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Identification and design of PPR-based Rf protein

Research Project

Project/Area Number 25292219
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Applied molecular and cellular biology
Research InstitutionKyushu University

Principal Investigator

Nakamura Takahiro  九州大学, (連合)農学研究科(研究院), 准教授 (10464398)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥17,680,000 (Direct Cost: ¥13,600,000、Indirect Cost: ¥4,080,000)
Fiscal Year 2015: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2014: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Fiscal Year 2013: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
KeywordsPPR / ゲノム編集 / CMS / 細胞質雄性不稔 / ミトコンドリア / 植物
Outline of Final Research Achievements

Biochemical and in silico analysis was applied to Rf-like PPR proteins those contain various amino acid polymorphism, to identify amino acids that connecting the functionality of Rf proteins. Further, a Rf protein recognizes RNA sequence and the subsequent structural change results in suppression of CMS gene expression of orf125 gene in ogura-CMS radish.
Custom PPR protein was designed forCMS gene suppression The custom, artificial PPR protein displayed expected RNA sequence recognition. This custom PPR technology was applied to develop a molecular tool for suppressing a CMS gene for a CMS rice.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (20 results)

All 2016 2015 2014 2013 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results,  Open Access: 3 results,  Acknowledgement Compliant: 2 results) Presentation (9 results) (of which Invited: 9 results) Remarks (2 results)

  • [Journal Article] Mitochondrial ORF79 levels determine pollen abortion in cytoplasmic male sterile rice.2016

    • Author(s)
      Kazama T, Itabashi E, Fujii S, Nakamura T, Toriyama K.
    • Journal Title

      Plant J.

      Volume: 85 Issue: 6 Pages: 707-16

    • DOI

      10.1111/tpj.13135

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Challenges of EditForce Inc., to go beyond genome editing.2015

    • Author(s)
      Yagi, Y., Shirakwa, M. & Nakamura, T.
    • Journal Title

      Nature

      Volume: 528

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Homologous recombination-independent large gene cassette knock-in in CHO cells using TALEN and MMEJ-directed donor plasmids.2015

    • Author(s)
      Sakuma, T., Takenaga, M., Kawabe, Y., Nakamura, T., Kamihira, M. & Yamamoto, T.
    • Journal Title

      Int. J. Mol. Sci.

      Volume: 16 Issue: 10 Pages: 23849-23866

    • DOI

      10.3390/ijms161023849

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The potential for manipulating RNA with pentatricopeptide repeat proteins2014

    • Author(s)
      Yagi Y, Nakamura T, Small I.
    • Journal Title

      Plant J.

      Volume: 78 Issue: 5 Pages: 772-782

    • DOI

      10.1111/tpj.12687

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Pentatricopeptide repeat motifs in the processing enzyme PRORP1 in Arabidopsis thaliana play a crucial role in recognition of nucleotide bases at TψC loop in precursor tRNAs.2014

    • Author(s)
      Imai T, Nakamura T, Maeda T, Nakayama K, Gao X, Nakashima T, Kakuta Y, Kimura M.
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 450 Issue: 4 Pages: 1541-1546

    • DOI

      10.1016/j.bbrc.2014.07.030

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The potential for manipulating RNA with pentatricopeptide repeat proteins2014

    • Author(s)
      Y. Yagi., N. Nakamura., I. Small
    • Journal Title

      The Plant Journal

      Volume: (in press) Issue: 5 Pages: 870-882

    • DOI

      10.1111/tpj.12377

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Pentatricopeptide repeat proteins involved in plant organellar RNA editing.2013

    • Author(s)
      Y. Yagi., M. Tachikawa., H. Noguchi., S. Satoh., J. Obokata., T. Nakamura
    • Journal Title

      RNA biology

      Volume: 10 Issue: 9 Pages: 1419-1425

    • DOI

      10.4161/rna.24908

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Two DYW subclass PPR proteins are involved in RNA editing of ccmFc and atp9 transcripts in the moss Physcomitrella patens : first complete set of PPR editing factors in plant mitochondria2013

    • Author(s)
      Mizuho Ichinose, Chieko Sugita, Yusuke Yagi, Takahiro Nakamura, Mamoru Sugita
    • Journal Title

      Plant Cell Physiology

      Volume: 54 Issue: 11 Pages: 1907-1916

    • DOI

      10.1093/pcp/pct132

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Heterogeneity of the 5'-end in plant mRNA may be involved in mitochondrial translation2013

    • Author(s)
      T. Kazama., Y. Yagi., K. Toriyama., T. Nakamura
    • Journal Title

      Frontiers in Plant Science

      Volume: 4 Pages: 1-4

    • DOI

      10.3389/fpls.2013.00517

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] PPR Motifs and Their Engineering2015

    • Author(s)
      Takahiro Nakamura
    • Organizer
      Gordon Research Conference "Chloroplast Biotechnology"
    • Place of Presentation
      Ventura, CA
    • Year and Date
      2015-01-18 – 2015-01-23
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] PPR motif as a New RNA/DNA Binding Module for Genome Editing2014

    • Author(s)
      Takahiro Nakamura
    • Organizer
      JAACT2014
    • Place of Presentation
      kitakyushu
    • Year and Date
      2014-11-11 – 2014-11-14
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] PPRタンパク質を用いたゲノム編集技術開発2014

    • Author(s)
      中村崇裕
    • Organizer
      植物ゲノム編集ワークショップ
    • Place of Presentation
      倉敷市
    • Year and Date
      2014-11-04
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] ゲノム編集と植物育種における現状2014

    • Author(s)
      中村崇裕
    • Organizer
      日本作物学会九州支部第91回講演会
    • Place of Presentation
      福岡市
    • Year and Date
      2014-09-20 – 2014-09-21
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] ゲノム編集の新しいDNA/RNA結合モジュール、PPRモチーフ2014

    • Author(s)
      中村崇裕
    • Organizer
      動物細胞工学会シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      2014-06-20
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] PPR motif:オルガネラ研究からRNA/DNA操作ツールの開発へ2014

    • Author(s)
      中村崇裕、八木祐介
    • Organizer
      第55回日本植物生理学会年会
    • Place of Presentation
      富山
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] ゲノム編集の現状、およびPPRを用いた国産技術開発の取組2013

    • Author(s)
      中村崇裕
    • Organizer
      植物バイオテク懇話会
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] DNA・RNA編集の新しい核酸結合モジュール、PPRモチーフ2013

    • Author(s)
      八木祐介、佐久間哲史、山本卓、中村崇裕
    • Organizer
      第3回植物RNA研究ネットワーク
    • Place of Presentation
      札幌
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] モノ作りを支える植物細胞内の小さな工場

    • Author(s)
      中村崇裕
    • Organizer
      農芸化学会主催サイエンスカフェ
    • Place of Presentation
      福岡
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Remarks] 九州大学 農学研究院 植物分子機能学

    • URL

      http://www.agr.kyushu-u.ac.jp/lab/plantmb/index.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 九州大学 農学研究院 植物分子機能学

    • URL

      http://www.agr.kyushu-u.ac.jp/lab/plantmb/index.html

    • Related Report
      2013 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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