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Behavior of microbial community in the environment polluted by aromatic compound

Research Project

Project/Area Number 25292206
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Environmental agriculture(including landscape science)
Research InstitutionTohoku University

Principal Investigator

Tsuda Masataka  東北大学, 生命科学研究科, 教授 (90172022)

Co-Investigator(Kenkyū-buntansha) KUROKAWA Ken  東京工業大学, 地球生命研究所, 教授 (20343246)
NAGATA Yuji  東北大学, 大学院生命科学研究科, 准教授 (30237531)
OHTSUBO Yoshiyuki  東北大学, 大学院生命科学研究科, 助教 (40342761)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥17,940,000 (Direct Cost: ¥13,800,000、Indirect Cost: ¥4,140,000)
Fiscal Year 2015: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2014: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2013: ¥8,970,000 (Direct Cost: ¥6,900,000、Indirect Cost: ¥2,070,000)
Keywords環境汚染物質分解 / 細菌 / 細菌集団 / メタゲノム / 環境汚染 / 分解酵素遺伝子
Outline of Final Research Achievements

Environmental microbial communities play very important roles in the bioremediation of chemical pollutants. Analysis of a phenanthrene-degrading bacterial consortium in this study showed that such degradation ability of a strain is enhanced by other co-residing and non-degrading strains through two types of mechanisms. Furthermore, transplantation of bacterial community to independent and sterilized environmental samples resulted in very similar time-course changes in the community compositions, indicating the validity of such transplantation to obtain reproducible information on bacterial degradation of chemical pollutants in natural environments.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (81 results)

All 2016 2015 2014 2013

All Journal Article (27 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 27 results,  Open Access: 13 results,  Acknowledgement Compliant: 7 results) Presentation (53 results) (of which Int'l Joint Research: 1 results,  Invited: 7 results) Book (1 results)

  • [Journal Article] H-NS Facilitates Sequence Diversification of Horizontally Transferred DNAs during Their Integration in Host Chromosomes2016

    • Author(s)
      Higashi K., Tobe T., Kanai A., Uyar E., Ishikawa S., Suzuki Y., Ogasawara N., Kurokawa K., and Oshima T
    • Journal Title

      PLoS genetics

      Volume: 12 Issue: 1 Pages: e1005796-e1005796

    • DOI

      10.1371/journal.pgen.1005796

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Complete genome sequence of a phenanthrene degrader, Mycobacterium sp. strain EPa45 (NBRC 110737), isolated from a phenanthrene-degrading consortium.2015

    • Author(s)
      Kato H, Ogawa N, Ohtsubo Y, Oshima K, Toyoda A, Mori H, Nagata Y, Kurokawa K, Hattori M, Fujiyama A, Tsuda M
    • Journal Title

      Genome Announcements

      Volume: 3 Issue: 4

    • DOI

      10.1128/genomea.00782-15

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] FuncTree: Functional Analysis and Visualization for Large-Scale Omics Data.2015

    • Author(s)
      Uchiyama T, Irie M, Mori H, Kurokawa K, Yamada T.
    • Journal Title

      PLoS One.

      Volume: 10 Issue: 5 Pages: e0126967-e0126967

    • DOI

      10.1371/journal.pone.0126967

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] メタゲノム情報を基盤とした土壌細菌コミュニティの解析2015

    • Author(s)
      加藤広海、小川なつみ、津田雅孝
    • Journal Title

      日本微生物生態学会誌

      Volume: 30 Pages: 57-64

    • NAID

      110009988661

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Bacterial clade with the ribosomal RNA operon on a small plasmid rather than the chromosome2015

    • Author(s)
      Mizue Anda, Yoshiyuki Ohtsubo, Takashi Okubo, Masayuki Sugawara, Yuji Nagata, Masataka Tsuda, Kiwamu Minamisawa, and Hisayuki Mitsui
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: 112(46) Issue: 46 Pages: 14343-14347

    • DOI

      10.1073/pnas.1514326112

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Properties and biotechnological applications of natural and engineered haloalkane dehagoneases2015

    • Author(s)
      Nagata Y, Ohtsubo, Y, Tsuda M
    • Journal Title

      Applied Microbiology and Biotechnology

      Volume: 99 Issue: 23 Pages: 9865-9881

    • DOI

      10.1007/s00253-015-6954-x

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance.2015

    • Author(s)
      Kato H, Mori H, Maruyama F, Toyoda A, Oshima K, Endo R, Fuchu G, Miyakoshi M, Dozono A, Ohtsubo Y, Nagata Y, Hattori M, Fujiyama A, Kurokawa K, Tsuda M
    • Journal Title

      DNA Research

      Volume: 22 Issue: 6 Pages: 413-424

    • DOI

      10.1093/dnares/dsv023

    • NAID

      120005850199

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Complete genome sequence of a phenanthrene degrader Burkholderia sp. HB-1 (NBRC:110738)2015

    • Author(s)
      Ohtsubo Y, Moriya A, Kato H, Ogawa N, Nagata Y, Tsuda M
    • Journal Title

      Genome Announcements

      Volume: 3 Issue: 6

    • DOI

      10.1128/genomea.01283-15

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Isolation of oxygenase genes for indigo-forming activity from an artificially polluted soil metagenome by functional screening using Pseudomonas putida strains as hosts2015

    • Author(s)
      Hifofumi Nagayama, Tomonori Sugawara, Ryo Endo, Akira Ono, Hiromi Kato, Yoshiyuki Ohtsubo, Yuji Nagata, and Masataka Tsuda
    • Journal Title

      Applied Microbiology and Biotechnology

      Volume: in press Issue: 10 Pages: 4453-4470

    • DOI

      10.1007/s00253-014-6322-2

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence2015

    • Author(s)
      Kojima H, Ogura Y, Yamamoto N, Togashi T, Mori H, Watanabe T, Nemoto F, Kurokawa K, Hayashi T, Fukui M.
    • Journal Title

      ISME Journal

      Volume: in press Issue: 5 Pages: 1166-1176

    • DOI

      10.1038/ismej.2014.209

    • NAID

      120005667717

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] CLAST: CUDA implemented large-scale alignment search tool.2014

    • Author(s)
      Yano M, Mori H, Akiyama Y, Yamada T, Kurokawa K
    • Journal Title

      BMC Bioinformatics

      Volume: 15 Issue: 1 Pages: 406-406

    • DOI

      10.1186/s12859-014-0406-y

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of Burkholderia multivorans ATCC 17616 genetic determinants for fitness in soil by using signature-tagged mutagenesis2014

    • Author(s)
      Yuji Nagata, Junko Senbongi, Yoko Ishibashi, Rie Sudo, Masatoshi Miyakoshi, Yoshiyuki, Ohtsubo, Masataka Tsuda
    • Journal Title

      Microbiology

      Volume: 160 Pages: 883-891

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation.2014

    • Author(s)
      Hori, Koichi, et al.
    • Journal Title

      Nature communications

      Volume: 5 Issue: 1 Pages: 1-9

    • DOI

      10.1038/ncomms4978

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Stepwise enhancement of catalytic performance of haloalkane dehalogenase LinB towards β-hexachlorocyclohexane2014

    • Author(s)
      Ryota Moriuchi, Hiroki Tanaka, Yuki Nikawadori, Mayuko Ishitsuka, Michihiro Ito, Yoshiyuki Ohtsubo, Masataka Tsuda, Jiri Damborsky, Zbynek Prokop, and Yuji Nagata
    • Journal Title

      AMB Express

      Volume: 4 Issue: 1 Pages: 72-72

    • DOI

      10.1186/s13568-014-0072-5

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] γ-hexachlorocyclohexane-degrading bacteria2014

    • Author(s)
      Yuji Nagata
    • Journal Title

      Biodegradative Bacteria: How Bacteria Degrade, Survive, Adapt, and Evolve

      Volume: Chapter 2 Pages: 19-41

    • DOI

      10.1007/978-4-431-54520-0_2

    • ISBN
      9784431545194, 9784431545200
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mobile catabolic genetic elements in pseudomonads2014

    • Author(s)
      Masataka Tsuda
    • Journal Title

      Biodegradative Bacteria: How Bacteria Degrade, Survive, Adapt, and Evolve

      Volume: Chapter 5 Pages: 83-103

    • DOI

      10.1007/978-4-431-54520-0_5

    • ISBN
      9784431545194, 9784431545200
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Complete genome sequence of Pseudomonas aeruginosa MTB-1 isolated from a microbial community enriched by the technical formulation of hexachlorocyclohexane.2014

    • Author(s)
      Ohtsubo, Y., T. Sato, K. Kishida, M. Tabata, Y. Ogura, T. Hayashi, M. Tsuda, and Y. Nagata
    • Journal Title

      Genome Announcements

      Volume: 2 Issue: 1

    • DOI

      10.1128/genomea.01130-13

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Complete genome sequence of the thermophilic PCB degrader Geobacillus sp. JF8 (NBRC 109937)2014

    • Author(s)
      Shintani, M., Y. Ohtsubo, K. Fukuda, A. Hosoyama, S. Ohji, A. Yamazoe, N. Fujita, Y. Nagata, M. Tsuda, T. Hatta, and K. Kimbara
    • Journal Title

      Genome Announcements

      Volume: 2 Issue: 1

    • DOI

      10.1128/genomea.01213-13

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Complete Genome Sequence of Pseudomonas sp. Strain TKP, Isolated from a gamma-Hexachlorocyclohexane-Degrading Mixed Culture2014

    • Author(s)
      Ohtsubo Y, Kishida K, Sato T, Tabata M, Kawasumi T, Ogura Y, Hayashi T, Tsuda M, Nagata Y
    • Journal Title

      Genome announcements

      Volume: 2 Issue: 1

    • DOI

      10.1128/genomea.01241-13

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of Burkholderia multivorans ATCC 17616 genetic determinants for fitness in soil by using signature-tagged mutagenesis. Microbiology2014

    • Author(s)
      Nagata, Y., J. Senbongi, Y. Ishibashi, R. Sudo, M. Miyakoshi, Y. Ohtsubo, and M. Tsuda
    • Journal Title

      Microbiology

      Volume: in press Issue: 5 Pages: 883-891

    • DOI

      10.1099/mic.0.077057-0

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes2013

    • Author(s)
      Mori H, Maruyama F, Kato H, Toyoda A, Dozono A, Ohtsubo Y, Nagata Y, Fujiyama A, Tsuda M Kurokawa K
    • Journal Title

      DNA Res

      Volume: 21 Issue: 2 Pages: 217-227

    • DOI

      10.1093/dnares/dst052

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] ヒトメタゲノムの大規模コホート研究2013

    • Author(s)
      森宙史
    • Journal Title

      遺伝

      Volume: 67 Pages: 279-282

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Whole-genome sequence of the purple photosynthetic bacterium Rhodovulum sulfidophilum strainW42013

    • Author(s)
      Masuda M, Hori K, Maruyama F, Ren S, Sugimoto S, Yamamoto N, Mori H, Yamada T, Sato S, Tabata S, Ohta H, Kurokawa K
    • Journal Title

      Genome Announc

      Volume: 1(4) Issue: 4

    • DOI

      10.1128/genomea.00577-13

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Inhibitory effect of Pseudomonas putida nitrogen-related phosphotransferase system on conjugative transfer of IncP-9 plasmid from Escherichia coli2013

    • Author(s)
      Inoue K, Miyazaki R, Ohtsubo Y, Nagata Y, Tsuda M
    • Journal Title

      FEMS microbiology letters

      Volume: 345 Issue: 2 Pages: 102-109

    • DOI

      10.1111/1574-6968.12188

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 機能相補による芳香族化合物複合汚染土壌からの新規分解酵素遺伝子の探索2013

    • Author(s)
      永山浩史
    • Journal Title

      Journal of Environmental Biotechnology

      Volume: 13

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Complete Genome Sequence of Ralstonia pickettii DTP0602, a 2,4,6-Trichlorophenol Degrader2013

    • Author(s)
      Ohtsubo Y, Fujita N, Nagata Y, Tsuda M, Iwasaki T, Hatta T.
    • Journal Title

      Genome Announcements

      Volume: 1 Issue: 6

    • DOI

      10.1128/genomea.00903-13

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Strategies to reveal genomic function in natural soil systems2013

    • Author(s)
      Yoshiyuki Ohtsubo
    • Journal Title

      Biodegradative Bacteria: How Bacteria Degrade, Survive, Adapt, and Evolve

      Volume: Chapter 14 Pages: 279-291

    • DOI

      10.1007/978-4-431-54520-0_14

    • ISBN
      9784431545194, 9784431545200
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] 土壌微生物のノトバイオロジー2016

    • Author(s)
      加藤広海、森宙史、永山浩史、大坪嘉行、永田裕二、黒川顕、津田雅孝
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌
    • Year and Date
      2016-03-27
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] フェナントレン分解コンソーシアムに存在する非分解菌の分解菌に対する効果2016

    • Author(s)
      小川なつみ、加藤広海、大坪嘉行、永田裕二、津田雅孝
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌
    • Year and Date
      2016-03-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] フェナントレン分解コンソーシアムMixEPa4における構成細菌間の相互作用2016

    • Author(s)
      守屋梓、小川なつみ、加藤広海、大坪嘉行、永田裕二、津田雅孝
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌
    • Year and Date
      2016-03-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivoransにおけるFur制御下の機能未知遺伝子hemPの解析2016

    • Author(s)
      佐藤拓哉、湯原悟志、大坪嘉行、永田裕二、津田雅孝
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌
    • Year and Date
      2016-03-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] Burkholderia multivoransにおける鉄硫黄クラスター合成系遺伝子群の転写制御機構の解析2016

    • Author(s)
      野々山翔太、佐藤拓哉、岸田康平、大坪嘉行、永田裕二、津田雅孝
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌
    • Year and Date
      2016-03-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] DNA配列表示ツールSeqView2016

    • Author(s)
      大坪嘉行、永田裕二、津田雅孝
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌
    • Year and Date
      2016-03-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] 環境試料RNAの大量シーケンシングと経時解析による有用遺伝子の大規模検索2016

    • Author(s)
      中村祐哉、森宙史、黒川顕、中島信孝
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌
    • Year and Date
      2016-03-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] 土壌細菌叢変動とレジームシフト2016

    • Author(s)
      大坪嘉行、加藤広海、永田裕二、津田雅孝
    • Organizer
      第89回日本細菌学会総会
    • Place of Presentation
      大阪
    • Year and Date
      2016-03-23
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 汚染土壌細菌叢の新規環境への定着及び再汚染のメタゲノム解析2016

    • Author(s)
      加藤広海、森宙史、渡来直生、永山浩史、大坪嘉行、永田裕二、豊田敦、黒川顕、津田雅孝
    • Organizer
      第10回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2016-03-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] フェナントレン分解細菌Burkholderia sp.HB-1株のゲノムと芳香属分解遺伝子の解析2016

    • Author(s)
      守屋梓、小川なつみ、加藤広海、大坪嘉行、永田裕二、津田雅孝
    • Organizer
      第10回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2016-03-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] 遺伝学的解析を用いた芳香族化合物分解コンソーシアムにおける分解菌と非分解菌の共在機構の解明2016

    • Author(s)
      小川なつみ、加藤広海、大坪嘉行、永田裕二、津田雅孝
    • Organizer
      第10回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2016-03-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] 微生物群集動態の原理解明に向けた再現モデルの構築2016

    • Author(s)
      渡来直生、森宙史、加藤広海、大坪嘉行、小椋義俊、永田裕二、豊田敦、藤山秋佐夫、林哲也、津田雅孝、黒川顕
    • Organizer
      第10回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2016-03-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] ナフタレン分解プラスミドNAH7の接合伝達関連機能未知遺伝子群traDEFの解析2016

    • Author(s)
      岸田康平、井上慧、大坪嘉行、永田裕二、津田雅孝
    • Organizer
      第10回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2016-03-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] 次世代シーケンサーを用いたqTnSeq法の構築2016

    • Author(s)
      阿部史歩、大坪嘉行、永田裕二、津田雅孝
    • Organizer
      第10回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2016-03-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] 微生物統合データベー MicrobeDB.jpの検索システムの高度化と新解析パイプライン2016

    • Author(s)
      森宙史、藤澤貴智、千葉啓和、山本希、内山郁夫、菅原秀明、中村保一、黒川顕、MicrobeDB.jpプロジェクトチーム
    • Organizer
      第10回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2016-03-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] 大規模オミックスデータの可視化・解析ツール「FuncTree」の開発2016

    • Author(s)
      山手雄太、森宙史、黒川顕、山田拓司
    • Organizer
      第10回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2016-03-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] 微生物統合データベースを高度化する微生物環境オントロジーと解析アプリケーションの開発2016

    • Author(s)
      鈴木真也、山本希、森宙史、黒川顕
    • Organizer
      第10回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2016-03-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] Haloalkane dehalogenases in bacteria2015

    • Author(s)
      Yuji Nagata, Ryota Moriuchi, Yoshiyuki Ohtsubo, and Masataka Tsuda
    • Organizer
      The International Chemical Congress of Pacific Basin Societies
    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 環境を汚染する難分解性農薬分解遺伝子群の水平伝播2015

    • Author(s)
      永田裕二、大坪嘉行、津田雅孝
    • Organizer
      第30回日本微生物生態学会年次大会
    • Place of Presentation
      土浦
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] メタゲノム情報を基盤とした汚染土壌の細菌コンソーシアムの研究2015

    • Author(s)
      加藤広海、小川なつみ、大坪嘉行、永田裕二、津田雅孝
    • Organizer
      第30回日本微生物生態学会年次大会
    • Place of Presentation
      土浦
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] リボソームRNA遺伝子の染色体外への移行2015

    • Author(s)
      按田瑞恵、大坪嘉行、大久保卓、菅原雅之、永田裕二、津田雅孝、南澤究、三井久幸
    • Organizer
      日本遺伝学会第87回大会
    • Place of Presentation
      仙台
    • Year and Date
      2015-09-24
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] ナフタレン分解プラスミドNAH7の接合伝達宿主域に関する研究2015

    • Author(s)
      岸田康平, 大坪嘉行, 永田裕二, 津田雅孝
    • Organizer
      日本農芸化学会2015年大会
    • Place of Presentation
      岡山
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Response of microbial community to chemical pollutants2015

    • Author(s)
      Masataka Tsuda
    • Organizer
      International Symposium of Research Center for Thermo-tolerant Microbial Resources, Yamaguchi University
    • Place of Presentation
      Yamaguchi
    • Year and Date
      2015-03-09
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 複数の芳香族化合物による人工的汚染化土壌メタゲノムから取得したインディゴ生成活性を担うコスミドクローンの解析2015

    • Author(s)
      永山浩史、加藤広海、菅原智詞、遠藤諒、大坪嘉行、永田裕二、津田雅孝
    • Organizer
      第9回日本ゲノム微生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-03-06 – 2015-03-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] 細菌群集構造可視化ツール「VITCOMIC2」2015

    • Author(s)
      森宙史、丸山貴之、矢野雅大、山田拓司、黒川 顕
    • Organizer
      第9回日本ゲノム微生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-03-06 – 2015-03-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] 微生物統合データベースの超高度化推進のための微生物の生息環境オントロジーと 解析アプリケーションの開発2015

    • Author(s)
      鈴木真也、山本希、森宙史、黒川顕
    • Organizer
      第9回日本ゲノム微生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-03-06 – 2015-03-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] 芳香族化合物分解コンソーシアムに存在する分解菌と非分解菌の関係2015

    • Author(s)
      小川なつみ、加藤広海、大坪嘉行、永田裕二、津田雅孝
    • Organizer
      第9回日本ゲノム微生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-03-06 – 2015-03-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivorans ATCC17616株におけるFurの機能及び発現制御機構の解析2015

    • Author(s)
      佐藤拓哉、木村明音、湯原悟志、大坪嘉行、永田裕二、津田雅孝
    • Organizer
      第9回日本ゲノム微生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-03-06 – 2015-03-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] 次世代シーケンサー由来のリード処理ツール: ShortReadManager2015

    • Author(s)
      大坪嘉行、永田裕二、津田雅孝
    • Organizer
      第9回日本ゲノム微生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-03-06 – 2015-03-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] 移植された土壌微生物の定着過程とその安定性について2015

    • Author(s)
      加藤広海、森宙史、丸山史人、永山浩史、大坪嘉行、永田裕二、黒川顕、津田雅孝
    • Organizer
      第9回日本ゲノム微生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-03-06 – 2015-03-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] rRNA遺伝子オペロンが9-10 kbレプリコンのみに存在するゲノム構造をもつ細菌の系統分布2015

    • Author(s)
      按田瑞恵、大坪嘉行、三井久幸、大久保卓、菅原雅之、永田裕二、津田雅孝、南澤究
    • Organizer
      第9回日本ゲノム微生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-03-06 – 2015-03-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] Transplantation of soil microbiota: establishment process of microbial community in sterilized soil2015

    • Author(s)
      Masataka Tsuda, Hiromi Kato, Hiroshi Mori, Fumito Maruyama, Atsushi Toyoda, Yoshitoshi Ogura, Tetsuya Hayashi, Asao Fujiyama, Ken Kurokawa
    • Organizer
      International Symposium on Genome Science 2015 "Expanding Frontiers of Genome Science II"
    • Place of Presentation
      Tokyo
    • Year and Date
      2015-01-20 – 2015-01-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] VITCOMIC2 analysis system: visualization tool for taxonomic composition of microbial communities2015

    • Author(s)
      Hiroshi Mori, Takayuki Maruyama, Masahiro Yano, Takuji Yamada, Ken Kurokawa
    • Organizer
      International Symposium on Genome Science 2015 "Expanding Frontiers of Genome Science II"
    • Place of Presentation
      Tokyo
    • Year and Date
      2015-01-20 – 2015-01-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] Host range of conjugation system encoded by naphthalene-catabolic plasmid NAH7 from Pseudomonas putida2014

    • Author(s)
      Kouhei Kishida, Yoshiyuki Ohtsubo, Yuji Nagata, Masataka Tsuda
    • Organizer
      International Symposium of the International Society for Plasmid Biology Scientific Meeting 2014
    • Place of Presentation
      Palm Cove, Australia
    • Year and Date
      2014-10-27 – 2014-11-01
    • Related Report
      2014 Annual Research Report
  • [Presentation] 微生物統合データベース「MicrobeDB.jp」2014

    • Author(s)
      森宙史、藤澤貴智、千葉啓、山本希、鈴木真也、菅原秀明、内山郁夫、中村保一、黒川顕
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      浜松
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] フェナントレン分解細菌と共存する非分解優占種細菌の機能解明2014

    • Author(s)
      小川なつみ、加藤広海、大坪嘉行、永田裕二、津田雅孝
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      浜松
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] 土壌における微生物コミュニティの形成過程について2014

    • Author(s)
      加藤広海、森宙史、丸山史人、永山浩史、大坪嘉行、永田裕二、黒川顕、津田雅孝
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      浜松
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] 土壌細菌での鉄応答制御因子Furを介した転写調節機構の解明2014

    • Author(s)
      佐藤拓哉、湯原悟志、大坪嘉行、永田裕二、津田雅孝
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      浜松
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] 芳香族化合物複合汚染土壌から培養非依存的手法で取得したインディゴ生成活性に関与するコスミドクローンの解析2014

    • Author(s)
      永山浩史、菅原智詞、遠藤諒、加藤広海、大坪嘉行、永田裕二、津田雅孝
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      浜松
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] Comparison of complete genome sequences of four gamma-hexachlorocyclohexane-degrading sphingomonad strains2014

    • Author(s)
      Yuji Nagata, Michiro Tabata, Satoshi Ohhata, Yuki Nikawadori, Yoshiyuki Ohtsubo, Masataka Tsuda
    • Organizer
      15th International Symposium on Microbial Ecology
    • Place of Presentation
      Seoul, South Korea
    • Year and Date
      2014-08-24 – 2014-08-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Comparison of phenotypic and transcriptomic responses to harboring plasmids between three different plasmids2014

    • Author(s)
      Y. Takahashi D. Sugiyama1, M. Shintani, H. Yamane, K. Okada, M. Tsuda, H. Nojiri
    • Organizer
      American Society for Microbiology 114th General Meeting
    • Place of Presentation
      Boston, USA
    • Year and Date
      2014-05-17 – 2014-05-20
    • Related Report
      2014 Annual Research Report
  • [Presentation] Mycobacterium属細菌のフェナントレン分解能に対する非分解菌の効果2014

    • Author(s)
      小川なつみ
    • Organizer
      第8回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] 土壌微生物の移植メタゲノム2014

    • Author(s)
      加藤広海
    • Organizer
      第8回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
  • [Presentation] フェナントレン分解コンソーシアムにおける非分解優占種細菌の役割2014

    • Author(s)
      小川なつみ
    • Organizer
      日本農芸化学会2014年大会
    • Place of Presentation
      川崎
    • Related Report
      2013 Annual Research Report
  • [Presentation] 芳香族化合物汚染化土壌メタゲノムから培養非依存的手法により取得したフェノール分解関与遺伝子群の機能解析2014

    • Author(s)
      永山浩史
    • Organizer
      日本農芸化学会2014年大会
    • Place of Presentation
      川崎
    • Related Report
      2013 Annual Research Report
  • [Presentation] 機能発現に基づくメタゲノムライブラリーからの新規芳香族化合物分解酵素遺伝子の取得と解析2013

    • Author(s)
      永山浩史
    • Organizer
      環境バイオテクノロジー学会2013年度大会
    • Place of Presentation
      北九州
    • Related Report
      2013 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivorans ATCC 17616株の鉄恒常性維持機構の解明2013

    • Author(s)
      岸田康平
    • Organizer
      環境バイオテクノロジー学会2013年度大会
    • Place of Presentation
      北九州
    • Related Report
      2013 Annual Research Report
  • [Presentation] Burkholderia multivorans ATCC17616株の芳香族化合物トランスポーター様遺伝子群の解析2013

    • Author(s)
      小川直人
    • Organizer
      日本土壌肥料学会2013年度大会
    • Place of Presentation
      名古屋
    • Related Report
      2013 Annual Research Report
  • [Presentation] 微生物統合データベース「MicrobeDB.jp」2013

    • Author(s)
      黒川顕
    • Organizer
      科学技術振興機構 バイオサイエンスデータベースセンターシンポジウム「トーゴーの日シンポジウム2013 -ここまできたライフサイエンスデータベースの統合-」
    • Place of Presentation
      東京
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] プラスミドを保持した細菌の応答のプラスミド間比較2013

    • Author(s)
      高橋裕里香
    • Organizer
      第14回極限環境生物学会
    • Place of Presentation
      川崎
    • Related Report
      2013 Annual Research Report
  • [Presentation] 土壌微生物の他土壌への移植メタゲノミクス2013

    • Author(s)
      加藤広海
    • Organizer
      第29回日本微生物生態学会年次大会
    • Place of Presentation
      鹿児島
    • Related Report
      2013 Annual Research Report
  • [Presentation] Isolation of phenol-catabolic genes by cultivation-independent functional screening from metagenome of soil artificially polluted by aromatic hydrocarbons2013

    • Author(s)
      Hirofumi Nagayama
    • Organizer
      2nd Thuenen Symposium on Soil Metagenomics
    • Place of Presentation
      Braunschweig, Germany
    • Related Report
      2013 Annual Research Report
  • [Presentation] Design and experimental validation of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes2013

    • Author(s)
      Hiroshi Mori
    • Organizer
      2nd Thuenen Symposium on Soil Metagenomics
    • Place of Presentation
      Braunschweig, Germany
    • Related Report
      2013 Annual Research Report
  • [Book] Biodegradative Bacteria: How Bacteria Degrade, Survive, Adapt, and Evolve2014

    • Author(s)
      Hideaki Nojiri
    • Total Pages
      358
    • Publisher
      Springer Verlag
    • Related Report
      2013 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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