• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

The structure and function of the microbial food chain involved in methane dynamics in the rice rhizosphere

Research Project

Project/Area Number 25292207
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Environmental agriculture(including landscape science)
Research InstitutionNagoya University

Principal Investigator

Murase Jun  名古屋大学, 生命農学研究科, 准教授 (30285241)

Co-Investigator(Kenkyū-buntansha) ASAKAWA Susumu  名古屋大学, 大学院生命農学研究科, 教授 (50335014)
WATANABE Takeshi  名古屋大学, 大学院生命農学研究科, 講師 (60547016)
Research Collaborator ASILOGLU Mohammed Rasit  名古屋大学, 大学院生命農学研究科, 博士課程後期課程
LI Yong  名古屋大学, 大学院生命農学研究科, 博士課程後期課程
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥17,680,000 (Direct Cost: ¥13,600,000、Indirect Cost: ¥4,080,000)
Fiscal Year 2015: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2014: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2013: ¥7,280,000 (Direct Cost: ¥5,600,000、Indirect Cost: ¥1,680,000)
Keywords水稲 / 根圏 / メタン / 原生生物 / 微生物食物連鎖 / 真核微生物 / メタン酸化 / メタン酸化細菌 / 原生動物
Outline of Final Research Achievements

The structure and functions of the microbial food web in the rice rhizosphere, the hot spot of methane dynamics in a rice field ecosystem, were studied. Field surveys and pot and microcosm experiments revealed that the rice rhizosphere was inhabited by the specific members of heterotrophic protists (ciliates, flagellates, and amoeba) showing the community shift to the redox conditions and supply of organic matters in the environment. The structure of the microbial food web in the rice rhizosphere that was driven by methane oxidation was also distinct from that of bulk soil.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (15 results)

All 2015 2014 2013

All Journal Article (5 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 5 results,  Acknowledgement Compliant: 3 results) Presentation (9 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results) Book (1 results)

  • [Journal Article] Methylomagnum ishizawai gen. nov., sp. nov., a mesophilic type I methanotroph isolated from rice rhizosphere2015

    • Author(s)
      Ashraf Khalifa, Chol Gyu Lee, Takuya Ogiso, Chihoko Ueno, Dayeri Dianou, Toyoko Demachi, Arata Katayama, Susumu Asakawa
    • Journal Title

      Int. J. Syst. Evol. Microbiol.

      Volume: 61 Issue: Pt_10 Pages: 3527-3534

    • DOI

      10.1099/ijsem.0.000451

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Community structure of microeukariotes in a rice rhizosphere revealed by DNA-based PCR-DGGE2015

    • Author(s)
      Rasit Asiloglu, Hiroki Honjo, Norikuni Saka, Susumu Asakawa, Jun Murase
    • Journal Title

      Soil Sci. Plant Nutr.

      Volume: 61 Issue: 5 Pages: 761-768

    • DOI

      10.1080/00380768.2015.1049931

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Impact of long-term fertilizer treatment on the microeukaryotic community structure of a rice field soil.2015

    • Author(s)
      Jun Murase, Azusa Hida, Kaori Ogawa, Toshihiro Nonoyama, Nanako Yoshikawa, Katsuhiko Imai
    • Journal Title

      Soil Biol. Biochem.

      Volume: 80 Pages: 237-243

    • DOI

      10.1016/j.soilbio.2014.10.015

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Abundance and composition of ammonia oxidizers in response to degradation of root cap cells of rice in soil microcosms.2014

    • Author(s)
      Li, Y., Watanabe, T., Murase, J., Asakawa, S., Kimura, M.
    • Journal Title

      Journal of Soils and Sediments

      Volume: 15 Issue: 9 Pages: 237-243

    • DOI

      10.1007/s11368-014-0910-8

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Microeukaryotic Community and Oxygen Response in Rice Field Soil Revealed Using a Combined rRNA-Gene and rRNA-Based Approach2014

    • Author(s)
      Murase J, Takenouchi Y, Iwasaki K, Kimura M.
    • Journal Title

      Microbes and Environments

      Volume: 29 Issue: 1 Pages: 74-81

    • DOI

      10.1264/jsme2.ME13128

    • NAID

      130003390910

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] 水田生態系に生息する新規typeIメタン酸化細菌の分離と同定2015

    • Author(s)
      浅川晋
    • Organizer
      日本微生物生態学会第30回大会
    • Place of Presentation
      土浦
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] Spatial distribution and community structure of soil protists in the rice rhizosphere revealed by a "mini-rhizobox experiment"2015

    • Author(s)
      Rasit Asiloglu , Jun Murase
    • Organizer
      The 7th Japan-Taiwan-Korea (JTK) International Symposium on Microbial Ecology
    • Place of Presentation
      土浦
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] Methane-driven microbial food web in a rice field soil2015

    • Author(s)
      Jun Murase
    • Organizer
      International Synposiumm "From classic to Frontiers: Methanotrophy and Meta-omics"
    • Place of Presentation
      南京
    • Year and Date
      2015-09-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Diversity and ecology of microeukaryotic community in a paddy soil2015

    • Author(s)
      Jun Murase
    • Organizer
      12th International Conference of East and Southeast Asia Federation of Soil Science Society
    • Place of Presentation
      南京
    • Year and Date
      2015-09-18
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 水稲根圏より分離したタイプIメタン酸化細菌Methylomagnum ishizawai gen. nov., sp. nov.2015

    • Author(s)
      カァリファ アシュラフ、李 哲揆、小木曾 拓也、上野 千穂子、ディアノウ ディエリ、出町 豊子、片山 新太、浅川 晋
    • Organizer
      日本農芸化学会2015年度大会
    • Place of Presentation
      岡山大学
    • Year and Date
      2015-03-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 水田土壌の真核微生物群集に及ぼす水ポテンシャルの影響2014

    • Author(s)
      中山裕嗣,村瀬潤
    • Organizer
      日本土壌肥料学会2014年度東京大会
    • Place of Presentation
      東京農工大学
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Assimilation of Plant-derived Carbon by Microeukaryotes in a Rice Field Soil2014

    • Author(s)
      Murase, J. Lee, C.G. Li, Y. Shibata, M. Nakatani, H. Minami, H. Watanabe, T. Asakawa, S. Kimura, M.
    • Organizer
      15th International Symposium on Microbial Ecology
    • Place of Presentation
      ソウル
    • Year and Date
      2014-08-24 – 2014-08-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Microeukaryotic community affected by rice roots in a rice field soil revealed by RNA-based DGGE analysis2013

    • Author(s)
      Rasit M. Asiloglu, Jun Murase
    • Organizer
      日本微生物生態学会
    • Place of Presentation
      鹿児島大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] Assimilation of Plant-derived Carbon by Microeukayotes in Rice Field Soil Revealed Using Stable-Isotope Probing2013

    • Author(s)
      Jun Murase, Chol Gyu Lee, Yong Li , Manami Shibata, Haruka Nakatani, Hisako Minami, Takeshi Watanabe, Susumu Asakawa, Makoto Kimura
    • Organizer
      5th TKJ International Symposium in Microbial Ecology
    • Place of Presentation
      台湾中央大学
    • Related Report
      2013 Annual Research Report
  • [Book] 微生物の群集と機能をつなぐ同位体(環境と微生物の事典)2014

    • Author(s)
      村瀬潤
    • Total Pages
      432
    • Publisher
      朝倉書店
    • Related Report
      2014 Annual Research Report

URL: 

Published: 2013-05-21   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi