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Identification of the strongest candidate genes for heterotic QTL discovered from a gene pool of wild mice

Research Project

Project/Area Number 25292159
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Animal production science
Research InstitutionNagoya University

Principal Investigator

ISHIKAWA Akira  名古屋大学, 生命農学研究科, 准教授 (20211724)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥15,600,000 (Direct Cost: ¥12,000,000、Indirect Cost: ¥3,600,000)
Fiscal Year 2015: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2014: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2013: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
Keywords育種学 / QTL / マウス / 雑種強勢 / 育種 / QTL
Outline of Final Research Achievements

Heterosis, found more than 100 years ago, is a genetic phenomenon essential for animal breeding. However, no causal gene for heterosis has been cloned in animals. Our previous QTL studies using wild mice revealed a small genomic region containing a overdominant QTL for heterosis of body weight. In this study, by an integration approach of phenotypic analysis, exome analysis, and transcriptome analysis using subcongenic mouse strains, I fine-mapped three QTLs for body weight, body length and white fat pad weight to 2.1- to 8.0-Mb genomic regions. Although none of the three QTLs exhibited heterotic effect, several differentially expressed genes were revealed as candidate genes for the body weight and fat weight QTLs.

Report

(4 results)
  • 2016 Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (12 results)

All 2016 2015 2014 2013

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (9 results) (of which Invited: 2 results)

  • [Journal Article] Fine mapping and candidate gene search of quantitative trait loci for growth and obesity using mouse intersubspecific subcongenic intercrosses and exome sequencing2014

    • Author(s)
      Ishikawa, A., and Okuno, S.
    • Journal Title

      PLoS ONE

      Volume: 9 Issue: 11 Pages: e113233-e113233

    • DOI

      10.1371/journal.pone.0113233

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Fine mapping of quantitative trait loci affecting organ weights by mouse intersubspecific subcongenic strain analysis2013

    • Author(s)
      Mollah, Md. B. R. and Ishikawa, A.
    • Journal Title

      Animal Science Journal

      Volume: 印刷中 Issue: 4 Pages: 296-302

    • DOI

      10.1111/asj.12004

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Wild mice as bountiful resources of novel genetic variants for quantitative traits2013

    • Author(s)
      Ishikawa, A.
    • Journal Title

      Current Genomics

      Volume: 14 Pages: 225-229

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] 因果推論テストによるマウス白色脂肪組織重量QTLの候補遺伝子の絞り込み2016

    • Author(s)
      石川 明
    • Organizer
      日本畜産学会第121回大会
    • Place of Presentation
      日本獣医生命科学大学、東京都武蔵野市
    • Year and Date
      2016-03-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] ノックアウトマウスを用いた量的形質遺伝子(QTG)の同定法2015

    • Author(s)
      石川 明
    • Organizer
      名古屋大学動物実験支援センター第1回セミナー
    • Place of Presentation
      名古屋大学動物実験支援センター、名古屋市
    • Year and Date
      2015-09-29
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] トランスクリプトーム解析によるマウス成長関連形質QTLの候補遺伝子の探索2015

    • Author(s)
      石川 明
    • Organizer
      第62回日本実験動物学会総会
    • Place of Presentation
      京都テルサ、京都市
    • Year and Date
      2015-05-28
    • Related Report
      2015 Annual Research Report
  • [Presentation] マウス成長関連形質QTLの候補遺伝子の探索:白色脂肪組織におけるトランスクリプトーム解析2015

    • Author(s)
      石川明
    • Organizer
      日本畜産学会第119回大会
    • Place of Presentation
      宇都宮大学峰キャンパス
    • Year and Date
      2015-03-27 – 2015-03-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] Using Next-generation sequencing to identify candidate genes for QTLs affecting body weight and fat weight in the mouse2014

    • Author(s)
      Ishikawa, A.
    • Organizer
      The 10th World Congress on Genetics Applied to Livestock Production
    • Place of Presentation
      Vancouver, Canada
    • Year and Date
      2014-08-17 – 2014-08-22
    • Related Report
      2014 Annual Research Report
  • [Presentation] ポストQTL解析時代におけるQTG研究の一例2014

    • Author(s)
      石川 明
    • Organizer
      第7回JAB(Japanese Avian Bioresource Project Research Center)特別セミナー
    • Place of Presentation
      広島大学(東広島市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] マウス成長関連形質QTLの候補遺伝子の探索:RT-qPCR解析による肝臓RNA-seq解析結果の確認2014

    • Author(s)
      石川 明
    • Organizer
      日本畜産学会第118回大会
    • Place of Presentation
      つくば国際会議場(つくば市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] マウス第2染色体上の体重・肥満QTLが存在するコンジェニック領域のエクソーム解析2013

    • Author(s)
      石川 明
    • Organizer
      第60回日本実験動物学会総会
    • Place of Presentation
      つくば国際会議場(つくば市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] マウス成長関連形質QTLが存在するコンジェニック領域のエクソーム解析2013

    • Author(s)
      石川 明
    • Organizer
      日本畜産学会第117回大会
    • Place of Presentation
      新潟大学(新潟市)
    • Related Report
      2013 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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