Whole genome epigenetic analysis in Kabuki syndrome and model cell line construction
Project/Area Number |
25293084
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Research Category |
Grant-in-Aid for Scientific Research (B)
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Allocation Type | Partial Multi-year Fund |
Section | 一般 |
Research Field |
Human genetics
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Research Institution | Nagasaki University |
Principal Investigator |
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Co-Investigator(Kenkyū-buntansha) |
OTA Toru 北海道医療大学, 個体差健康科学研究所, 准教授 (10223835)
|
Project Period (FY) |
2013-04-01 – 2016-03-31
|
Project Status |
Completed (Fiscal Year 2015)
|
Budget Amount *help |
¥17,290,000 (Direct Cost: ¥13,300,000、Indirect Cost: ¥3,990,000)
Fiscal Year 2015: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2014: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2013: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
|
Keywords | 歌舞伎症候群 / ゲノム編集 / 線維芽細胞 / エピジェネティクス / ヒストンメチル化 / 変異 / エピジェネティック変化 |
Outline of Final Research Achievements |
I tried making KMT2D or KDM6A knockout fibroblast cell line in order to analyze the pathophisiology and histon code in Kabuki syndrome. CRSPER/Cas9 genome editing system was adapted. Genome editing in fibroblast are achieved After the drug selection and picking up colony, but low transfection efficiency in fibroblast is a problem for establishing the stable gene knockout cell line. I have not been able to isolate the KMT2D or KDM6A knockout fibroblast cell line so far. I also tried exome sequencing to identify the novel gene causing Kabuki syndrome in KMT2D/KDM6A mutation negative 12 patients. However, I have not been able to identify the new gene.
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Report
(4 results)
Research Products
(55 results)
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[Journal Article] Germline mutations causing familial lung cancer.2015
Author(s)
Tomoshige K, Matsumoto K, Tsuchiya T, Oikawa M, Miyazaki T, Yamasaki N, Mishima H, Kinoshita A, Kubo T, Fukushima K, Yoshiura K, Nagayasu T.
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Journal Title
Journal of Human Genetics
Volume: 60
Issue: 10
Pages: 597-603
DOI
Related Report
Peer Reviewed
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[Journal Article] Novel compound heterozygous DNA ligase IV mutations in an adolescent with a slowly-progressing radiosensitive-severe combined immunodeficiency2015
Author(s)
Tamura S, Higuchi K, Tamaki M, Inoue C, Awazawa R, Mitsuki N, Nakazawa Y, Mishima H, Takahashi K, Kondo O, Imai K, Morio T, Ohara O,et al
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Journal Title
Clin Immunol
Volume: 160
Issue: 2
Pages: 255-260
DOI
Related Report
Peer Reviewed / Open Access
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[Journal Article] Circulating levels of maternal plasma cell-free miR-21 are associated with maternal body mass index and neonatal birth weight.2015
Author(s)
Miura K, Higashijima A, Hasegawa Y, Abe S, Miura S, Fuchi N, Murakami Y, Kinoshita A, Yoshida A, Kaneuchi M, Yoshiura KI, Masuzaki H.
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Journal Title
Prenatal Diagnosis
Volume: 35
Issue: 5
Pages: 509-511
DOI
Related Report
Peer Reviewed
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[Journal Article] Effect of labor on plasma concentrations and postpartum clearance of cell-free, pregnancy-associated, placenta-specific microRNAs2015
Author(s)
Morisaki S, Miura K, Higashijima A, Abe S, Miura S, Hasegawa Y, Yoshida A, Kaneuchi M, Yoshiura K, Masuzaki H
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Journal Title
Prenat Diagn
Volume: 35
Issue: 1
Pages: 44-50
DOI
Related Report
Peer Reviewed / Acknowledgement Compliant
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[Journal Article] Autosomal recessive cystinuria caused by genome-wide paternal uniparental isodisomy in a patient with Beckwith-Wiedemann syndrome.2014
Author(s)
Ohtsuka Y, Higashimoto K, Sasaki K, Jozaki K, Yoshinaga H, Okamoto N, Takama Y, Kubota A, Nakayama M, Yatsuki H, Nishioka K, Joh K, Mukai T, Yoshiura KI, Soejima H.
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Journal Title
Clin Genet.
Volume: 8
Issue: 3
Pages: 1-1
DOI
Related Report
Peer Reviewed / Open Access
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[Journal Article] Heterozygous mutations in cyclic AMP phosphodiesterase-4D (PDE4D) and protein kinase A (PKA) provide new insights into the molecular pathology of acrodysostosis.2014
Author(s)
Kaname T, Ki CS, Niikawa N, Baillie GS, Day JP, Yamamura KI, Ohta T, Nishimura G, Mastuura N, Kim OH, Sohn YB, Kim HW, Cho SY, Ko AR, Lee JY, Kim HW, Ryu SH, Rhee H, Yang KS, Joo K, Lee J, Kim CH, Cho KH, Kim D, Yanagi K, Naritomi K, Yoshiura KI, Kondoh T, Nii E, Tonoki H, Houslay MD, Jin DK.
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Journal Title
Cellular Signaling
Volume: 26 (11)
Issue: 11
Pages: 2446-2459
DOI
Related Report
Peer Reviewed
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[Journal Article] De novo SOX11 mutations cause Coffin-Siris syndrome2014
Author(s)
Tsurusaki Y, Ohashi H, Phadke S, Koshimizu E, Kou I, Shiina M, Suzuki T, Okamoto N, Imamura S, Yamashita M, Watanabe S, Yoshiura K-i, Kodera H, Miyatake S, Nakashima N, Saitsu H, Ogata K, Ikegawa S, Miyake N, and Matsumoto N.
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Journal Title
Nat Commun
Volume: 5
Issue: 1
Pages: 4011-4011
DOI
Related Report
Peer Reviewed / Open Access / Acknowledgement Compliant
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[Journal Article] Predominantly placenta-expressed mRNAs in maternal plasma as predictive markers for twin-twin transfusion syndrome2014
Author(s)
Miura K, Higashijima A, Miura S, Mishima H, Yamasaki K, Abe S, Hasegawa Y, Kaneuchi M, Yoshida A, Kinoshita A, Yoshiura KI, Masuzaki H.
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Journal Title
Prenatal Diagnosis
Volume: 34
Issue: 4
Pages: 345-349
DOI
Related Report
Peer Reviewed
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[Journal Article] Single human papillomavirus 16 or 52 infection and later cytological findings in Japanese women with NILM or ASC-US.2014
Author(s)
Abe S, Miura K, Kinoshita A, Mishima H, Miura S, Yamasaki K, Hasegawa Y, Higashijima A, Jo O, Yoshida A, Kaneuchi M, Yoshiura K, Masuzaki H.
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Journal Title
Journal of Human Genetics
Volume: 59 (5)
Issue: 5
Pages: 251-255
DOI
Related Report
Peer Reviewed
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[Journal Article] Malfunction of Nuclease ERCC1-XPF Results in Diverse Clinical Manifestations and Causes Cockayne Syndrome, Xeroderma Pigmentosum, and Fanconi Anemia.2013
Author(s)
Kashiyama, K, Nakazawa, Y, Pilz, DT, Guo, C, Sasaki, K, et al.
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Journal Title
The American Journal of Human Genetics
Volume: 92
Issue: 5
Pages: 807-819
DOI
Related Report
Peer Reviewed
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[Journal Article] Copy number variation of the antimicrobial-gene, defensin beta 4, is associated with susceptibility to cervical cancer.2013
Author(s)
Abe, S, Miura, K, Kinoshita, A, Mishima, H, Miura, S, Yamasaki, K, Hasegawa, Y, Higashijima, A, Jo, O, Sasaki, K, Yoshida, A, Yoshiura, KI, Masuzaki.
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Journal Title
Journal of Human Genetics
Volume: 58
Issue: 5
Pages: 250-253
DOI
Related Report
Peer Reviewed
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