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Rare variant analysis of rheumatoid arthritis associated genes.

Research Project

Project/Area Number 25293225
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Collagenous pathology/Allergology
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Kochi Yuta  国立研究開発法人理化学研究所, 統合生命医科学研究センター, 副チームリーダー (60415156)

Co-Investigator(Renkei-kenkyūsha) MYOUZEN Keiko  国立研究開発法人理化学研究所, 統合生命医科学研究センター, リサーチアソシエイ (80462737)
Project Period (FY) 2013-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥17,940,000 (Direct Cost: ¥13,800,000、Indirect Cost: ¥4,140,000)
Fiscal Year 2015: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2014: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2013: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
Keywords関節リウマチ / rare variant / ケースコントロール関連解析 / 次世代シークエンサー
Outline of Final Research Achievements

The aim of this study was to clarify the role of rare variants in the onset of rheumatoid arthritis. To identify rare variants associated with the disease, we sequenced 16 genes in the NF-κB signal pathway. As a result, rare variants were significantly enriched in the NF-κB pathway genes in patients. Through the functional analysis of rare variants in RELA gene by in vitro assays, we demonstrated that most of these variants increased the NF-κB activity in cells. These findings suggested rare variants substantially contributed to the pathogenesis of rheumatoid arthritis.

Report

(5 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (10 results)

All 2017 2016 2015 2014

All Journal Article (8 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 6 results,  Open Access: 2 results) Presentation (2 results) (of which Int'l Joint Research: 1 results,  Invited: 2 results)

  • [Journal Article] olygenic burdens on cell-specific pathways underlie the risk of rheumatoid arthritis2017

    • Author(s)
      Ishigaki K, Kochi Y, and et al.
    • Journal Title

      Nat Genet

      Volume: 印刷中

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 関節リウマチ2016

    • Author(s)
      高地 雄太
    • Journal Title

      Clinical Calcium

      Volume: 26(4) Pages: 55-59

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Genetics of autoimmune diseases: perspectives from genome-wide association studies.2016

    • Author(s)
      Kochi Y
    • Journal Title

      Int Immunol.

      Volume: 28(4) Issue: 4 Pages: 155-161

    • DOI

      10.1093/intimm/dxw002

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High-density genotyping of immune-related loci identifies new SLE risk variants in individuals with Asian ancestry2016

    • Author(s)
      76.Imamura M, Takahashi A, Yamauchi T, Hara K, Yasuda K, ... Okada Y et al.
    • Journal Title

      Nat Genet

      Volume: 48 Issue: 3 Pages: 323-330

    • DOI

      10.1038/ng.3496

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genetics of rheumatoid arthritis in Asia-present and future.2015

    • Author(s)
      Yamamoto K, Okada Y, Suzuki A, Kochi Y.
    • Journal Title

      Nat Rev Rheumatol

      Volume: AOP Issue: 6 Pages: 375-379

    • DOI

      10.1038/nrrheum.2015.7

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic basis of rheumatoid arthritis: a current review.2014

    • Author(s)
      Kochi Y, Suzuki A, Yamamoto K.
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 452 Issue: 2 Pages: 254-262

    • DOI

      10.1016/j.bbrc.2014.07.085

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetics of rheumatoid arthritis contributes to biology and drug discovery.2014

    • Author(s)
      Okada Y, Wu D, Trynka G, Raj T, Terao C, Ikari K, Kochi Y, Ohmura K, Suzuki A, Yoshida S, Graham RR, Manoharan A, Ortmann W, Bhangale T, Denny JC, (省略), GARNET consortium, (以下省略).
    • Journal Title

      Nature

      Volume: 506 Issue: 7488 Pages: 376-381

    • DOI

      10.1038/nature12873

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 関節リウマチの発症要因と発症メカニズム:遺伝要因2014

    • Author(s)
      高地 雄太
    • Journal Title

      日本臨牀

      Volume: 72 Pages: 40-43

    • Related Report
      2013 Annual Research Report
  • [Presentation] GWAS and functional genomics of autoimmune diseases2016

    • Author(s)
      Kochi Y
    • Organizer
      13th International Congress of Human Genetics
    • Place of Presentation
      京都国際会議場
    • Year and Date
      2016-04-05
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Genetics of rheumatoid arthritis: insights from GWAS2014

    • Author(s)
      Kochi Y
    • Organizer
      日本人類遺伝学会
    • Place of Presentation
      東京都・タワーホール船堀
    • Year and Date
      2014-11-21
    • Related Report
      2014 Annual Research Report
    • Invited

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Published: 2013-05-21   Modified: 2019-07-29  

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