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Phylogeography and genetic conservation of Ulin ( Eusideroxylon zwageri), a tropical useful tree species.

Research Project

Project/Area Number 25304025
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section海外学術
Research Field Forest science
Research InstitutionThe University of Tokyo

Principal Investigator

IDE Yuji  東京大学, 農学生命科学研究科, 教授 (90213024)

Co-Investigator(Kenkyū-buntansha) SAITO Yoko  東京大学, 大学院農学生命科学研究科, 助教 (00302597)
Research Collaborator KUROKOCHI Hiroyuki  東京大学, アジア生物資源環境研究センター, 助教 (00609000)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2015: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2014: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2013: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Keywords希少樹種 / 核SSR / 葉緑体DNA / 次世代シーケンサー / 遺伝的多様性 / DNA分析 / 希少樹木 / 核DNA / 現地外保全
Outline of Final Research Achievements

In order to prevent the illegal sell of wood and to contribute the establishment of conservation area of Ulin (Eusideroxylon zwageri), which is highly threatened, we conducted the phylogeographic study of this tropical Lauraceae tree species. Sixteen nuclear microsatellite markers are developed and sequencing regions in chloroplast are decided by Next generation sequencer analysis. Totally 310 individuals in 9 populations located in Sumatra Island and Kalimantan Island, Indonesia, are genetically analyzed. The essential information for establishment of the conservation area is obtained, that this species have clear genetic structure and the genetic differentiation among populations. Most of chloroplast haplotypes, being peculiar to each population, are useful for checking of illegal sell of this species.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (8 results)

All 2015 2014 Other

All Int'l Joint Research (1 results) Journal Article (2 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 2 results,  Acknowledgement Compliant: 1 results) Presentation (4 results) Funded Workshop (1 results)

  • [Int'l Joint Research] ムラワルマン大学(インドネシア)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Development of polymorphic chloroplast DNA markers for the endangered tree Eusideroxylon zwageri through chloroplast isolation and next-generation sequencing2015

    • Author(s)
      Hiroyuki Kurokochi, I. L. G. Nurtjahjaningsih, Sukartiningsih, Engkong Tan, Shuichi Asakawa, Yoko Saito, Yuji Ide
    • Journal Title

      Conservation Genet Resour

      Volume: 7 Issue: 4 Pages: 845-850

    • DOI

      10.1007/s12686-015-0485-8

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Development of 16 microsatellite markers in Eusideroxylon zwageri by next-generation sequencing2014

    • Author(s)
      H Kurokochi, E Tan, S Asakawa ,Sukartiningsih, Y Saito and Y Ide
    • Journal Title

      Conservation Genet Resour

      Volume: online Issue: 3 Pages: 593-595

    • DOI

      10.1007/s12686-014-0148-1

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] The meanin of population genetics on conservation of tree species.2015

    • Author(s)
      Yoko Saito
    • Organizer
      International workshop on "Consevation of Borneo Ironwood(Eusideroxylon zwageri Teijsm. and Binn.)": Threat, Genetics and Challenges
    • Place of Presentation
      Indonesia
    • Year and Date
      2015-12-21
    • Related Report
      2015 Annual Research Report
  • [Presentation] Genetic variation and structure of Ulin in Indonesia2015

    • Author(s)
      Ida luh Gede Nurtjajahningsih
    • Organizer
      International workshop on "Consevation of Borneo Ironwood(Eusideroxylon zwageri Teijsm. and Binn.)": Threat, Genetics and Challenges
    • Place of Presentation
      Indonesia
    • Year and Date
      2015-12-21
    • Related Report
      2015 Annual Research Report
  • [Presentation] Marker deveropment using next generation sequencer2015

    • Author(s)
      Hiroyuki Kurokochi
    • Organizer
      International workshop on "Consevation of Borneo Ironwood(Eusideroxylon zwageri Teijsm. and Binn.)": Threat, Genetics and Challenges
    • Place of Presentation
      Indonesia
    • Year and Date
      2015-12-21
    • Related Report
      2015 Annual Research Report
  • [Presentation] Genetic diversity of Eusideroxylon zwageri (Teijsm. & Binn.) in Indonesia revealed by nuclear microsatellite markers2015

    • Author(s)
      Ida Luh Gede Nurtjajah Ninsih・Sukartiningsih・黒河内寛之・齊藤陽子・井出雄二
    • Organizer
      第126回日本森林学会
    • Place of Presentation
      札幌
    • Year and Date
      2015-03-26 – 2015-03-28
    • Related Report
      2014 Annual Research Report
  • [Funded Workshop] "Conservation of Borneo Ironwood"(Eusideroxylon zwageri Teijsm and Binn.):Threat, Genetics and Challenges2015

    • Place of Presentation
      Mulawarman University, Indonesia
    • Year and Date
      2015-12-21
    • Related Report
      2015 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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