• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

New Paradigm for Theory of Protein Hydration: Elucidation of Biological Self-Assembly Processes in a Unified Manner

Research Project

Project/Area Number 25291035
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Biophysics
Research InstitutionKyoto University

Principal Investigator

Kinoshita Masahiro  京都大学, エネルギー理工学研究所, 教授 (90195339)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥17,160,000 (Direct Cost: ¥13,200,000、Indirect Cost: ¥3,960,000)
Fiscal Year 2015: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2014: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2013: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Keywords自己組織化 / 構造形成 / フォールディング / 分子認識 / ATP駆動タンパク質 / 水和 / エントロピー / 積分方程式論 / ATP駆動蛋白質 / 秩序構造形成 / 水 / 蛋白質 / 生体分子 / 統計熱力学
Outline of Final Research Achievements

The structures formed by the self-assembly of biomolecules are collapsed by applying high pressures (e.g., pressure denaturation of a protein, dissociation of filamentous actin (F-actin) into monomers, and destruction of amyloid fibril). The power of the formation becomes weaker at low temperatures (e.g., cold denaturation of a protein and weakened binding of myosin to F-actin). We have shown the following: These experimental facts are governed by the biomolecule-water many-body correlation component of the effect of configurational entropy of water; protein folding, various types of denaturation, and cosolvent effects on protein stability can be elucidated in a unified manner within the same theoretical framework; the diverse molecular recognitions share the same mechanism; physics of the multidrug efflux by ABC transporter is explainable; and a novel concept can be conferred upon the mechanism of functional expression of ATP-driven proteins.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (81 results)

All 2016 2015 2014 2013 Other

All Journal Article (18 results) (of which Peer Reviewed: 18 results,  Acknowledgement Compliant: 13 results,  Open Access: 1 results) Presentation (57 results) (of which Invited: 7 results) Book (1 results) Remarks (3 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 1 results)

  • [Journal Article] A highly efficient hybrid method for calculating the hydration free energy of a protein2016

    • Author(s)
      H. Oshima, M. Kinoshita
    • Journal Title

      Journal of Computational Chemistry

      Volume: 37 Issue: 8 Pages: 712-723

    • DOI

      10.1002/jcc.24253

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Dynamics of the entropic insertion of a large sphere into a cylindrical vessel2016

    • Author(s)
      Ryohei Hara, Ken-ichi Amano, Masahiro Kinoshita, and Akira Yoshimori
    • Journal Title

      The Journal of Chemical Physics

      Volume: 144 Issue: 10 Pages: 105103-105103

    • DOI

      10.1063/1.4943394

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effects of Monohydric Alcohols and Polyols on the Thermal Stability of a Protein2016

    • Author(s)
      S. Murakami and M. Kinoshita
    • Journal Title

      Journal of Chemical Physics

      Volume: 144 Issue: 12

    • DOI

      10.1063/1.4944680

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] An accurate and efficient computation method of the hydration free energy of a large, complex molecule2015

    • Author(s)
      T. Yoshidome, T. Ekimoto, N. Matubayasi, Y. Harano, M. Kinoshita, and M. Ikeguchi
    • Journal Title

      J. Chem. Phys.

      Volume: 142 Issue: 17 Pages: 175101-11

    • DOI

      10.1063/1.4919636

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Physicochemical origin of high correlation between thermal stability of a protein and its packing efficiency: a theoretical study for staphylococcal nuclease mutants2015

    • Author(s)
      K. Oda and M. Kinoshita
    • Journal Title

      Biophysics and Physicobiology

      Volume: 12 Issue: 0 Pages: 1-12

    • DOI

      10.2142/biophysico.12.0_1

    • NAID

      130005091756

    • ISSN
      2189-4779
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Penetration of platinum complex anions into porous silicon: Anomalous effect of pore diameter caused by surface-induced phase transition2015

    • Author(s)
      Akira Koyama, Kazuhiro Fukami, Tetsuo Sakka, Takeshi Abe, Atsushi Kitada, Kuniaki Murase, Masahiro Kinoshita
    • Journal Title

      J. Phys. Chem. C

      Volume: 119 Issue: 33 Pages: 19105-19116

    • DOI

      10.1021/acs.jpcc.5b03852

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] On the physics of thermal-stability changes upon mutations of a protein2015

    • Author(s)
      S. Murakami, H. Oshima, T. Hayashi, M. Kinoshita
    • Journal Title

      The Journal of Chemical Physics

      Volume: 143 Issue: 12 Pages: 125102-125102

    • DOI

      10.1063/1.4931814

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Mechanism of One-to-many Molecular Recognition Accompanying Target-dependent Structure Formation: For the Tumor Suppressor p53 Protein as an Example2015

    • Author(s)
      T. Hayashi, H. Oshima, S. Yasuda, M. Kinoshita
    • Journal Title

      Journal of Physical Chemistry B

      Volume: 119 Issue: 44 Pages: 14120-14129

    • DOI

      10.1021/acs.jpcb.5b08513

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Statistical Thermodynamics for Functionally Rotating Mechanism of the Multidrug Efflux Transporter AcrB2015

    • Author(s)
      H. Mishima, H. Oshima, S. Yasuda, M. Kinoshita
    • Journal Title

      Journal of Physical Chemistry B

      Volume: 119 Issue: 8 Pages: 3423-3433

    • DOI

      10.1021/jp5120724

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Essential roles of protein-solvent many-body correlation in solvent-entropy effect on protein folding and denaturation: Comparison between hard-sphere solvent and water2015

    • Author(s)
      H. Oshima, M. Kinoshita
    • Journal Title

      The Journal of Chemical Physics

      Volume: 142 Issue: 14 Pages: 145103-145103

    • DOI

      10.1063/1.4917075

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition2014

    • Author(s)
      T. Hayashi, H. Oshima, T. Mashima, T. Nagata, M. Katahira, M. Kinoshita
    • Journal Title

      Nucleic Acids Research

      Volume: 42 Issue: 11 Pages: 6861-6875

    • DOI

      10.1093/nar/gku382

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Changes in hydrophobic and hydrophilic hydration properties caused by raising the pressure or by lowering the temperature2014

    • Author(s)
      M. Kinoshita, H. Oshima
    • Journal Title

      Chemical Physics Letters

      Volume: 610-611 Pages: 1-7

    • DOI

      10.1016/j.cplett.2014.07.010

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Effect of Cations Species on Surface-Induced Phase Transition Observed for Platinum Complex Anions in Platinum Electrodeposition Using Nanoporous Silicon2014

    • Author(s)
      Ryo KODA, Akira KOYAMA, Kazuhiro FUKAMI, Naoya NISHI, Tetsuo SAKKA, Takeshi ABE, Atsushi KITADA, Kuniaki MURASE, and Masahiro KINOSHITA
    • Journal Title

      Journal of Chemical Physics

      Volume: 141 Issue: 7 Pages: 074701-074701

    • DOI

      10.1063/1.4892596

    • NAID

      120005477195

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Physical Origins of the High Structural Stability of CLN025 with Only Ten Residues2014

    • Author(s)
      Satoshi YASUDA, Tomohiko HAYASHI, and Masahiro KINOSHITA
    • Journal Title

      Journal of Chemical Physics

      Volume: 141 Issue: 10

    • DOI

      10.1063/1.4894753

    • NAID

      120005702708

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Statistical Thermodynamics for the Molecular Recognition Accompanied by Global Structural Change of a Molecule upon Binding2014

    • Author(s)
      Tomohiko Hayashi, Hiraku Oshima, Tsukasa Mashima, Takashi Nagata, Masato Katahira, and Masahiro Kinoshita
    • Journal Title

      Nucleic Acids Research

      Volume: in press

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effects of sugars on the thermal stability of a protein2013

    • Author(s)
      Hiraku Oshima and Masahiro Kinoshita
    • Journal Title

      The Journal of Chemical Physics

      Volume: 138 Issue: 24

    • DOI

      10.1063/1.4811287

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] On the Physics of Multidrug Efflux through a Biomolecular Complex2013

    • Author(s)
      H. Mishima, H. Oshima, S. Yasuda, K. Amano, M Kinoshita
    • Journal Title

      Journal of Chemical Physics

      Volume: 139 Issue: 20

    • DOI

      10.1063/1.4832896

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A New Theoretical Approach to Biological Self-Assembly2013

    • Author(s)
      Masahiro Kinoshita
    • Journal Title

      Biophysical Reviews

      Volume: 5 Issue: 2 Pages: 283-293

    • DOI

      10.1007/s12551-012-0072-0

    • NAID

      120005477197

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] Identification of thermostabilizing mutations for membrane proteins: Rapid method based on statistical thermodynamics2016

    • Author(s)
      S. Yasuda, Y. Kajiwara, Y. Takamuku, N. Suzuki, T. Murata, and M. Kinoshita
    • Organizer
      Joint Workshop on Chirality in Chiba University (WCCU) and on Soft-Molecule Activation
    • Place of Presentation
      千葉大学
    • Year and Date
      2016-03-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] Identification of thermostabilizing mutations for membrane proteins: Rapid method based on statistical thermodynamics2016

    • Author(s)
      S. Yasuda, Y. Kajiwara, Y. Takamuku, N. Suzuki, T. Murata, and M. Kinoshita
    • Organizer
      The 1st Symposium of Chiral Molecular Science & Technology in Chiba University -Advanced Materials Science, Biology & Nanophotonics in Chiba
    • Place of Presentation
      千葉大学
    • Year and Date
      2016-02-29
    • Related Report
      2015 Annual Research Report
  • [Presentation] Expression, purification and crystallization of 5-HT2A receptor2016

    • Author(s)
      N. Suzuki, A. Saito, K. Hitomi, K. Mizutani, Y. Kajiwara, S. Yasuda, M. Kinoshita, and T. Murata
    • Organizer
      Identification of thermostabilizing mutations for membrane proteins: Rapid method based on statistical thermodynamics
    • Place of Presentation
      千葉大学
    • Year and Date
      2016-02-29
    • Related Report
      2015 Annual Research Report
  • [Presentation] Essential roles of water in actin-myosin binding2016

    • Author(s)
      H. Oshima, T. Hayashi, M. Kinoshita
    • Organizer
      Biophysical Society 60th Annual Meeting
    • Place of Presentation
      Los Angeles Convention Center, California, USA
    • Year and Date
      2016-02-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] タンパク質の水和自由エネルギーの高速計算法の開発2015

    • Author(s)
      尾嶋拓
    • Organizer
      鳩山サイエンスフォーラム in 北千住
    • Place of Presentation
      東京電機大学東京千住キャンパス
    • Year and Date
      2015-12-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] Mechanism of one-to-many molecular recognition accompanying target-dependent structure formation: For the tumor suppressor p53 protein2015

    • Author(s)
      T. Hayashi, H. Oshima, S. Yasuda, and M. Kinoshita
    • Organizer
      PACIFICHEM2015
    • Place of Presentation
      Hawaii Convention Center
    • Year and Date
      2015-12-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] Effects of cosolvent addition on the thermal stability of a protein2015

    • Author(s)
      S. Murakami and M. Kinoshita
    • Organizer
      PACIFICHEM2015
    • Place of Presentation
      Hawaii Convention Center
    • Year and Date
      2015-12-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] Theoretical prediction of mutations leading to enhanced structural stability of GPCRs2015

    • Author(s)
      Y. Kajiwara, S. Yasuda, Y. Takamuku, N. Suzuki, T. Murata, and M. Kinoshita
    • Organizer
      PACIFICHEM2015
    • Place of Presentation
      Hawaii Convention Center
    • Year and Date
      2015-12-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] Expression, purification and crystallization of 5-HT2A receptor2015

    • Author(s)
      N. Suzuki, A. Saito, K. Hitomi, Y. Takamuku, K. Mizutani, Y. Kajiwara, S. Yasuda, M. Kinoshita, and T. Murata
    • Organizer
      GPCR workshop 2015
    • Place of Presentation
      Big island, Hawaii (USA)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] Development of thermostabilization method by mutation for GPCR: I. Theoretical prediction on the basis of statistical thermodynamics2015

    • Author(s)
      S. Yasuda, Y. Kajiwara, Y. Takamuku, N. Suzuki, T. Murata, and M. Kinoshita
    • Organizer
      GPCR workshop 2015
    • Place of Presentation
      Big island, Hawaii (USA)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] Development of thermostabilization method by mutations for GPCR: II. Experimental verification of the theoretical prediction2015

    • Author(s)
      Y. Takamuku, S. Yasuda, Y. Kajiwara, N. Suzuki, M. Kinoshita, and T. Murata
    • Organizer
      GPCR workshop 2015
    • Place of Presentation
      Big island, Hawaii (USA)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] Towards structure determination of the human prostanoid receptor bound to the antibody2015

    • Author(s)
      Y. Toyoda, K. Morimoto, R. Suno, Y. Sekiguchi, K. Yamashita, K. Hirata, S. Yasuda, Y. Kajiwara, T. Shimizu, Y. Urushibata, S. Yoshida, T. Kuribara, T. Hosoya, M. Kinoshita, Y. Sugimoto, N. Nomura, T. Murata, K. Takayama, M. Yamamoto, S. Narumiya, S. Iwata, and T. Kobayashi
    • Organizer
      GPCR workshop 2015
    • Place of Presentation
      Big island, Hawaii (USA)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] On the statistical thermodynamics of actin polymerization in aqueous solution2015

    • Author(s)
      T. Hayashi, H. Oshima, and M. Kinoshita
    • Organizer
      第53回 日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Prediction of thermostabilizing mutations for G protein-coupled receptors: Development of free-energy function2015

    • Author(s)
      S. Yasuda, Y. Kajiwara, Y. Takamuku, N. Suzuki, T. Murata, and M. Kinoshita
    • Organizer
      第53回 日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Effects of cosolvent addition on the thermal stability of a protein2015

    • Author(s)
      S. Murakami and M. Kinoshita
    • Organizer
      第53回 日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Prediction of thermostabilizing mutations for G protein-coupled receptors: Construction of an efficient method2015

    • Author(s)
      Y. Kajiwara, S. Yasuda, Y. Takamuku, N. Suzuki, T. Murata, and M. Kinoshita
    • Organizer
      第53回 日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] A theoretical analysis on water roles in actin-myosin binding2015

    • Author(s)
      H. Oshima, T. Hayashi, M. Kinoshita
    • Organizer
      第53回 日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] 溶媒エントロピーの多体相関成分の蛋白質安定性への影響2015

    • Author(s)
      尾嶋拓
    • Organizer
      九大物性理論研究室・統計物理学研究室合同セミナー
    • Place of Presentation
      九州大学箱崎キャンパス
    • Year and Date
      2015-06-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] 蛋白質水和自由エネルギー計算用の一般化ボルン法と形態計測学的アプローチの統合型方法論2015

    • Author(s)
      尾嶋拓、木下正弘
    • Organizer
      日本物理学会第70回年次大会
    • Place of Presentation
      早稲田大学
    • Year and Date
      2015-03-21 – 2015-03-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] Physical Picture for Functionally Rotating Mechanism of the Multidrug Efflux Transporter AcrB2015

    • Author(s)
      H. Mishima, H. Oshima, S. Yasuda, and M. Kinoshita
    • Organizer
      Biophysical Society 59th Annual Meeting
    • Place of Presentation
      Baltimore Convention Center, Maryland, USA
    • Year and Date
      2015-02-07 – 2015-02-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Statistical Thermodynamics of One-to-many Molecular Recognition Accompanied by Partner-dependent Folding: in the Case of a Tumor Suppressor Protein p532015

    • Author(s)
      T. Hayashi, H. Oshima, S. Yasuda, and M. Kinoshita
    • Organizer
      Biophysical Society 59th Annual Meeting
    • Place of Presentation
      Baltimore Convention Center, Maryland, USA
    • Year and Date
      2015-02-07 – 2015-02-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Theoretical Prediction of Mutations Improving Thermal Stability of Adenosine A2a Receptor2015

    • Author(s)
      Y. Kajiwara, S. Yasuda, Y. Takamuku, T. Murata, and M. Kinoshita
    • Organizer
      Biophysical Society 59th Annual Meeting
    • Place of Presentation
      Baltimore Convention Center, Maryland, USA
    • Year and Date
      2015-02-07 – 2015-02-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Theoretical Prediction of Thermal-Stability Changes upon Mutations of a Protein2015

    • Author(s)
      S. Murakami, H. Oshima, T. Hayashi, and M. Kinoshita
    • Organizer
      Biophysical Society 59th Annual Meeting
    • Place of Presentation
      Baltimore Convention Center, Maryland, USA
    • Year and Date
      2015-02-07 – 2015-02-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] 水溶液中における生体分子自己組織化過程の統計熱力学2014

    • Author(s)
      木下正弘
    • Organizer
      Plasma Conference 2014, シンポジウム3:「物質間境界層に於ける環境適応機能の発現」
    • Place of Presentation
      朱鷺メッセ,新潟県
    • Year and Date
      2014-11-18 – 2014-11-21
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Nonlinear Behavior of a Complex System Comprising Multiple Material Elements: with the Emphasis on Microscopic Self-assembly of Biomolecules2014

    • Author(s)
      M. Kinoshita
    • Organizer
      The 5th International Symposium of Advanced Energy Science-Principle of Zero-Emission Energy-
    • Place of Presentation
      Obaku Plaza, Kyoto University, Uji
    • Year and Date
      2014-10-01 – 2014-10-02
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Physical Picture for Mechanism of Conformational Rotation of Multidrug Transporter AcrB2014

    • Author(s)
      H. Mishima, H. Oshima, S. Yasuda, and M. Kinoshita
    • Organizer
      日本生物物理学会第52回年会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Statistical Thermodynamics of One-to-many Molecular Recognition Accompanied by Partner-dependent Folding: in the Case of p53 Protein2014

    • Author(s)
      T. Hayashi, H. Oshima, S. Yasuda, and M. Kinoshita
    • Organizer
      日本生物物理学会第52回年会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Effect of Backbone and Side-chain Packing on Structural Stability of the Protein with Only Ten Residues2014

    • Author(s)
      S. Yasuda, T. Hayashi, and M. Kinoshita
    • Organizer
      日本生物物理学会第52回年会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Theoretical Prediction of Thermal-Stability Changes upon Mutations of a Protein2014

    • Author(s)
      S. Murakami, H. Oshima, T. Hayashi, and M. Kinoshita
    • Organizer
      日本生物物理学会第52回年会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Theoretical Prediction of Mutations Improving Thermal Stability of Adenosine A2a Receptor2014

    • Author(s)
      Y. Kajiwara, S. Yasuda, Y. Takamuku, T. Murata, and M. Kinoshita
    • Organizer
      日本生物物理学会第52回年会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 蛋白質の構造安定性における溶媒エントロピーの効果-蛋白質-溶媒間多体相関成分の重要性について-2014

    • Author(s)
      尾嶋拓、木下正弘
    • Organizer
      日本物理学会2014年秋季大会
    • Place of Presentation
      中部大学春日井キャンパス
    • Year and Date
      2014-09-07 – 2014-09-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] AcrBによる薬剤の取込・排出機構に対する物理描像の構築2014

    • Author(s)
      三嶋浩和、尾嶋拓、安田賢司、木下正弘
    • Organizer
      日本物理学会2014年秋季大会
    • Place of Presentation
      中部大学春日井キャンパス
    • Year and Date
      2014-09-07 – 2014-09-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] Physical Origin of Sugar-induced Enhancement in the Thermal Stability of a Protein2014

    • Author(s)
      H. Oshima and M. Kinoshita
    • Organizer
      Liquids 2014
    • Place of Presentation
      University of Lisbon, Portugal
    • Year and Date
      2014-07-21 – 2014-07-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] Crucial importance of protein-solvent many-body correlation for solvent-entropy effect in structural stability of a protein2014

    • Author(s)
      H. Oshima and M. Kinoshita
    • Organizer
      Biophysical Society 58th Annual Meeting
    • Place of Presentation
      Moscone Center, San Francisco, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] Statistical thermodynamics for binding of an RNA aptamer and a partial peptide of a prion protein2014

    • Author(s)
      T. Hayashi, H. Oshima, T. Mashima, T. Nagata, M. Katahira, and M. Kinoshita
    • Organizer
      Biophysical Society 58th Annual Meeting
    • Place of Presentation
      Moscone Center, San Francisco, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] Theoretical analysis on structural stability of CLN025 using our free-energy function2014

    • Author(s)
      S. Yasuda, T. Hayashi, and M. Kinoshita
    • Organizer
      Biophysical Society 58th Annual Meeting
    • Place of Presentation
      Moscone Center, San Francisco, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] Physics of multidrug efflux through a biomolecular complex2014

    • Author(s)
      H. Mishima, H. Oshima, S. Yasuda, K. Amano, and M. Kinoshita
    • Organizer
      Biophysical Society 58th Annual Meeting
    • Place of Presentation
      Moscone Center, San Francisco, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] Crucial importance of translational displacement of water molecules in biological self-assembly2014

    • Author(s)
      M. Kinoshita
    • Organizer
      Nagoya Symposium on Depletion Forces: Celebrating the 60th Anniversary of the Asakura-Oosawa Theory
    • Place of Presentation
      Noyori Conference Hall and Sakata & Hirata Hall, Nagoya University
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Crucial importance of protein-solvent many-body correlation for solvent-entropy effect in structural stability of a protein2014

    • Author(s)
      H. Oshima and M. Kinoshita
    • Organizer
      Nagoya Symposium on Depletion Forces: Celebrating the 60th Anniversary of the Asakura-Oosawa Theory
    • Place of Presentation
      Noyori Conference Hall and Sakata & Hirata Hall, Nagoya University
    • Related Report
      2013 Annual Research Report
  • [Presentation] Statistical thermodynamics for the molecular recognition accompanied by a global structural change of a molecule2014

    • Author(s)
      T. Hayashi, H. Oshima, T. Mashima, T. Nagata, M. Katahira, and M. Kinoshita
    • Organizer
      Nagoya Symposium on Depletion Forces: Celebrating the 60th Anniversary of the Asakura-Oosawa Theory
    • Place of Presentation
      Noyori Conference Hall and Sakata & Hirata Hall, Nagoya University
    • Related Report
      2013 Annual Research Report
  • [Presentation] Structural stability of the ten-amino acid protein: Toward designing a foldable protein2014

    • Author(s)
      S. Yasuda, T. Hayashi, and M. Kinoshita
    • Organizer
      Nagoya Symposium on Depletion Forces: Celebrating the 60th Anniversary of the Asakura-Oosawa Theory
    • Place of Presentation
      Noyori Conference Hall and Sakata & Hirata Hall, Nagoya University
    • Related Report
      2013 Annual Research Report
  • [Presentation] タンパク質の熱安定性への糖の影響2014

    • Author(s)
      尾嶋拓
    • Organizer
      日本物理学会第69回年次大会
    • Place of Presentation
      東海大学
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] ポーラスシリコンへの白金置換析出:共存カチオンの影響2014

    • Author(s)
      幸田吏央,小山 輝,深見一弘,西 直哉,作花哲夫,安部武志,北田 敦,邑瀬邦明,木下正弘
    • Organizer
      電気化学会第81回大会
    • Place of Presentation
      関西大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] ポーラスシリコンへの白金置換析出:孔径と白金錯イオン径の影響2014

    • Author(s)
      小山 輝,深見一弘,幸田吏央,西 直哉,作花哲夫,安部武志,北田 敦,邑瀬邦明,木下正弘
    • Organizer
      電気化学会第81回大会
    • Place of Presentation
      関西大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] A novel computation method of hydration free energy: A hybrid of the method of energy representation and the morphometric approach2013

    • Author(s)
      T. Yoshidome, T. Ekimoto, N. Matubayasi, R. Roth, Y. Harano, M. Kinoshita, and M. Ikeguchi
    • Organizer
      7th Mini-Symposium on Liquids
    • Place of Presentation
      Kyushu University
    • Related Report
      2013 Annual Research Report
  • [Presentation] A theoretical analysis for sugar-induced thermal stability of a protein2013

    • Author(s)
      H. Oshima and M. Kinoshita
    • Organizer
      7th Mini-Symposium on Liquids
    • Place of Presentation
      Kyushu University
    • Related Report
      2013 Annual Research Report
  • [Presentation] Effects of sugars on the thermal stability of a protein2013

    • Author(s)
      H. Oshima and M. Kinoshita
    • Organizer
      25th IUPAP International Conference on Statistical Physics
    • Place of Presentation
      Seoul National University, Korea
    • Related Report
      2013 Annual Research Report
  • [Presentation] Structural stability of proteins in aqueous and nonpolar environments2013

    • Author(s)
      S. Yasuda, H. Oshima, and M. Kinoshita
    • Organizer
      25th IUPAP International Conference on Statistical Physics
    • Place of Presentation
      Seoul National University, Korea
    • Related Report
      2013 Annual Research Report
  • [Presentation] Structural stability of proteins in aqueous and nonpolar environments2013

    • Author(s)
      M. Kinoshita
    • Organizer
      The 13th KIAS Conference on Protein Structure and Function
    • Place of Presentation
      Korea Institute for Advanced Study, Korea
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Solvent-entropy effect in structural stability of a protein: Crucial importance of protein-solvent many-body correlation2013

    • Author(s)
      H. Oshima, S. Murakami, and M. Kinoshita
    • Organizer
      日本生物物理学会第51回年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Annual Research Report
  • [Presentation] Statistical thermodynamics for binding of an RNA aptamer and a partial peptide of a prion protein2013

    • Author(s)
      T. Hayashi, H. Oshima, T. Mashima, T. Nagata, M. Katahira, and M. Kinoshita
    • Organizer
      日本生物物理学会第51回年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Annual Research Report
  • [Presentation] Theoretical enhancement of structural stability of a membrane protein for X-ray crystallography2013

    • Author(s)
      S. Yasuda, H. Oshima, T. Murata, and M. Kinoshita
    • Organizer
      日本生物物理学会第51回年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Annual Research Report
  • [Presentation] On the physics of multidrug efflux through a biomolecular complex2013

    • Author(s)
      H. Mishima, H. Oshima, S. Yasuda, K. Amano, and M. Kinoshita
    • Organizer
      日本生物物理学会第51回年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Annual Research Report
  • [Presentation] Theoretical prediction of thermal-stability changes upon mutations of a protein2013

    • Author(s)
      S. Murakami, H. Oshima, T. Hayashi, M. Kinoshita
    • Organizer
      日本生物物理学会第51回年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Annual Research Report
  • [Presentation] 生体系における自己組織化およびATP駆動蛋白質機能発現の統一的理解

    • Author(s)
      木下正弘
    • Organizer
      新学術領域研究「水を主役としたATPエネルギー変換」終了公開シンポジウム
    • Place of Presentation
      KKRホテル東京
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 水および疎水環境中における蛋白質の立体構造安定性

    • Author(s)
      安田賢司, 尾嶋拓, 木下正弘
    • Organizer
      新学術領域研究「水を主役としたATPエネルギー変換」終了公開シンポジウム
    • Place of Presentation
      KKRホテル東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] Crucial importance of translational displacement of water molecules in biological self-assembly

    • Author(s)
      M. Kinoshita
    • Organizer
      The 4th International Symposium of Advanced Energy Science-Principle of Zero-Emission Energy-
    • Place of Presentation
      Obaku Plaza, Kyoto University, Uji
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Book] Mechanism of Functional Expression of the Molecular Machine2016

    • Author(s)
      Masahiro KINOSHITA
    • Publisher
      Springer
    • Related Report
      2015 Annual Research Report
  • [Remarks] 木下正弘研究室

    • URL

      http://www.iae.kyoto-u.ac.jp/centerbunya/kinoshita

    • Related Report
      2015 Annual Research Report
  • [Remarks] http://www.iae.kyoto-u.ac.jp/centerbunya/kinoshita

    • Related Report
      2014 Annual Research Report
  • [Remarks] 木下研究室-京都大学エネルギー理工学研究所

    • URL

      http://www.iae.kyoto-u.ac.jp/centerbunya/kinoshita

    • Related Report
      2013 Annual Research Report
  • [Patent(Industrial Property Rights)] 膜タンパク質の熱安定化変異体予測装置,熱安定化変異体予測方法,および,プログラム2015

    • Inventor(s)
      村田武士,木下正弘,安田賢司,他4名
    • Industrial Property Rights Holder
      村田武士,木下正弘,安田賢司,他4名
    • Industrial Property Rights Type
      特許
    • Filing Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 膜タンパク質の熱安定化変異体予測装置,熱安定化変異体予測方法,および,プログラム2014

    • Inventor(s)
      村田武士,木下正弘,安田賢司,高椋勇樹,水谷健二
    • Industrial Property Rights Holder
      村田武士,木下正弘,安田賢司,高椋勇樹,水谷健二
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2014-130560
    • Filing Date
      2014-06-25
    • Related Report
      2014 Annual Research Report

URL: 

Published: 2013-05-21   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi