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Nanoquantification of the regulatory mechanism of molecular dynamics by development of super-resolution microscopy using single molecule imaging

Research Project

Project/Area Number 25291032
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Biophysics
Research InstitutionTokyo Institute of Technology

Principal Investigator

Tokunaga Makio  東京工業大学, 生命理工学研究科, 教授 (00192659)

Co-Investigator(Renkei-kenkyūsha) SOGAWA KUMIKO (SAKATA KUMIKO)  東京工業大学, 生命理工学研究科, 准教授 (20291073)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥17,940,000 (Direct Cost: ¥13,800,000、Indirect Cost: ¥4,140,000)
Fiscal Year 2015: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2014: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2013: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
Keywords1分子イメージング / バイオイメージング / 細胞機能と構造 / 超解像顕微鏡 / 生体分子計測 / 生細胞分子動態 / 生物物理 / 細胞情報・動態
Outline of Final Research Achievements

We have developed an integrated method for quantitative analysis of molecular dynamics and interactions, combining multiple methods of microscopy, multi-color single-molecule imaging, single molecule tracking and super-resolution microscopy. We have improved resolution in multi-color single-molecule microscopy by optimization of illumination and stabilization of optics. We also imporved accuracy in analysis method for superesolution single-molecule microscopy by optimizing alignment accuracy. The improved integrated microscopy provides a means to obtain new view of spatio-temporal and kinetic parameters of molecular dynamics and interactions in living cells. We carried out imaging analysis of molecules involved in signal transduction and translation.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (46 results)

All 2016 2015 2014 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 4 results,  Acknowledgement Compliant: 2 results) Presentation (39 results) (of which Int'l Joint Research: 2 results,  Invited: 5 results) Book (1 results) Remarks (2 results)

  • [Journal Article] Nuclear actin activates human transcription factor genes including the OCT4 gene.2015

    • Author(s)
      Yamazaki S, Yamamoto K, Tokunaga M, Sakata-Sogawa K, Harata M.
    • Journal Title

      Biosci Biotechnol Biochem.

      Volume: 79(2) Issue: 2 Pages: 242-246

    • DOI

      10.1080/09168451.2014.972332

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Regulation of RNA polymerase II activation by histone acetylation in single living cells2014

    • Author(s)
      Stasevich TJ, Hayashi-Takanaka Y, Sato Y, Maehara K, Ohkawa Y, Sakata-Sogawa K, Tokunaga M, Nagase T, Nozaki N, McNally JG, Kimura H
    • Journal Title

      Nature

      Volume: 516 Issue: 7530 Pages: 272-275

    • DOI

      10.1038/nature13714

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A Facile Preparation of Glass-supported Lipid Bilayers for Analyzing Molecular Dynamics2014

    • Author(s)
      Yuma Ito, Kumiko Sakata-Sogawa, Makio Tokunaga
    • Journal Title

      Analytical Sciences

      Volume: 30 Issue: 12 Pages: 1103-1106

    • DOI

      10.2116/analsci.30.1103

    • NAID

      130004704345

    • ISSN
      0910-6340, 1348-2246
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Characterization of nuclear pore complex components in fission yeast Schizosaccharomyces pombe2014

    • Author(s)
      Asakawa H, Yang HJ, Yamamoto T G, Ohtsuki C, Chikashige Y, Sakata-Sogawa K, Tokunaga M, Iwamoto M, Hiraoka Y, Haraguchi T.
    • Journal Title

      Nucleus

      Volume: 5(印刷中) Issue: 2 Pages: 1-14

    • DOI

      10.4161/nucl.28487

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] 細胞核内アクチンフィラメントのゲノム機能への関与2016

    • Author(s)
      山崎 祥他, 山本 浩二、十川 久美子, 徳永 万喜洋, 原田 昌彦
    • Organizer
      第33回染色体ワークショップ・第14回核ダイナミクス研究会
    • Place of Presentation
      一の坊(宮城県松島町)
    • Year and Date
      2016-01-12
    • Related Report
      2015 Annual Research Report
  • [Presentation] 細胞分化における核内アクチンの機能解析2016

    • Author(s)
      山本 浩志, 山崎 祥他, 十川 久美子, 徳永 万喜洋, 原田 昌彦
    • Organizer
      第33回染色体ワークショップ・第14回核ダイナミクス研究会
    • Place of Presentation
      一の坊(宮城県松島町)
    • Year and Date
      2016-01-12
    • Related Report
      2015 Annual Research Report
  • [Presentation] Dynamics of actin-related protein 4 in living cell nucleus for dynamic chromatin regulation2015

    • Author(s)
      伊藤 由馬, 木村 宏, 原田 昌彦, 十川 久美子, 徳永 万喜洋
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Identification of PDLIM2 interacting protein using yeast two-hybrid system and quantitative imaging analysis2015

    • Author(s)
      Chanyoung Shin, 伊藤 由馬, 十川 久美子, 田中 貴志, 徳永 万喜洋
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Intranuclear dynamics of INO80 chromatin remodeling complex by fluorescent recovery after photobleaching2015

    • Author(s)
      伊藤 由馬, 磯垣 翼, 木村 宏, 原田 昌彦, 十川 久美子, 徳永 万喜洋
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Entropic effects of hydrogen bonds to the double-stranded DNA structure revealed by single-molecule mechanical unzipping2015

    • Author(s)
      深川 暁宏, 廣島 通夫, 徳永 万喜洋
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Quantitative analysis of dynamics of negative elongation factor NELF and DSIF by single molecule imaging2015

    • Author(s)
      池田 大地, 伊藤 由馬, 徳永 万喜洋, 十川 久美子
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] CLIP-170 phosphorylation mediates repositioning of microtubule-organizing center during T cell activation2015

    • Author(s)
      Wei Ming Lim, 伊藤 由馬, 徳永 万喜洋, 十川 久美子
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Quantitative imaging analysis of anti-inflammatory protein PDLIM2 activation upon LPS stimulation2015

    • Author(s)
      市川 翔太, 伊藤 由馬, 田中 貴志, 徳永 万喜洋, 十川 久美子
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス(金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Integrated Imaging Approach to the Study of Chromatin Dynamics2015

    • Author(s)
      Ito Y, Harata M, Kimura K, Sakata-Sogawa K, Tokunaga M
    • Organizer
      International Symposium on Chromatin Structure, Dynamics, and Function
    • Place of Presentation
      Awaji Yumebutai Internationl Conference Center, Awaji, Hyogo, Japan
    • Year and Date
      2015-08-23
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamics of INO80 Chromatin Remodeling Complex by Live-cell Molecular Imaging2015

    • Author(s)
      Ito Y, Harata M, Kimura K, Sakata-Sogawa K, Tokunaga M
    • Organizer
      International Symposium on Chromatin Structure, Dynamics, and Function
    • Place of Presentation
      Awaji Yumebutai Internationl Conference Center, Awaji, Hyogo, Japan
    • Year and Date
      2015-08-23
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 生体分子機能の1分子計測とイメージング定量解析2015

    • Author(s)
      徳永 万喜洋
    • Organizer
      第12回原子・分子・光科学(AMO)討論会
    • Place of Presentation
      東京大学理学部化学本館(東京都文京区)
    • Year and Date
      2015-06-20
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 核内アクチンフィラメントの転写制御への関与とその分子機構の解析2014

    • Author(s)
      山崎 祥他, 山本 浩二、十川 久美子, 徳永 万喜洋, 原田 昌彦
    • Organizer
      第32回染色体ワークショップ・第13回核ダイナミクス研究会
    • Place of Presentation
      安芸グランドホテル(広島県)
    • Year and Date
      2014-12-15 – 2014-12-17
    • Related Report
      2014 Annual Research Report
  • [Presentation] Roles of nuclear filamentous-actin in transcriptional regulation2014

    • Author(s)
      Shota Yamazaki, Koji Yamamoto, Kumiko Sakata-Sogawa, Makio Tokunaga, Masahiko Harata
    • Organizer
      2014 ASCB/IFCB Meeting (The American Society for Cell Biology / International Federation for Cell Biology)
    • Place of Presentation
      Pennsylvania Convention Center, Philadelphia, USA
    • Year and Date
      2014-12-06 – 2014-12-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] Microtubules Instability and Dynamics Mediated by CLIP-170 in T Cells2014

    • Author(s)
      Wei Ming Lim,伊藤 由馬, 十川 久美子, 徳永 万喜洋
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Live cell single-molecule imaging of T cell receptor and microcluster with planar lipid bilayers2014

    • Author(s)
      伊藤 由馬, 十川 久美子, 徳永 万喜洋
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Analysis of the function of nuclear actin in cell differentiation2014

    • Author(s)
      山本 浩志, 山崎 祥他, 十川 久美子, 徳永 万喜洋, 原田 昌彦
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      国立京都国際会館・グランドプリンスホテル京都(京都)
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Functional regulation of the dynamics of actin in the nucleus2014

    • Author(s)
      山崎 祥他, 十川 久美子, 徳永 万喜洋, 原田 昌彦
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      国立京都国際会館・グランドプリンスホテル京都(京都)
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] T cell receptor on the surface of living cells changes in the dynamics inside microclusters revealed by single-molecule imaging analysis2014

    • Author(s)
      伊藤 由馬, 十川 久美子, 徳永 万喜洋
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Studies of dynamic chromatin structure and function to understand fundamentals of life (organizer introduction)2014

    • Author(s)
      徳永万喜洋, 原口徳子
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2014-09-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] Studies of dynamic chromatin structure and function to understand fundamentals of life2014

    • Author(s)
      十川 久美子, 伊藤 由馬, 深川 暁宏, 原田 昌彦, 木村 宏, 徳永 万喜洋
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2014-09-26
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] The elucidation of the molecular mechanism of PDLIM2 activation2014

    • Author(s)
      鳥山 悟, 伊藤 由馬, 田中 貴志, 徳永 万喜洋, 十川 久美子
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2014-09-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] A series of GECO mutants suitable for calcium imaging in a wide range of calcium concentration2014

    • Author(s)
      大木 杜生, 伊藤 由馬, 徳永 万喜洋, 十川 久美子
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2014-09-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] Formation of microclusters of receptor molecules improves signal/noise ratio in cellular signal transduction2014

    • Author(s)
      深川 暁宏, 十川 久美子, 徳永 万喜洋
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2014-09-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] Single molecule imaging and quantitative analysis of dynamics of negative elongation factor NELF2014

    • Author(s)
      池田 大地, 伊藤 由馬, 徳永 万喜洋, 十川 久美子
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2014-09-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] 1分子研究が明かす動的でエントロピー的な分子間・分子内相互作用

    • Author(s)
      徳永万喜洋、深川暁弘、十川久美子
    • Organizer
      日本顕微鏡学会第69回学術講演会・シンポジウム“超解像顕微鏡技術と生物応用
    • Place of Presentation
      ホテル阪急エキスポパーク(大阪府)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 1分子イメージング ─TIRF法とHILO法を中心として─

    • Author(s)
      徳永万喜洋
    • Organizer
      第21回細胞生物学ワークショップ
    • Place of Presentation
      情報通信研究機構・未来ICT研究所(兵庫県)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 分子1個を光で観る生命のダイナミックな姿

    • Author(s)
      徳永万喜洋
    • Organizer
      一般公開シンポジウム「DNAをあやつる生物のしくみ」
    • Place of Presentation
      千里ライフサイエンスセンター(大阪府)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Why do cells use signaling cascades with a variety of the number of steps?

    • Author(s)
      深川暁弘、梶田真司、十川久美子、徳永万喜洋
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Single molecule analysis of signaling membrane proteins in T cell microcluster by multicolor live cell imaging

    • Author(s)
      伊藤由馬、十川久美子、徳永万喜洋
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2013 Annual Research Report
  • [Presentation] FRET-based analysis of interactions between elongin B and elongin C

    • Author(s)
      大山浩史、伊藤由馬、十川久美子、徳永万喜洋
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Quantitative analysis of molecular dynamics of Arp4beta upon transcriptional activation by single-molecule fluorescence imaging and FRAP

    • Author(s)
      稲葉直道、伊藤由馬、原田昌彦、木村宏、徳永万喜洋、十川久美子
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Quantification of calcium concentration in cells by imaging analysis using GEM-GECO

    • Author(s)
      大木杜生、伊藤由馬、十川久美子、徳永万喜洋
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2013 Annual Research Report
  • [Presentation] The elucidation of the mechanism of PDLIM2 localization regulation

    • Author(s)
      鳥山悟、伊藤由馬、徳永万喜洋、十川久美子
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Microtubules Organizing Center (MTOC) Dynamics and Migration Upon T Cell Activation

    • Author(s)
      Wei Ming Lim、伊藤由馬、十川久美子、徳永万喜洋
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Responses of a stochastic signaling cascade to input signals with extrinsic noise

    • Author(s)
      千葉晃生、深川暁弘、十川久美子、徳永万喜洋
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Action mechanism of neuronal membrane lipid raft

    • Author(s)
      松島悠、戸田収、伊藤由馬、十川久美子、Thanai Paxton、朴明宣、大野敏、米澤貴之、横川隆志、西川一八、鄭雄一、徳永万喜洋、林宣宏
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸国際展示場(兵庫県)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Quantitative imaging analysis of molecular dynamics of actin-related protein in the nucleus

    • Author(s)
      Yuma Ito, Naomichi Inaba, Masahiko Harata, Hiroshi Kimura, Makio Tokunaga, Kumiko Sakata-Sogawa
    • Organizer
      58th Annual Meeting of Biophysical Society (USA)
    • Place of Presentation
      Moscone Center, San Francisco (USA)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Molecular imaging analysis of regulatory mechanism of inflammatory response

    • Author(s)
      Yuma Ito, Jun Takimoto, Takashi Tanaka, Tsuneyasu Kaisho, Kumiko Sakata-Sogawa, Makio Tokunaga
    • Organizer
      58th Annual Meeting of Biophysical Society (USA)
    • Place of Presentation
      Moscone Center, San Francisco (USA)
    • Related Report
      2013 Annual Research Report
  • [Book] 1分子生物学2014

    • Author(s)
      原田慶恵、石渡信一、宝谷紘一、船津高志、城口克之、吉田賢右、上村想太郎、井出徹、佐甲靖志、上田昌宏、十川久美子、樋口秀男、多田隈尚史、渡邉朋信、徳永万喜洋、石島秋彦、安藤敏夫、岡田康志、他
    • Total Pages
      304
    • Publisher
      化学同人
    • Related Report
      2014 Annual Research Report
  • [Remarks] 東京工業大学 生命理工学研究科 生命情報専攻 徳永・十川研究室

    • URL

      http://www.toku.bio.titech.ac.jp/

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
  • [Remarks] 東京工業大学 生命理工学研究科 生命情報専攻 徳永・十川研究室

    • URL

      http://www.toku.bio.titech.ac.jp/

    • Related Report
      2013 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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