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Molecular and Structural Basis of Nitrogen Removal by Anammox Bacteria

Research Project

Project/Area Number 25291015
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionTottori University

Principal Investigator

Nagano Shingo  鳥取大学, 工学(系)研究科(研究院), 教授 (60286440)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000)
Fiscal Year 2015: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2014: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2013: ¥7,670,000 (Direct Cost: ¥5,900,000、Indirect Cost: ¥1,770,000)
Keywordsアナモックス / ヘム / 脱窒 / 水質浄化 / 窒素循環 / X線結晶構造解析 / 蛋白質 / 結晶構造
Outline of Final Research Achievements

Anammox bacteria produce dinitorgen from nitrite and ammonium under anaerobic condition. The key enzyme of nitorogen metabolism of anammox is hydrazine synthase, which produces hydrazine from nitric oxide and anmmonium. In this study, we have prepared 10-L scale membrane bioreactor for cultivation of anammox bacteria. Large amount of HZS was extracted from anammox bacteria and highly purified HZS are obtained by anion exchange and hydroxyapatite chromatography. We have also cloned HZS gene (hzsABC) from anammox bacteria genome and constructed monocistronic and polycistronic expression vector of HZS. Although some of HZS A subunit lost heme c, we have confirmed expression of HZS in E. coli.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (23 results)

All 2016 2015 2014 2013

All Journal Article (3 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 2 results,  Open Access: 1 results) Presentation (19 results) (of which Int'l Joint Research: 3 results,  Invited: 6 results) Book (1 results)

  • [Journal Article] Crystal structure of D-stereospecific amidohydrolase from Streptomyces sp. 82F2: insight into the structural factors for substrate specificity.2016

    • Author(s)
      Arima J, Shimone K, Miyatani K, Tsunehara Y, Isoda Y, Hino T, Nagano S
    • Journal Title

      FEBS Journal

      Volume: 283 Issue: 2 Pages: 337-349

    • DOI

      10.1111/febs.13579

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Structure-function analyses of cytochrome P450revI involved in reveromycin A biosynthesis and evaluation of the biological activity of its substrate, reveromycin T2014

    • Author(s)
      Shunji Takahashi, Shingo Nagano, Toshihiko Nogawa, Naoki Kanoh, Masakazu Uramoto, Makoto Kawatani, Yoshitsugu Shiro, Hiroyuki Osada
    • Journal Title

      Journal of Biological Chemistry

      Volume: 289 Issue: 47 Pages: 32446-32458

    • DOI

      10.1074/jbc.m114.598391

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] ビスインドールアルカロイドの分子骨格構築に見いだされる有機化学のロジック2014

    • Author(s)
      永野真吾
    • Journal Title

      化学工業

      Volume: 65 Pages: 48-55

    • Related Report
      2013 Annual Research Report
  • [Presentation] Crystal structures of CYP90B1: Implications for brassinosteroids Biosynthesis2016

    • Author(s)
      Shingo Nagano
    • Organizer
      23rd International Conference on Isoprenoids
    • Place of Presentation
      ミンスク ベラルーシ
    • Year and Date
      2016-09-04
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Crystal structures of CYP90B1, which is involved in plant steroid hormone2016

    • Author(s)
      Shingo Nagano
    • Organizer
      International Conference on Porphyrin and Phthalocyanines 9
    • Place of Presentation
      南京 中国
    • Year and Date
      2016-07-03
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 好熱性アナモックス菌由来ヒドラジン合成酵素の大腸菌を用いた発現系の構築2015

    • Author(s)
      〇蜂谷将吾、岡本義明、西本一希、福間三喜、日野智也、永野真吾
    • Organizer
      BMB2015
    • Place of Presentation
      神戸市・ポートアイランド
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] 好熱性アナモックス菌由来のラダラン脂質生合成推定鍵酵素の発現系の構築2015

    • Author(s)
      〇新出のぞみ、島田順平、永野真吾、福間三喜、日野智也
    • Organizer
      BMB2015
    • Place of Presentation
      神戸市・ポートアイランド
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] アナモックス細菌のラダラン脂質を生合成する推定鍵酵素の発現、精製条件の検討2015

    • Author(s)
      〇島田順平、新出のぞみ、福間三喜、日野智也、永野真吾
    • Organizer
      BMB2015
    • Place of Presentation
      神戸市・ポートアイランド
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] 植物ホルモン「ジャスモン酸」の代謝に関わる水酸化酵素CYP94C1の発現および精製2015

    • Author(s)
      〇久後翔平、日野智也、水谷正治、永野真吾
    • Organizer
      BMB2015
    • Place of Presentation
      神戸市・ポートアイランド
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] 嫌気的にアンモニアを酸化するアナモックス菌の集積培養とアナモックス菌による窒素代謝の鍵酵素「ヒドラジン合成酵素」の精製2015

    • Author(s)
      〇岡本義明、蜂谷将吾、西本一希、福間三喜、日野智也、永野真吾
    • Organizer
      BMB2015
    • Place of Presentation
      神戸市・ポートアイランド
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] 〇藤山敬介、日野智也、水谷正治、永野真吾2015

    • Author(s)
      ブラシノステロイド生合成における鍵酵素CYP90B1の基質結合型の構造決定にむけた欠損変異体の作製
    • Organizer
      BMB2015
    • Place of Presentation
      神戸市・ポートアイランド
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] アナモックス菌による窒素代謝の鍵酵素HZSのポリシストロン性発現系の構築2015

    • Author(s)
      〇西本一希、蜂谷将吾、福間三喜、日野智也、永野真吾
    • Organizer
      第15回 日本蛋白質科学会年会
    • Place of Presentation
      徳島市・あわぎんホール
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] Crystal structure of CYP90B1, which is involved in brassinosteroid biosynthesis2015

    • Author(s)
      Shingo Nagano
    • Organizer
      19th International Conference on Cytochrome P450
    • Place of Presentation
      東京
    • Year and Date
      2015-06-12
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ブラシノステロイド生合成の律速酵素CYP90B1の阻害剤結合型結晶構造2015

    • Author(s)
      金谷雅弘、日野智也、水谷正治、〇永野真吾
    • Organizer
      第56回 日本生化学会 中国・四国支部例会
    • Place of Presentation
      松江市・島根大学
    • Year and Date
      2015-05-29
    • Related Report
      2015 Annual Research Report
  • [Presentation] 植物ホルモン「ブラシノステロイド」生合成の律速酵素CYP90B1の結晶構造解析2015

    • Author(s)
      金谷雅弘、日野智也、水谷正治、〇永野真吾
    • Organizer
      日本生物物理学会第7回中国四国支部大会
    • Place of Presentation
      徳島市・徳島大学
    • Year and Date
      2015-05-29
    • Related Report
      2015 Annual Research Report
  • [Presentation] クマリン化合物生合成鍵酵素の結晶構造解析による基質選択性の解明2014

    • Author(s)
      山口みなみ、周藤聡美、水谷正治、清水文一、日野智也、永野真吾
    • Organizer
      平成26年度日本結晶学会年会
    • Place of Presentation
      東京都文京区
    • Year and Date
      2014-11-01 – 2014-11-03
    • Related Report
      2014 Annual Research Report
  • [Presentation] 植物ホルモン「ブラシノステロイド」生合成に関与するヘム酵素CYP90B1のX線結晶構造解析に向けた精製及び結晶化2014

    • Author(s)
      金谷雅弘、水谷正治、日野智也、永野真吾
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      京都府京都市
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] インドールアルカロイド生合成酵素群の結晶構造から明らかとなった巧みな生合成戦略2014

    • Author(s)
      永野真吾
    • Organizer
      第27回生物無機化学夏季セミナー
    • Place of Presentation
      兵庫県姫路市
    • Year and Date
      2014-08-29 – 2014-08-30
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Crystal structure of uniconazole-bound CYP90B1, which is involved in brassinosteroid biosynthesis2014

    • Author(s)
      Kanadani Masahiro, Tomoya Hino, Masaharu Mizutani, Shingo Nagano
    • Organizer
      12th International symposium of cytochrome P450 biodiversity and biotechnology
    • Place of Presentation
      京都府京都市
    • Year and Date
      2014-07-24 – 2014-07-28
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] フラビン酵素RebC変異体の結晶構造解析とインドロカルバゾール骨格の構造多様性創出原理の解明2013

    • Author(s)
      板谷 颯、出雲栄悠、景山沙貴、黒住彩佳、尾仲宏康、浅水俊平、日野智也、永野真吾
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      とりぎん文化会館(鳥取市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 仮性結核菌由来ヘム獲得蛋白質HasAの結晶構造解析による新規ヘム結合様式の解明2013

    • Author(s)
      金谷雅弘, 室木俊毅, 石丸幸絵, 和田百希, 佐藤豪洋, 小崎 伸一, 日野 智也, 永野真吾
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      とりぎん文化会館(鳥取市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Structure and heme acquisition mechanism of a hemophore HasA having unusual 5-coordinated heme2013

    • Author(s)
      Shingo Nagano
    • Organizer
      6th Japan-Korea Seminars on Biomolecular Science: Experiments and Simulation
    • Place of Presentation
      岡崎コンファレンスセンター(愛知県岡崎市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Book] Fifty years of cytochrome P450 research2014

    • Author(s)
      Shingo Nagano
    • Total Pages
      409
    • Publisher
      Springer
    • Related Report
      2014 Annual Research Report

URL: 

Published: 2013-05-21   Modified: 2019-07-29  

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