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Elucidating salvaging role of tissue-specific organelle DNA degradation conserved in land plants

Research Project

Project/Area Number 25291063
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Plant molecular biology/Plant physiology
Research InstitutionOkayama University

Principal Investigator

SAKAMOTO Wataru  岡山大学, その他部局等, 教授 (20222002)

Co-Investigator(Kenkyū-buntansha) Tsuneaki TAKAMI  岡山大学, 資源植物科学研究所, 技術職員 (70614254)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥17,940,000 (Direct Cost: ¥13,800,000、Indirect Cost: ¥4,140,000)
Fiscal Year 2015: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2014: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2013: ¥10,920,000 (Direct Cost: ¥8,400,000、Indirect Cost: ¥2,520,000)
Keywords葉緑体 / ミトコンドリア / オルガネラ分化 / DNA分解 / 葉老化 / ステイグリーン / ヌクレアーゼ / 老化
Outline of Final Research Achievements

Chloroplasts and mitochondria are the organelles that originate from endosymbiosis of respective ancestral bacteria and retain their own DNA as a remnant. Although these organelle DNAs are very limited as genetic content, they exist as multi-copy and vary in the amount. Moreover, tissue-specific degradation of organelle DNAs has been reported in literature since two decades ago but little is understood at the molecular level. Recently, our group identified DPD1 exonuclease, which is conserved in land plants, be dual targeted to plastids and mitochondria, and appear to degrade organelle DNA.
In this study, we attempted to corroborate the role of DPD1 in organelle DNA degradation. We focused on leaf senescence and examine the possibility that organelle DNA degradation is related to nutrient salvage.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (18 results)

All 2016 2015 2014 2013

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Acknowledgement Compliant: 2 results) Presentation (12 results) (of which Int'l Joint Research: 2 results,  Invited: 5 results) Book (1 results)

  • [Journal Article] D1 fragmentation in photosystem II repair caused by photo-damage of a two-step model2015

    • Author(s)
      Yusuke Kato, Shin-ichiro Ozawa, Yuichiro Takahashi, Wataru Sakamoto
    • Journal Title

      Photosynthesis Res

      Volume: in press Issue: 2-3 Pages: 409-416

    • DOI

      10.1007/s11120-015-0144-7

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Possible function of VIPP1 in maintaining chloroplast membranes2015

    • Author(s)
      Zhang, L. and Sakamoto, W
    • Journal Title

      Biochim. Biophys. Acta (BBA) - Bioenergetics

      Volume: --- Issue: 9 Pages: 831-837

    • DOI

      10.1016/j.bbabio.2015.02.013

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] A mutation in GIANT CHLOROPLAST encoding a PARC6 homologue affects spikelet fertility in rice2015

    • Author(s)
      Kamau, P., Sano, S., Takami, T., Matsushima, R., Maekawa, M., and Sakamoto, W.
    • Journal Title

      Plant and Cell Physiology

      Volume: 56 Issue: 5 Pages: 977-991

    • DOI

      10.1093/pcp/pcv024

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Plastid proteases2014

    • Author(s)
      Adam, Z. and Sakamoto, W.
    • Journal Title

      Advances in Plant Biology

      Volume: 5 Pages: 359-389

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nucleases in higher plants and their possible involvement in DNA degradation during leaf senescence2014

    • Author(s)
      Wataru Sakamoto and Tsuneaki Takami
    • Journal Title

      Jouranal of Experimental Botany

      Volume: 65 Issue: 14 Pages: 3835-3843

    • DOI

      10.1093/jxb/eru091

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] オルガネラヌクレアーゼDPD1の欠損は成長に影響する2016

    • Author(s)
      高見常明、坂本亘
    • Organizer
      第57回日本植物生理学会年会
    • Place of Presentation
      盛岡
    • Year and Date
      2016-03-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] 老化葉で発現するヌクレアーゼDPD1はRNAではなく二本鎖および一本鎖DNAを分解する2016

    • Author(s)
      大西紀和、高見常明、坂本亘
    • Organizer
      第57回日本植物生理学会年会
    • Place of Presentation
      盛岡
    • Year and Date
      2016-03-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] Regulation of chloroplast DNA levels and gene expression by organelle nuclease DPD1: influence on leaf longevity and photosynthesis2015

    • Author(s)
      Wataru Sakamoto and Tsuneaki Takami
    • Organizer
      Yamada Conference International Symposium on Dynamics and Regulation of Photosynthesis
    • Place of Presentation
      Nara, Japan
    • Year and Date
      2015-10-29
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 葉の老化過程において葉緑体DNA分解は光合成能低下に影響する2015

    • Author(s)
      高見常明、坂本亘
    • Organizer
      第6回日本光合成学会年会
    • Place of Presentation
      岡山
    • Year and Date
      2015-05-22
    • Related Report
      2015 Annual Research Report
  • [Presentation] Regulation of organelle DNA levels and gene expression by organelle nuclease DPD12015

    • Author(s)
      Wataru Sakamoto and Tsuneaki Takami
    • Organizer
      9th International Conference for Plant Mitochondrial Biology
    • Place of Presentation
      Wroclaw, Poland
    • Year and Date
      2015-05-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] オルガネラDNAを組織特異的に分解するDPD1ヌクレアーゼを欠損したdpd1変異体の光合成活性2015

    • Author(s)
      高見常明、坂本 亘
    • Organizer
      第56回日本植物生理学会年会
    • Place of Presentation
      東京
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Regulation of chloroplast DNA levels and gene expression by organelle nuclease DPD1 Gordon Conference on Chloroplast Biotechnology2015

    • Author(s)
      Sakamoto, W. and Takami, T.
    • Organizer
      Gordon Research Conference on Chloroplast Biotechnology
    • Place of Presentation
      California, USA
    • Year and Date
      2015-01-19 – 2015-01-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] 被子植物のオルガネラゲノムは組織特異的に分解される2014

    • Author(s)
      坂本 亘
    • Organizer
      国立遺伝学研究所研究集会 ~オルガネラゲノムに支配される生命現象~
    • Place of Presentation
      三島
    • Year and Date
      2014-11-07
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 葉緑体ゲノムの母性遺伝と組織特異的ゲノム分解:植物の多様な生存適応戦略2014

    • Author(s)
      坂本 亘
    • Organizer
      大阪市立大学理学部セミナー
    • Place of Presentation
      堺
    • Year and Date
      2014-10-23
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] DPD1の機能欠損は老化葉の葉緑体遺伝子発現に影響する2014

    • Author(s)
      高見常明, 村上華穂, 坂本亘
    • Organizer
      第55回日本植物生理学会
    • Place of Presentation
      富山
    • Related Report
      2013 Annual Research Report
  • [Presentation] オルガネラヌクレアーゼDPD1は老化葉において葉緑体DNA分解に関与する2014

    • Author(s)
      村上華穂, 高見常明, 坂本亘
    • Organizer
      第55回日本植物生理学会
    • Place of Presentation
      富山
    • Related Report
      2013 Annual Research Report
  • [Presentation] Organelle DNA degradation during leaf senescence2013

    • Author(s)
      Wataru Sakamoto
    • Organizer
      6th European Workshop on leaf senescence
    • Place of Presentation
      Versailles, France
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Book] 動植物の受精学2014

    • Author(s)
      坂本 亘
    • Total Pages
      332
    • Publisher
      化学同人
    • Related Report
      2013 Annual Research Report

URL: 

Published: 2013-05-21   Modified: 2019-07-29  

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