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Comparative genome analysis useful for protecting and utilizing NPVs infecting wild silkworms from East to South Asian countries

Research Project

Project/Area Number 25304047
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section海外学術
Research Field Insect science
Research InstitutionYamaguchi University

Principal Investigator

Kobayashi Jun  山口大学, 創成科学研究科, 教授 (70242930)

Co-Investigator(Kenkyū-buntansha) 門野 敬子  国立研究開発法人農業生物資源研究所, 昆虫科学研究領域, ユニット長 (40355722)
Research Collaborator SHIMIZU Osamu  元群馬県蚕糸技術センター
KAJIURA Zenta  信州大学, 繊維学部, 教授
WANG Xueyin  瀋陽農業大学, 教授
HUANG Yuanjiao  広西医科大学, 教授
SUSAMTO Somwiharjo  ガジャマダ大学, 教授
Project Period (FY) 2013-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2016: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2015: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2014: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2013: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Keywords核多角体病ウイルス / 野蚕 / ウイルスゲノム / 昆虫病理 / 昆虫機能利用
Outline of Final Research Achievements

Nucleopolyhedroviruses (NPVs) have been isolated from various saturniid silkmoths (wild silkworms) utilized for silk production from East to South Asian countries, and their whole genome DNA sequences have been analyzed and compared using Next-Generation sequencer. As a result, a mutiplex-PCR diagnostic protocol, which enables to detect each NPV with high sensitivity and specificificity, has been successfully developed and useful knowledge in construction of baculovirus expression vector system with advantageous properties for valuable protein production and in consideration of genetic variation and evolution of NPVs infecting wild silkworms have been obtained.

Report

(5 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (40 results)

All 2017 2016 2015 2014 2013 Other

All Int'l Joint Research (10 results) Journal Article (10 results) (of which Peer Reviewed: 9 results,  Acknowledgement Compliant: 3 results) Presentation (18 results) (of which Int'l Joint Research: 3 results) Book (1 results) Remarks (1 results)

  • [Int'l Joint Research] Kasetsart University(Thailand)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Gadjah Mada University(Indonesia)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Vietnam National Univ. of Agriculture(ベトナム)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Central Silk Board(India)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] 瀋陽農業大学/広西医科大学(中国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Kasetsart University(Thailand)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Gadjah Mada University(Indonesia)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Hanoi University of Agriculture(ベトナム)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Central Silk Board(India)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] 瀋陽農業大学/広西医科大学(中国)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Comparative Analyses of Deletion Mutations and their Pathological Effects of nucleopolyhedroviruses isolated from saturniid wild silkworms2017

    • Author(s)
      K. Sasaki, Z. Kajiura and J. Kobayashi
    • Journal Title

      Journal of Insect Biotechnology and Sericology

      Volume: 86

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 東~南アジアの野蚕核多角体病ウイルスの防除と利用に役立つ比較ゲノム解析2016

    • Author(s)
      佐々木邦・谷崎加奈・小林淳
    • Journal Title

      昆虫と自然

      Volume: 51(9) Pages: 37-38

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Gene expression and localization analysis of Bombyx mori bidensovirus and its putative receptor in B. mori midgut.2016

    • Author(s)
      Ito K, Shimura S, Katsuma S, Tsuda Y, Kobayashi J, Tabunoki H, Yokoyama T, Shimada T, Kadono-Okuda K
    • Journal Title

      J Invertebr Pathol

      Volume: 136 Pages: 50-56

    • DOI

      10.1016/j.jip.2016.03.005

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] rRNA degradation in Bombyx mori and Bombyx mandarina cells infected with heterologous nucleopolyhedroviruses2016

    • Author(s)
      R. Hamajima, C. Yasunaga-Aoki, M. Iwanaga, S. Imanishi, J. Kobayashi, K. Sasaki, T. Kusakabe, J. M. Lee, H. Mon, M. Kobayashi and M. Ikeda
    • Journal Title

      Journal of Insect Biotechnology and Sericology

      Volume: 85 Pages: 73-77

    • NAID

      130005286837

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stable isotope labeling of glycoprotein expressed in silkworms using immunoglobulin G as a test molecule2015

    • Author(s)
      H.Yagi, M.Nakamura, J.Yokoyama, Y.Zhang, T.Yamaguchi, S.Kondo, J.Kobayashi, T.Kato, E.Y.Park, S.Nakazawa, N.Hashii, N.Kawasaki, and K.Kato
    • Journal Title

      J. Biomol. NMR

      Volume: - Issue: 2 Pages: 157-167

    • DOI

      10.1007/s10858-015-9930-y

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Structural determination of an N-glycan moiety attached to the prothoracicotropic hormone from the silkmoth Bombyx mori.2014

    • Author(s)
      Nagata S, Kobayashi J, Kataoka H, Suzuki A.
    • Journal Title

      Biosci, Biotech Biochem

      Volume: 78 Issue: 8 Pages: 1381-1383

    • DOI

      10.1080/09168451.2014.925777

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Characterization of a yam class IV chitinase produced by recombinant Pichia pastoris X-332014

    • Author(s)
      M. A. Akond, Y. Matsuda, T. Ishimaru, K. Iwai, A. Saito, A. Kato, S. Tanaka, J. Kobayashi, and D. Koga
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 78 Issue: 2 Pages: 222-230

    • DOI

      10.1080/09168451.2014.885825

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] バキュロウイルスと昆虫培養細胞の新規利用技術開発2014

    • Author(s)
      小林淳
    • Journal Title

      生化学

      Volume: 86 Pages: 561-569

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Introduction of diapause trait into the Muga silkmoth, Antheraea assamensis: A scientific collaboration over the Hymalayas2014

    • Author(s)
      M. Takeda, J. Kobayashi, M. Kamimura, and P. Jaya Prakash
    • Journal Title

      International Journal of Wild Silkmoth & Silk

      Volume: 18 Pages: 39-54

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Degradation of ribosomal RNA in BM-N cells from the silkworm Bombyx mori during abortive infection with heterologous nucleopolyhedroviruses2013

    • Author(s)
      Hamajima, R., Ito, Y., Ichikawa, H., Mitsutake, H., Kobyashi, J., Kobayashi, M. and Ikeda, M
    • Journal Title

      J. Gen. Virol

      Volume: 94 Issue: 9 Pages: 2102-2111

    • DOI

      10.1099/vir.0.053645-0

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] 全ゲノム配列比較に基づく日本のヤママユガ科野蚕核多角体病ウイルスの系統関係2016

    • Author(s)
      佐々木邦,梶浦善太,小林淳
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県・横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] Comparative whole genome analysis of nucleopolyhedroviruses infecting saturniid silkworms by next-generation sequencing2016

    • Author(s)
      J. Kobayashi, K. Sasaki, Z. Kajiura and K. Kadono-Okuda
    • Organizer
      XXV International Congress of Entomology
    • Place of Presentation
      Orange County Convention Center (Orland, FL, USA)
    • Year and Date
      2016-09-25
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ヤママユガ科野蚕を宿主とする核多角体病ウイルスのゲノム比較2016

    • Author(s)
      佐々木邦,梶浦善太,小林淳
    • Organizer
      第31回中国四国ウイルス研究会
    • Place of Presentation
      鳥取大学(鳥取県・鳥取市)
    • Year and Date
      2016-07-09
    • Related Report
      2016 Annual Research Report
  • [Presentation] テンサン核多角体病ウイルスのコンセンサスゲノムの再検討2016

    • Author(s)
      佐々木邦, 梶浦善太, 小林淳
    • Organizer
      日本蚕糸学会第86回大会
    • Place of Presentation
      京都工芸繊維大学(京都府京都市)
    • Year and Date
      2016-03-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] テンサン由来バキュロウイルス分離株の次世代シーケンサー分析で高頻度に検出された欠陥干渉粒子配列2015

    • Author(s)
      佐々木邦, 梶浦善太, 小林淳
    • Organizer
      第38回日本分子生物学会年会・第88回日本生化学会大会・合同大会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] 東~南アジアの野蚕核多角体病ウイルスのゲノム配列比較2015

    • Author(s)
      谷崎加奈,佐々木邦,梶浦善太,門野敬子,清水治,小林淳
    • Organizer
      日本野蚕学会第21回大会
    • Place of Presentation
      東京農業大学世田谷キャンパス(東京都世田谷区)
    • Year and Date
      2015-11-28
    • Related Report
      2015 Annual Research Report
  • [Presentation] テンサン核多角体病ウイルスの網羅的比較ゲノム解析2015

    • Author(s)
      佐々木邦,梶浦善太,小林淳
    • Organizer
      日本蚕糸学会第85回大会
    • Place of Presentation
      北海道大学農学部(北海道札幌市)
    • Year and Date
      2015-09-26
    • Related Report
      2015 Annual Research Report
  • [Presentation] 次世代シーケンサーを用いたテンサン核多角体病ウイルスのゲノム配列解析(第2報)2015

    • Author(s)
      佐々木邦, 梶浦善太, 小林淳
    • Organizer
      第30回中国四国ウイルス研究会
    • Place of Presentation
      くらしき山陽ハイツ(岡山県倉敷市)
    • Year and Date
      2015-06-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] Development of new technologies for utilizing baculoviruses and insect cell lines2015

    • Author(s)
      Jun Kobayashi
    • Organizer
      The 4th Asia-Pacific Congress of Sericulture and Insect Biotechnology
    • Place of Presentation
      Haeundae Grand Hotel, Busan, Korea
    • Year and Date
      2015-04-23
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Comparative whole genome analysis of nucleopolyhedroviruses infecting saturniid silkworms by next-generation sequencing2015

    • Author(s)
      K. Sasaki, Z. Kajiura, and J. Kobayashi
    • Organizer
      The 4th Asia-Pacific Congress of Sericulture and Insect Biotechnology
    • Place of Presentation
      Haeundae Grand Hotel, Busan, Korea
    • Year and Date
      2015-04-23
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Whole genome sequence analysis of Antheraea yamamai nucleopolyhedrovirus with next-generation sequencer2014

    • Author(s)
      K. Sasaki, Z. Kajiura and J. Kobayashi
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] テンサンおよびサクサン核多角体病ウイルスのゲノム配列比較2014

    • Author(s)
      佐々木邦, 梶浦善太, 小林淳
    • Organizer
      日本野蚕学会第 20 回大会
    • Place of Presentation
      岡谷商工会議所(岡谷市)
    • Year and Date
      2014-11-14 – 2014-11-15
    • Related Report
      2014 Annual Research Report
  • [Presentation] Disadvantageous deletion mutants retained in nucleopolyhedroviruses isolated from several saturniid wild silkworms2014

    • Author(s)
      K. Sasaki, Y. Huang, M. Shi, X. Wang, Z. Kajiura and J. Kobayashi
    • Organizer
      XVIth International Congress of Virology
    • Place of Presentation
      Palais des Congres (Montreal, Canada)
    • Year and Date
      2014-07-27 – 2014-08-01
    • Related Report
      2014 Annual Research Report
  • [Presentation] 次世代シーケンサーを用いたテンサン核多角体病ウイルスのゲノム配列解析2014

    • Author(s)
      佐々木邦, 梶浦善太, 小林淳
    • Organizer
      第29回中国四国ウイルス研究会
    • Place of Presentation
      山口大学吉田キャンパス(山口市)
    • Year and Date
      2014-06-28 – 2014-06-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] ヤママユガ科野蚕核多角体病ウイルスにおける遺伝子欠損変異と病徴解析2014

    • Author(s)
      佐々木邦, 黄元こう, 石美ねい, 王学英, 梶浦善太, 小林淳
    • Organizer
      日本蚕糸学会第84回大会
    • Place of Presentation
      日本大学生物資源科学部(藤沢市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヤママユガ科野蚕を宿主とする核多角体病ウイルスにおける遺伝子欠損の地理的変異と病徴との関係2013

    • Author(s)
      佐々木邦, 黄元こう, 石美ねい, 王学英, 梶浦善太, 小林淳
    • Organizer
      第28回中国四国ウイルス研究会
    • Place of Presentation
      広島大学霞キャンパス(広島市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヤママユガ科野蚕を宿主とするバキュロウイルスの多様なゲノム変異とそれらの病理学的機能解析2013

    • Author(s)
      佐々木邦, 黄元こう, 石美ねい, 王学英, 梶浦善太, 小林淳
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(神戸市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヤママユガ科野蚕を宿主とする核多角体病ウイルスにおける遺伝子欠損の地理的変異と病徴との関係

    • Author(s)
      佐々木邦, 黄元こう, 石美ねい, 王学英, 梶浦善太, 小林淳
    • Organizer
      昆虫病理研究会
    • Place of Presentation
      東京大学農学部(東京都文京区)
    • Related Report
      2013 Annual Research Report
  • [Book] 最新昆虫病理学(国見裕久・小林迪弘編著)2014

    • Author(s)
      小林淳(分担執筆)
    • Total Pages
      271
    • Publisher
      講談社
    • Related Report
      2013 Annual Research Report
  • [Remarks] 教員の活動レポート~出張編~ 4.小林淳教授

    • URL

      http://www.agr.yamaguchi-u.ac.jp/bioenvi/news/2014/01/post-13.html

    • Related Report
      2015 Annual Research Report

URL: 

Published: 2013-05-21   Modified: 2022-02-16  

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