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Structural studies of nucleic acid sensing Toll-like receptors

Research Project

Project/Area Number 25291010
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionThe University of Tokyo

Principal Investigator

Shimizu Toshiyuki  東京大学, 薬学研究科(研究院), 教授 (30273858)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000)
Fiscal Year 2015: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2014: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2013: ¥7,670,000 (Direct Cost: ¥5,900,000、Indirect Cost: ¥1,770,000)
KeywordsToll様受容体 / 自然免疫 / X線結晶解析 / 一本鎖核酸 / 1本鎖核酸 / X線結晶構造解析 / X線結晶構造解析
Outline of Final Research Achievements

Innate immunity serves as the first line of defense against invading pathogens such as bacteria and viruses. Toll-like receptors (TLRs) are examples of innate immune receptors, which sense specific molecular patterns from pathogens and activate immune responses.
TLR8 recognizes single stranded (ss) RNA derived from bacterial and viral DNA. We solved the crystal structure of TLR8 in complex with ssRNA and revealed that TLR8 is a uridine senso. TLR8 can be synergistically activated by uridine and oligonucleotide degraded from ssRNATLR9 recognizes bacterial and viral DNA containing the Cytosine-phosphate-Guanine (CpG) dideoxynucleotide motif. Here we show the crystal structure of TLR9 bound to agonistic CpG-DNA, forming a symmetric TLR9/CpG-DNA complex with 2:2 stoichiometry. CpG-DNA was recognized by both protomers in the dimer, in particular by the N-terminal fragment (LRRNT-LRR10) from one protomer and the C-terminal fragment (LRR20-LRR22) from the other.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (17 results)

All 2015 2014 2013 Other

All Int'l Joint Research (1 results) Journal Article (9 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 9 results,  Acknowledgement Compliant: 5 results,  Open Access: 2 results) Presentation (6 results) (of which Int'l Joint Research: 1 results,  Invited: 2 results) Remarks (1 results)

  • [Int'l Joint Research] University of Minnesota(米国)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9.2015

    • Author(s)
      Ohto, U., Shibata, T., Tanji, H., Krayukhina, E., Uchiyama, S., Miyake, K., and Shimizu, T.
    • Journal Title

      Nature

      Volume: 520 Issue: 7549 Pages: 702-705

    • DOI

      10.1038/nature14138

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] DNase II-dependent DNA digestion is required for DNA sensing by TLR92015

    • Author(s)
      Chan MP, Onji M, Fukui R, Kawane K, Shibata T, Saitoh SI, Ohto U, Shimizu T, Barber GN, *Miyake K
    • Journal Title

      Nat Commun

      Volume: 6 Issue: 1 Pages: 5853-5853

    • DOI

      10.1038/ncomms6853

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Targeting cell surface TLR7 for therapeutic intervention in autoimmune diseases2015

    • Author(s)
      Kanno A, Tanimura N, Ishizaki M, Ohko K, Motoi Y, Onji M, Fukui R, Shimozato T, Yamamoto K, Shibata T, Sano S, Sugahara-Tobinai A, Takai T, Ohto U, Shimizu T, Saitoh S, Miyake K.
    • Journal Title

      Nature Communications

      Volume: 6 Issue: 1 Pages: 6119-6119

    • DOI

      10.1038/ncomms7119

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structure-based Design of Human TLR8-specific Agonists with Augmented Potency and Adjuvanticity.2015

    • Author(s)
      Beesu, M., Caruso, G., Salyer, A., Khetani, K., Sil, D., Weerasinghe, M., Tanji, H., Ohto, U., Shimizu, T., & David, S. A.
    • Journal Title

      J. Med. Chem.

      Volume: 58 Issue: 19 Pages: 7833-7849

    • DOI

      10.1021/acs.jmedchem.5b01087

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Toll-like receptor 8 senses degradation products of single-stranded RNA.2015

    • Author(s)
      Tanji H, Ohto U, Shibata T, Taoka M, Yamauchi Y, Isobe T, Miyake K,
    • Journal Title

      Nat Struct Mol Biol.

      Volume: 22 Issue: 2 Pages: 109-115

    • DOI

      10.1038/nsmb.2943

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Determinants of activity at human Toll-like receptors 7 and 8: quantitative structure-activity2014

    • Author(s)
      Yoo E, Salunke DB, Sil D, Guo X, Salyer AC, Hermanson AR, Kumar M,
    • Journal Title

      J Med Chem.

      Volume: 57 Issue: 19 Pages: 7955-7970

    • DOI

      10.1021/jm500744f

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Structure and function of toll-like receptor 8.2014

    • Author(s)
      Ohto, U., Tanji, H., & Shimizu, T.
    • Journal Title

      Microbes Infect.

      Volume: 16 Issue: 4 Pages: 273-282

    • DOI

      10.1016/j.micinf.2014.01.007

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural reorganization of the Toll-like receptor 8 dimer induced by agonistic ligands2013

    • Author(s)
      Tanji H, Ohto U, Shibata T, Miyake K, Shimizu T
    • Journal Title

      Science

      Volume: 339 Issue: 6126 Pages: 1426-1429

    • DOI

      10.1126/science.1229159

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Human TLR4 polymorphism D299G/T399I alters TLR4/MD-2 conformation and response to a weak ligand monophosphoryl lipid A2013

    • Author(s)
      N. Yamakawa, U. Ohto, S. Akashi-Takamura, K. Takahashi, SI. Saitoh, N. Tanimura, T. Suganami, Y. Ogawa, T. Shibata, T. Shimizu, K. Miyake
    • Journal Title

      Int. Immunol.

      Volume: 25 Issue: 1 Pages: 45-52

    • DOI

      10.1093/intimm/dxs084

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] Structural studies of single-stranded RNA receptor TLR82015

    • Author(s)
      Hiromi Tanji, Umeharu Ohto, Takuma Shibata, Kensuke Miyake, Toshiyuki Shimizu
    • Organizer
      Toll meeting 2015
    • Place of Presentation
      Palacio de Congresos de Mabella(SPAIN)
    • Year and Date
      2015-10-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 自然免疫系一本鎖RNA受容体TLR8の構造基盤2015

    • Author(s)
      丹治裕美、大戸梅治、柴田琢磨、田岡万悟、山内芳雄、礒邉俊明、三宅健介、清水敏之
    • Organizer
      第15回日本蛋白質科学会年会
    • Place of Presentation
      あわぎんホール(徳島県徳島市)
    • Year and Date
      2015-06-25
    • Related Report
      2015 Annual Research Report
  • [Presentation] Structural study of TLR8 sensing single stranded RNA in innate immune system2014

    • Author(s)
      Shimizu T
    • Organizer
      The Cold Spring Harbor Asia conference
    • Place of Presentation
      Suzhou Dushu Lake Conference Center, Suzhou, China
    • Year and Date
      2014-10-27 – 2014-10-31
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Structural study of TLR8 sensing single stranded RNA in innate immune system2014

    • Author(s)
      Shimizu T
    • Organizer
      The 4th Asia Pacific Protein Association (APPA) Conference
    • Place of Presentation
      Jeju, Korea
    • Year and Date
      2014-05-17 – 2014-05-20
    • Related Report
      2014 Annual Research Report
  • [Presentation] Toll 様受容体 8(TLR8)の構造科学的研究2013

    • Author(s)
      清水敏之
    • Organizer
      日本生化学大会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Structural study of innate immune receptor, TLR

    • Author(s)
      Shimizu T
    • Organizer
      FAOBMB Mini-Symposium 2013
    • Place of Presentation
      岩手医科大学(岩手県)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Remarks] 蛋白構造生物学教室

    • URL

      http://www.f.u-tokyo.ac.jp/~kouzou/

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report

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Published: 2013-05-21   Modified: 2022-01-27  

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