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Elucidation of molecular mechanism of function of long noncoding RNAs through methylation signal

Research Project

Project/Area Number 25293073
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field General medical chemistry
Research InstitutionSaitama Medical University

Principal Investigator

KUROKAWA RIKI  埼玉医科大学, 医学部, 教授 (70170107)

Co-Investigator(Kenkyū-buntansha) FUJIMOTO KENTA  埼玉医科大学, 医学部, 助教 (50403580)
Co-Investigator(Renkei-kenkyūsha) MATSUSITA AKIO  埼玉医科大学, 医学部, 客員講師 (50402269)
OGAWA SUMITO  東京大学, 医学部附属病院, 准教授 (20323579)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥17,290,000 (Direct Cost: ¥13,300,000、Indirect Cost: ¥3,990,000)
Fiscal Year 2015: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2014: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2013: ¥8,710,000 (Direct Cost: ¥6,700,000、Indirect Cost: ¥2,010,000)
Keywords酵素 / 遺伝子 / 核酸 / 生体分子 / 発現制御 / メチル化 / 長鎖非コードRNA
Outline of Final Research Achievements

We have demonstrated that the promoter-associated noncoding RNA-D (pncRNA-D) transcribed from a promoter region of the cyclin D1 gene represses its expression through binding of pncRNA-D to RNA-binding protein TLS (Nature 454: 126-130, 2008). TLS is found to target the 5’ end (32-62) of pncRNA-D. At the 3’ end (44-62) of pncRNA-D forms a stem-loop structure, while TLS firmly binds to the straight chain of the 5’ end (32-44) of pncRNA. Moreover, high-osmotic treatment of HeLa cells reduced methylation of the N6-adenosine (m6A) at pncRNA-D, but induced its binding to TLS. Recently, we have been analyzing effect of methylation of TLS on its binding to pncRNA-D. Methylation of long ncRNAs (lncRNAs) might regulate their physiological function presenting another exciting issue of the lncRNA biology.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (24 results)

All 2016 2015 2014 2013 Other

All Journal Article (12 results) (of which Peer Reviewed: 5 results,  Open Access: 2 results) Presentation (6 results) (of which Invited: 3 results) Book (1 results) Remarks (4 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Histone Methylation and STAT-3 Differentially Regulate Interleukin-6-Induced Matrix Metalloproteinase Gene Activation in Rheumatoid Arthritis Synovial Fibroblasts.2016

    • Author(s)
      Araki Y, Tsuzuki Wada T, Aizaki Y, Sato K, Yokota K, Fujimoto K, Kim YT, Oda H, Kurokawa R, Mimura
    • Journal Title

      Arthritis Rheumatol.

      Volume: 68 Issue: 5 Pages: 1111-23

    • DOI

      10.1002/art.39563

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The binding specificity of translocated in liposarcoma/fused in sarcoma with lncRNA transcribed from the promoter region of cyclin D12016

    • Author(s)
      Yoneda, R., Suzuki, S., Mashima, T., Kondo, K., Nagata, T., Katahira, M. and Kurokawa, R.
    • Journal Title

      Cell Biosci.

      Volume: 6(4) Issue: 1 Pages: 1-12

    • DOI

      10.1186/s13578-016-0068-8

    • NAID

      120005763383

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] アミロイド様凝集体は翻訳抑制により配偶子形成を制御していた2016

    • Author(s)
      黒川理樹
    • Journal Title

      実験医学

      Volume: 34 Pages: 69-71

    • Related Report
      2015 Annual Research Report
  • [Journal Article] ポストゲノム時代に同定された転写活性化型lncRNA群―eRNAによる転写活性化のメカニズム2015

    • Author(s)
      米田竜馬、黒川理樹
    • Journal Title

      実験医学 増刊

      Volume: 33 Pages: 3284-3285

    • Related Report
      2015 Annual Research Report
  • [Journal Article] 細胞内の生理的なRNA構造をゲノムワイドで解析する2015

    • Author(s)
      黒川理樹
    • Journal Title

      実験医学

      Volume: 33 Pages: 1757-1759

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Initiation of Transcription Generates Divergence of Long Noncoding RNAs.2015

    • Author(s)
      Kurokawa, R.
    • Journal Title

      Long Noncoding RNAs: Structures and Functions,

      Volume: 5 Pages: 69-91

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 巨大転写因子(MegaTrans)複合体によるエンハンサーの活性化2015

    • Author(s)
      黒川 理樹
    • Journal Title

      実験医学

      Volume: Vol.33 Pages: 54-55

    • Related Report
      2014 Annual Research Report
  • [Journal Article] poly(A)鎖が翻訳効率を上げるのは胚発生初期のみだった2014

    • Author(s)
      黒川 理樹
    • Journal Title

      実験医学

      Volume: Vol.32 Pages: 1751-1753

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Development of a mouse monoclonal antibody for the detection of asymmetric dimethylarginine of Translocated in LipoSarcoma/FUsed in Sarcoma and its application in analyzing methylated TLS.2014

    • Author(s)
      Fujimoto, K., and Kurokawa, R.
    • Journal Title

      Cell & Bioscience

      Volume: 4 Issue: 1 Pages: 77-77

    • DOI

      10.1186/2045-3701-4-77

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Aberrant histone acetylation contributes to elevated interleukin-6 production in rheumatoid arthritis synovial fibroblasts2014

    • Author(s)
      Wada TT, Araki Y, Sato K, Aizaki Y, Yokota K, Kim YT, Oda H, Kurokawa R, Mimura T.
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 444 Issue: 4 Pages: 682-686

    • DOI

      10.1016/j.bbrc.2014.01.195

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RNAがDNAメチル化を制御していた-長鎖非コードRNAの新たな機能2014

    • Author(s)
      黒川 理樹
    • Journal Title

      実験医学

      Volume: Vol.32 Pages: 63-65

    • Related Report
      2013 Annual Research Report
  • [Journal Article] 低温電子顕微鏡と擬似原子モデルが解く転写開始の未解決問題2013

    • Author(s)
      黒川 理樹
    • Journal Title

      実験医学

      Volume: Vol.31 Pages: 1751-1752

    • Related Report
      2013 Annual Research Report
  • [Presentation] 特異的結合タンパク質の解析から長鎖非コードRNAの機能を探索する2015

    • Author(s)
      黒川理樹
    • Organizer
      第38回日本分子生物学会年会ワークショップ「長鎖非コードRNAのフロンティア:生化学、分子生物学、医学からのアプローチ」
    • Place of Presentation
      兵庫県神戸市(神戸国際会議場)
    • Year and Date
      2015-12-02
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Transcriptional regulation by the long non-coding RNA transcribed from cyclin D1 promoter via protein arginine methylation of RNA-biding protein TLS.2014

    • Author(s)
      Fujimoto, K., Suzuki, S., Kurokawa, R.
    • Organizer
      IIAS Research Conference 2014 Chromatin Decoding
    • Place of Presentation
      京都府木津川市(国際高等研究所)
    • Year and Date
      2014-05-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] Long noncoding RNAによる遺伝子発現制御2014

    • Author(s)
      黒川 理樹
    • Organizer
      第51回日本臨床分子医学会学術集会シンポジウム
    • Place of Presentation
      東京都千代田区(東京国際フォーラム)
    • Year and Date
      2014-04-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Mechanism of Transcription of Long Noncoding RNA.2014

    • Author(s)
      Kurokawa, R.
    • Organizer
      Keystone Symposia
    • Place of Presentation
      Santa Fe, New Mexico, USA
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Transcriptional regulation by the long non-coding RNA transcribed from cyclin D1 promoter via protein arginine methylation of nuclear hormone receptor-cofactor TLS.2013

    • Author(s)
      Fujimoto, K., Suzuki, S., and Kurokawa, R.
    • Organizer
      ENDO2013
    • Place of Presentation
      San Francisco, California, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] 長鎖非コードRNA作用の分子機構の解析2013

    • Author(s)
      黒川 理樹
    • Organizer
      第36回日本分子生物学会年会 ワークショップ主催
    • Place of Presentation
      兵庫県神戸市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Book] Long Noncoding RNAs: Structures and Functions In: Kurokawa,R. (eds.)2015

    • Author(s)
      Kurokawa, R.
    • Total Pages
      257
    • Publisher
      Springer-Japan
    • Related Report
      2015 Annual Research Report
  • [Remarks] 埼玉医科大学ゲノム医学研究センター

    • URL

      http://www.saitama-med.ac.jp/genome/

    • Related Report
      2015 Annual Research Report
  • [Remarks] 埼玉医科大学ゲノム医学研究センター遺伝子構造機能部門

    • URL

      http://space.geocities.jp/idensikouzou/index.html

    • Related Report
      2015 Annual Research Report
  • [Remarks] 埼玉医科大学ゲノム医学研究センター

    • URL

      http://www.saitama-med.ac.jp/genome/

    • Related Report
      2013 Annual Research Report
  • [Remarks] 埼玉医科大学ゲノム医学研究センター遺伝子構造機能部門

    • URL

      http://space.geocities.jp/idensikouzou/index.html

    • Related Report
      2013 Annual Research Report
  • [Patent(Industrial Property Rights)] 抗TLSモノクローナル抗体及びその製造方法、ハイブリドーマ及びその製造方法、並びに抗TLSモノクローナル抗体含有組成物2013

    • Inventor(s)
      黒川理樹、藤本健太
    • Industrial Property Rights Holder
      黒川理樹、藤本健太
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2013-099962
    • Filing Date
      2013-05-10
    • Related Report
      2013 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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