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Molecular epidemiology and population dynamics of rotaviruses in Asia based on novel comprehensive whole genomic analysis method

Research Project

Project/Area Number 25305022
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section海外学術
Research Field Hygiene and public health
Research InstitutionSapporo Medical University

Principal Investigator

Nobumichi Kobayashi  札幌医科大学, 医学部, 教授 (80186759)

Co-Investigator(Kenkyū-buntansha) 鷲見 紋子  札幌医科大学, 医学部, 准教授 (10363699)
漆原 範子  札幌医科大学, 医学部, 講師 (80396308)
ゴッシュ ソウビック  札幌医科大学, 医学部, 助教 (30597175)
Research Collaborator AIDA Satoru  
WANG Yuanhong  
PAUL Shyamal  
Project Period (FY) 2013-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2016: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2015: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2014: ¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2013: ¥6,110,000 (Direct Cost: ¥4,700,000、Indirect Cost: ¥1,410,000)
Keywordsロタウイルス / ゲノム / 分子疫学 / 遺伝子分節 / 遺伝子交雑 / アジア / 下痢症 / 遺伝子型 / 中国 / バングラデシュ / 系統
Outline of Final Research Achievements

Epidemic dynamics for long periods of human rotaviruses in Asia was analyzed molecular epidemiologically based on whole genome (11 gene segments). In Wuhan, China, G3P[8] was the most prevalent genotype of rotaviruses over past 10 years, which was thereafter replaced by G9P[8]. Change of lineages was detected for most of their gene segments with the passage of time. In Bangladesh, two lineages of the most prevalent G2P[4] genotype in 2010 were replaced by a novel lineage after 3 years. These findings indicated that replacement of gene segments via reassortment and mutation occurred over time among rotaviruses with prevalent genotypes. It was suggested that genetic changes have been occurring constantly even among the same genotype of rotaviruses.

Report

(5 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (28 results)

All 2017 2016 2015 2014 2013 Other

All Int'l Joint Research (5 results) Journal Article (12 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 12 results,  Open Access: 3 results,  Acknowledgement Compliant: 4 results) Presentation (11 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results)

  • [Int'l Joint Research] 武漢市疾病対策制御センター(中国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] マイメンシン医科大学(バングラデシュ)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] 武漢市疾病対策制御センター(中国)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] マイメンシン医科大学(バングラデシュ)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] ヤンゴン第二医科大学(ミャンマー)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Distribution of two distinct Rotavirus B (RVB) strains in the north-central Bangladesh and evidence for reassortment event among human RVB revealed by whole genomic analysis2017

    • Author(s)
      Aung MS, Nahar S, Aida S, Paul SK , Hossain MA, Ahmed S, Haque N, Ghosh S, Malik YS , Urushibara N, Kawaguchiya M, Sumi A, Kobayashi N
    • Journal Title

      Infection Genetics and Evolution

      Volume: 47 Pages: 77-86

    • DOI

      10.1016/j.meegid.2016.11.001

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Multispecies reassortant bovine rotavirus strain carries a novel simian G3-like VP7 genotype2016

    • Author(s)
      Malik YS , Kumar N, Sharma K, Saurabh S, Dhama K, Prasad M, Ghosh S, Bányai K, Kobayashi N, Singh RK.
    • Journal Title

      Infection Genetics and Evolution

      Volume: 41 Pages: 63-72

    • DOI

      10.1016/j.meegid.2016.03.023

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Whole genomic analysis of G2P[4] human Rotaviruses in Mymensingh, north-central Bangladesh2016

    • Author(s)
      Aida S, Nahar S, Paul SK, Hossain MA, Kabir MR, Sarkar SR, Ahmed S, Ghosh S, Urushibara N, Kawaguchiya M, Aung MS, Sumi A, Kobayashi N
    • Journal Title

      Heliyon

      Volume: 2 Issue: 9 Pages: e00168-e00168

    • DOI

      10.1016/j.heliyon.2016.e00168

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Genomic characterization of G3P[6], G4P[6] and G4P[8] human rotaviruses from Wuhan, China: Evidence for interspecies transmission and reassortment events.2015

    • Author(s)
      Zhou X, Wang Y-H, Ghosh S, Tang W-F, Pang B-B, Liu M-Q, Peng J-S, ZhouD-J, Kobayashi N.
    • Journal Title

      Infection Genetics and Evolution

      Volume: 33 Pages: 55-71

    • DOI

      10.1016/j.meegid.2015.04.010

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Analysis of codon usage pattern evolution in avian rotaviruses and their preferred host.2015

    • Author(s)
      Kattoor JJ, Malik YS, Sasidharan A, Rajan VM, Dhama K, Ghosh S, Bányai K, Kobayashi N, Singh RK
    • Journal Title

      Infection Genetics and Evolution

      Volume: 34 Pages: 17-25

    • DOI

      10.1016/j.meegid.2015.06.018

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Whole genomic analysis of a porcine G6P[13] rotavirus strain.2015

    • Author(s)
      Ghosh S, Navarro R, Malik YS, Willingham AL, Kobayashi N
    • Journal Title

      Veterinary Microbiology

      Volume: 18 Issue: 3-4 Pages: 286-298

    • DOI

      10.1016/j.vetmic.2015.09.017

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Exotic rotaviruses in animals and rotaviruses in exotic animals.2014

    • Author(s)
      Ghosh S, Kobayashi N
    • Journal Title

      VirusDisease

      Volume: 25 Issue: 2 Pages: 158-172

    • DOI

      10.1007/s13337-014-0194-z

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular epidemiology and genetic evolution of the whole genome of G3P[8] human rotavirus in Wuhan, China, from 2000 through 20132014

    • Author(s)
      Wang YH, Pang BB, Ghosh S, Zhou X, Shintani T, Urushibara N, Song YW, He MY, Liu MQ, Tang WF, Peng JS, Hu Q, Zhou DJ, Kobayashi N
    • Journal Title

      Plos ONE

      Volume: 9 Issue: 3 Pages: e88850-e88850

    • DOI

      10.1371/journal.pone.0088850

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Hospital based surveillance and genetic characterization of rotavirusstrains in children (2014

    • Author(s)
      Mullick S, Mandal P, Nayak MK, Ghosh S, De P, Rajendran K, Bhattacharya MK, Mitra U, Ramamurthy T, Kobayashi N, Chawla-Sarkar M.
    • Journal Title

      Vaccine

      Volume: 32 Suppl 1 Pages: A20-A28

    • DOI

      10.1016/j.vaccine.2014.03.018

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complex evolutionary patterns of two rare human G3P[9] rotavirus strains possessing a feline/canine-like H6 genotype on an AU-1-like genotype constellation.2013

    • Author(s)
      Wang YH, Pang BB, Zhou X, Ghosh S, Tang WF, Peng JS, Hu Q, Zhou DJ, Kobayashi N.
    • Journal Title

      Infect Genet Evol

      Volume: 16C Pages: 103-112

    • DOI

      10.1016/j.meegid.2013.01.016

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Whole genomic analyses of asymptomatic human G1P[6], G2P[6] and G3P[6] rotavirus strains reveal intergenogroup reassortment events and genome segments of artiodactyl origin.2013

    • Author(s)
      Ghosh S, Urushibara N, Chawla-Sarkar M, Krishnan T, Kobayashi N.
    • Journal Title

      Infect Genet Evol

      Volume: 16C Pages: 165-173

    • DOI

      10.1016/j.meegid.2012.12.019

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The origin of two rare human P[10] rotavirus strains2013

    • Author(s)
      Ghosh S, Urushibara N, Kawaguchiya M, Shintani T, Kobayashi N
    • Journal Title

      Infect Genet Evol

      Volume: 13 Pages: 292-300

    • DOI

      10.1016/j.meegid.2012.10.021

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] Whole genomic analysis of human Rotavirus B in Bangladesh: evidence for co-circulation of genetically distinct strains.2016

    • Author(s)
      Kobayashi N, Aung MS, Aida S, Urushibara N, Kawaguchiya M, Sumi A, Paul SK, Nahar S, Hossain MA.
    • Organizer
      50th Joint Working Conference on Viral Diseases US-Japan Cooperative Medical Science Program
    • Place of Presentation
      米国(ベセスダ)
    • Year and Date
      2016-01-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Whole genomic analysis of a porcine G5P[13] Rotavirus strain2016

    • Author(s)
      Navarro R, Aung MS, Kobayashi N, Ghosh S
    • Organizer
      First Joint AITVM-STVM conference (the Association of Institutions for Tropical Veterinary Medicine (AITVM) and the Society for Tropical Veterinary Medicine (STVM))
    • Place of Presentation
      ベルリン(ドイツ)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Genetic diversity of human Rotavirus B detected in Bangladesh.2015

    • Author(s)
      Aung Meijisoe, Satoru Aida, Samsoon Nahar, Mitsuyo Kawaguchiya, Noriko Urushibara, Shyamal Kumar Paul, Muhammad Akram Hossain, Nobumichi Kobayashi.
    • Organizer
      第63回日本ウイルス学会総会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2015-11-23
    • Related Report
      2015 Annual Research Report
  • [Presentation] バングラデシュにおけるG2P[4]ヒトロタウイルス株の全遺伝子配列に基づく分子疫学的解析.2015

    • Author(s)
      Satoru Aida, Souvik Ghosh, Noriko Urushibara, Aung Meijisoe, Shyamal Kumar Paul, Nobumichi Kobayashi.
    • Organizer
      第63回日本ウイルス学会総会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2015-11-23
    • Related Report
      2015 Annual Research Report
  • [Presentation] Analysis on genomic makeup of G3P[6], G4P[6] and G4P[8] rotavirus strains in China.2015

    • Author(s)
      Kobayashi N, Zhou X, Wang YH, Ghosh S.
    • Organizer
      17th International Conference on Emerging Infectious Diseases
    • Place of Presentation
      Taipei, Taiwan
    • Year and Date
      2015-01-26 – 2015-01-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Predominance of G9P[8] rotavirus among patients with gastroenteritis in Wuhan, China, during 2011-2014.2014

    • Author(s)
      Wang YH, Zhou X, Pang BB, Tang WF, Peng JS, Hu Q, Zhou DJ, Kobayashi N.
    • Organizer
      7th Asian Congress of Pediatric Infectious Diseases
    • Place of Presentation
      Beijing, China
    • Year and Date
      2014-10-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] Whole genomic analysis of human rotavirus strains causing asymptomatic infections in humans.2014

    • Author(s)
      Kobayashi N, Ghosh S, Sumi A, Taniguchi K, Wang YH.
    • Organizer
      10th China-Japan International Conference of Virology.
    • Place of Presentation
      Changchun, China
    • Year and Date
      2014-08-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] Whole genomic analysis of G3P[6], G4P[6] and G4P[8] rotavirus strains in Wuhan, China.2014

    • Author(s)
      Kobayashi N, Zhou X, Wang YH, Ghosh S, Liu MQ, Pang BB, Tang WF, Peng JS, Hu Q, Zhou DJ.
    • Organizer
      International Congress of Virology (IUMS, 2014)
    • Place of Presentation
      Montreal, Canada
    • Year and Date
      2014-07-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] 全ゲノム解析からみた世界のヒトロタウイルスの分子進化と感染伝播の様態2014

    • Author(s)
      小林宣道
    • Organizer
      第55回日本臨床ウイルス学会
    • Place of Presentation
      札幌
    • Year and Date
      2014-06-15
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 全遺伝子配列に基づく中国の主流行型G3P[8]ヒトロタウイルスの12年間にわたる分子進化様態の解析2013

    • Author(s)
      小林宣道、Ghosh S、新谷つづみ、Wang Y-H、Zhou X、Pang BB
    • Organizer
      第61回日本ウイルス学会学術集会
    • Place of Presentation
      神戸
    • Related Report
      2013 Annual Research Report
  • [Presentation] Whole genomic analysis of common and unusual equine group A rotavirus strains detected in Japan2013

    • Author(s)
      Ghosh S、谷口孝喜、合田悟、小林宣道
    • Organizer
      第61回日本ウイルス学会学術集会
    • Place of Presentation
      神戸
    • Related Report
      2013 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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