization machinery2016

    • Author(s)
      千葉志信
    • Organizer
      第18回Tokyo RNA Club
    • Place of Presentation
      東京大学
    • Year and Date
      2016-01-14
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Nascent chain-mediated monitoring of the membrane protein biogenesis pathway2015

    • Author(s)
      千葉志信
    • Organizer
      Nascent Chain Biology Meeting 2015 in Tokyo
    • Place of Presentation
      東京大学
    • Year and Date
      2015-10-01
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 枯草菌MifM翻訳途上鎖とリボソームとの相互作用様式の解明2015

    • Author(s)
      千葉志信、Daniel Sohmen、千葉(下川)直美、伊藤維昭、Daniel Wilson
    • Organizer
      2015年度グラム陽性菌ゲノム機能会議
    • Place of Presentation
      滋賀県大津市
    • Year and Date
      2015-08-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] YidCによるタンパク質膜組込機構の解明2014

    • Author(s)
      千葉志信、熊崎薫、塚崎智也、濡木理、伊藤維昭
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] YidCによるチャネルに依存しない蛋白質膜組込機構2014

    • Author(s)
      千葉志信、熊崎薫、塚崎智也、濡木理、伊藤維昭
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      京都
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] チャネルに依存しない蛋白質膜組込機構:アレスト因子MifMを利用したYidCの機能解析2014

    • Author(s)
      千葉志信、熊崎薫、塚崎智也、濡木理、伊藤維昭
    • Organizer
      2014年度グラム陽性菌ゲノム機能会議
    • Place of Presentation
      鶴岡
    • Year and Date
      2014-09-14 – 2014-09-15
    • Related Report
      2014 Annual Research Report
  • [Presentation] 働く新生鎖MifMを利用した蛋白質膜組込装置YidCの機能解析2014

    • Author(s)
      千葉志信、熊崎薫、塚崎智也、濡木理、伊藤維昭
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] YidCによるタンパク質膜組込機構2014

    • Author(s)
      千葉志信、熊崎薫、塚崎智也、濡木理、伊藤維昭
    • Organizer
      第61回生化学会近畿支部例会
    • Place of Presentation
      京都
    • Year and Date
      2014-05-17
    • Related Report
      2014 Annual Research Report
  • [Presentation] 枯草菌MifM によるユニークな翻訳アレストと 蛋白質膜組込因子の制御.2013

    • Author(s)
      千葉志信、伊藤維昭
    • Organizer
      第10 回 21 世紀大腸菌研究会
    • Place of Presentation
      静岡県修善寺
    • Related Report
      2013 Annual Research Report
  • [Presentation] MifM induces multisite ribosome stalling in monitoring membrane protein biogenesis.2013

    • Author(s)
      千葉志信、伊藤維昭
    • Organizer
      Ribosomes Conference
    • Place of Presentation
      Napa Valley, California, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] 翻訳アレストを介した枯草菌MifM による蛋白 質膜組込因子YidC の制御.2013

    • Author(s)
      千葉志信、伊藤維昭
    • Organizer
      グラム陽性菌ゲノム機能会議
    • Place of Presentation
      筑波
    • Related Report
      2013 Annual Research Report
  • [Presentation] 枯草菌MifM は、ユニークな翻訳アレストを介 して蛋白質膜組込因子の発現量を調節する.2013

    • Author(s)
      千葉志信、伊藤維昭
    • Organizer
      第7 回細菌学若手 コロッセウム
    • Place of Presentation
      広島市
    • Related Report
      2013 Annual Research Report
  • [Remarks] 千葉研究室HP

    • URL

      http://www.cc.kyoto-su.ac.jp/~k4563/index-j.html

    • Related Report
      2015 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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