• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Finding new biomarker in periodontitis using bioinformatics

Research Project

Project/Area Number 25293424
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Periodontology
Research InstitutionTokyo Medical and Dental University

Principal Investigator

Izumi Yuichi  東京医科歯科大学, 医歯(薬)学総合研究科, 教授 (60159803)

Co-Investigator(Kenkyū-buntansha) KOBAYASHI hiroaki  東京医科歯科大学, 医歯学総合研究科, 非常勤講師 (50396967)
TAKEUCHI yasuo  東京医科歯科大学, 医歯学総合研究科, 助教 (60396968)
NANBARA hiromi  東京医科歯科大学, 医歯学総合研究科, 助教 (00632168)
TANAKA nobuhiro  東京医科歯科大学, 疾患バイオリソースセンター, 教授 (50292850)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥17,680,000 (Direct Cost: ¥13,600,000、Indirect Cost: ¥4,080,000)
Fiscal Year 2015: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2014: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2013: ¥7,670,000 (Direct Cost: ¥5,900,000、Indirect Cost: ¥1,770,000)
Keywordsエクソームシークエンス / 侵襲性歯周炎 / エクソーム解析 / 歯周炎
Outline of Final Research Achievements

Aggressive periodontitis(AgP) is a particularly severe type of periodontitis and diagnosed by three characteristics: rapid bone destruction, possible familial aggregation, and absence of other systemic disorders in the patient. Exome sequencing is increasingly utilized as tools in genetic research and has a potential to determine the genetic cause for both single gene and complex disorders. Of 119 patients who diagnosed as AgP, we found 3-generation consanguineous pedigree in which three of them are affected with AgP. We further performed whole-exome sequencing in those three AgP patients and one control. (Two of them are already sequenced. Lest of two will be sequenced near future.) After getting sequencing data, we plan to analyze them by using a bioinformatics pipeline.48889 and 45564 variants are found respectively, in two patients.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (14 results)

All 2016 2015 2014 2013

All Journal Article (9 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 9 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (5 results)

  • [Journal Article] Salivary pathogen and serum antibody to assess the progression of chronic periodontitis: a 24-mo prospective multicenter cohort study2016

    • Author(s)
      Morozumi T, Nakagawa T, Nomura Y, Sugaya T, Kawanami M, Suzuki F, Takahashi K, Abe Y, Sato S, Makino-Oi A, Saito A, Takano S, Minabe M, Nakayama Y, Ogata Y, Kobayashi H, Izumi Y, Sugano N, …., Yoshimura A, Hara Y, ….
    • Journal Title

      Journal of Periodontal Research

      Volume: 印刷中 Issue: 6 Pages: 768-778

    • DOI

      10.1111/jre.12353

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] A Genome-wide Association Study of Periodontitis in a Japanese Population2015

    • Author(s)
      S. Shimizu, Y. Momozawa, A. Takahashi, T. Nagasawa, K. Ashikawa, Y. Terada, Y. Izumi, H. Kobayashi, M. Tsuji, M. Kubo, and Y. Furuichi
    • Journal Title

      Journal of Dental Research

      Volume: 1 Issue: 4 Pages: 1-7

    • DOI

      10.1177/0022034515570315

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A candidate enhancer element responsible for high-level expression of the aggrecan gene in chondrocytes.2014

    • Author(s)
      Yuichi Ikeda, Kazuo Ito, Yuichi Izumi, Tamayuki Shinomura.
    • Journal Title

      J. Biochem.

      Volume: 156 Issue: 1 Pages: 21-28

    • DOI

      10.1093/jb/mvu014

    • NAID

      40020124391

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Porphyromonas gingivalis promotes neointimal formation after arterial injury through toll-like receptor 2 signaling.2014

    • Author(s)
      Kobayashi N, Suzuki J, Ogawa M, Aoyama N, Komuro I, Izumi Y, Isobe M.
    • Journal Title

      Heart Vessels

      Volume: 29 Issue: 4 Pages: 542-549

    • DOI

      10.1007/s00380-013-0405-3

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Intraindividual variation in core microbiota in peri-implantitis and periodontitis.2014

    • Author(s)
      N. Maruyama, F. Maruyama, Y. Takeuchi, C. Aikawa, Y. Izumi, I. Nakagawa.
    • Journal Title

      Scientific Reports

      Volume: 13 Issue: 1 Pages: 6602-6602

    • DOI

      10.1038/srep06602

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Thrombospondin-1 production is enhanced by Porphyromonas gingivalis lipopolysaccharide in THP-1 cells2014

    • Author(s)
      Gokyu M, Kobayashi H, Nanbara H, Sudo T, Ikeda Y, Suda T, Izumi Y
    • Journal Title

      PLoS One

      Volume: 12 Issue: 12 Pages: 115107-115107

    • DOI

      10.1371/journal.pone.0115107

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Application of quantitative proteomic analysis using tandem mass tags for discovery and identification of novel biomarkers in periodontal disease.2013

    • Author(s)
      Tsuchida S, Satoh M, Kawashima Y, Sogawa K, Kado S, Sawai S, Nishimura M, Ogita M, Takeuchi Y, Kobyashi H, Aoki A, Kodera Y, Matsushita K. Izumi Y. Nomura F
    • Journal Title

      Proteomics

      Volume: Vol.13 Issue: 15 Pages: 2339-2350

    • DOI

      10.1002/pmic.201200510

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An effective technique for the processing of saliva for the analysis of leptin and adiponectin.2013

    • Author(s)
      Thanakun S, Watanabe H, Thaweboon S, Izumi Y
    • Journal Title

      Peptides

      Volume: 47 Pages: 60-65

    • DOI

      10.1016/j.peptides.2013.06.010

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Osteoblastic differentiation enhances expression of TRPV4 that is required for calcium oscillation induced by mechanical force2013

    • Author(s)
      Takafumi Suzuki
    • Journal Title

      Bone

      Volume: 54(1) Issue: 1 Pages: 172-8

    • DOI

      10.1016/j.bone.2013.01.001

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] 大規模並列シークエンサーを用いた侵襲性歯周炎のゲノム解析.2015

    • Author(s)
      須藤毅顕, 岡田随象, 小林宏明, 御給美沙, 田中敏博, 和泉雄一.
    • Organizer
      第143回日本歯科保存学会
    • Place of Presentation
      文教シビックホール(東京都文京区)
    • Year and Date
      2015-11-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] 侵襲性歯周炎の全エクソーム解析による候補遺伝子の同定2015

    • Author(s)
      須藤毅顕, 岡田随象, 小林宏明, 御給美沙, 和泉雄一, 田中敏博.
    • Organizer
      第60回日本人類遺伝学会
    • Place of Presentation
      京王プラザホテル(東京都新宿区)
    • Year and Date
      2015-10-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] Bacterial evaluation in Periodontal-Endodontic lesion.2015

    • Author(s)
      Misa Gokyu, Hiroaki Kobayashi, Nobuyuki Kawashima, Yuichi Ikeda, Hiromi Nanbara, Takeaki Sudo, Tomonari Suda, Yuichi Izumi.
    • Organizer
      The International Association for Dental Research
    • Place of Presentation
      Boston, USA
    • Year and Date
      2015-03-14
    • Related Report
      2014 Annual Research Report
  • [Presentation] Quantitative evaluation for counting bacterial cells using synthesis gene.2014

    • Author(s)
      Misa Gokyu, Yuichi Ikeda, Hiroaki Kobayashi, Yuichi Izumi.
    • Organizer
      The 62nd Annual Meeting of Japanese Association for Dental Research
    • Place of Presentation
      大阪、KKRホテル大阪
    • Year and Date
      2014-12-05
    • Related Report
      2014 Annual Research Report
  • [Presentation] Point of care system for detecting salivary porphyromonas gingivalis.2013

    • Author(s)
      Hiroaki Kobayashi,Miho Machigashira,Reiko Suda,Toshiyuki Nagasawa,Yoshie Tanaka, Toshiaki Yoshino,Matsuo Yamamoto,Kazuyuki Noguchi,Yasushi Furuichi,Yuichi lzumi.
    • Organizer
      10th Asian Pacific Society of Periodontology meeting.
    • Place of Presentation
      Nara Prefectural New Public Hall, Nara, Japan.
    • Related Report
      2013 Annual Research Report

URL: 

Published: 2013-05-21   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi