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Development of statistical method for case-cohort design when measurements of interests are known to be missing

Research Project

Project/Area Number 25330039
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Statistical science
Research InstitutionShiga University (2016)
Oita University (2013-2015)

Principal Investigator

Izumi Shizue  滋賀大学, データサイエンス教育研究センター, 教授 (70344413)

Co-Investigator(Kenkyū-buntansha) 玉腰 暁子  北海道大学, 医学研究科, 教授 (90236737)
伊藤 陽一  北海道大学, 医学研究科, 准教授 (10334236)
野間 久史  統計数理研究所, データ科学研究系, 准教授 (70633486)
Co-Investigator(Renkei-kenkyūsha) TAKEUCHI AYANO  慶應義塾大学, 医学部, 専任講師 (80511196)
Cologne John  放射線影響研究所, 統計部, 研究員 (50344411)
Research Collaborator SUENAGA SATOSHI  
NAGATA DAIKI  
Project Period (FY) 2013-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2014: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2013: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords医薬生物 / ゲノム統計解析 / ビッグデータ活用 / ゲノム疫学
Outline of Final Research Achievements

In the case-cohort study, costly and laborious research can be greatly saved by measuring expensive genome information only from selected subjects, not the entire cohort. However, since data observed from the target frequently includes missing values, data analysis becomes difficult. In this study, we developed a novel theoretical framework for case-cohort studies when measurements of interests are known to be missing. We also examined the application of the proposed method to large-scale genomic epidemiological studies. From results verified by numerical experiments, when the outcomes of the majority of the subjects in the cohort are missing, the sub-cohort extraction or data analysis performed by the traditional method leads bias in the effects of the interesting variable.

Report

(5 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (47 results)

All 2017 2016 2015 2014 2013

All Journal Article (19 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 18 results,  Open Access: 13 results,  Acknowledgement Compliant: 5 results) Presentation (28 results) (of which Int'l Joint Research: 5 results,  Invited: 8 results)

  • [Journal Article] A global goodness-of-fit test for linear structural mean models2017

    • Author(s)
      Taguri, M., Izumi, S.
    • Journal Title

      Behaviormetrika

      Volume: 44 Issue: 1 Pages: 253-262

    • DOI

      10.1007/s41237-016-0003-7

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Erratum to: A global goodness-of-fit test for linear structural mean models2017

    • Author(s)
      Taguri, M., Izumi, S.
    • Journal Title

      Behaviormetrika

      Volume: 44 Issue: 1 Pages: 263-263

    • DOI

      10.1007/s41237-016-0012-6

    • Related Report
      2016 Annual Research Report
    • Open Access
  • [Journal Article] Prenatal Exposure to Perfluoroalkyl Acids and Prevalence of Infectious Diseases up to 4 Years of Age2017

    • Author(s)
      Goudarzi H., Miyashita C, Okada E., Kashino I., Chen C.-J., Ito S., Araki A., Kobayashi S., Matsuura H., Kishi R.
    • Journal Title

      Environment International

      Volume: - Pages: 124-132

    • DOI

      10.1016/j.envint.2016.05.020

    • NAID

      120006649165

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Logistic regression model for survival time analysis using time-varying coefficients2016

    • Author(s)
      Satoh K, Tonda T, Izumi S
    • Journal Title

      American Journal of Mathematical and Management Sciences

      Volume: 35 Issue: 4 Pages: 353-360

    • DOI

      10.1080/01966324.2016.1215945

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] 広島平和宣言における単語出現頻度に基づく広島の平和観の経時変化について2016

    • Author(s)
      冨田哲治,佐藤健一,和泉志津恵
    • Journal Title

      長崎医学雑誌

      Volume: 91 Pages: 176-179

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interaction between a single exposure and age in cohort-based hazard rate models impacted the statistical distribution of age at onset2016

    • Author(s)
      Izumi, S., Sakata, R., Yamada, M., Cologne J.
    • Journal Title

      Journal of Clinical Epidemiology

      Volume: 71 Pages: 43-50

    • DOI

      10.1016/j.jclinepi.2015.10.004

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Comprehensive Assessment of Impaired Peripheral and Coronary Artery Endothelial Function in Smokers Using Brachial Artery Ultrasound and Oxygen-15-labeled Water PET2015

    • Author(s)
      Noriki Ochi, Keiichiro Yoshinaga,Yoichi M. Ito, Yuuki Tomiyama, Mamiko Inoue, Mutsumi Nishida, Osamu Manabe, Hitoshi Shibuya , Chikara Shimizu, Eriko Suzuki, Satoshi Fujii, Chietsugu Katoh, Nagara Tamaki.
    • Journal Title

      Journal of Cardiology

      Volume: in press Issue: 4 Pages: 316-323

    • DOI

      10.1016/j.jjcc.2015.10.006

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Association between shift work and the risk of death from biliary tract cancer in Japanese men2015

    • Author(s)
      Lin, Y., Nishiyama, T., Kurosawa, M., Tamakoshi, A., Kubo, T., Fujino, Y., Kikuchi, S.; JACC Study Group
    • Journal Title

      BMC Cancer

      Volume: 15 Issue: 1 Pages: 757-757

    • DOI

      10.1186/s12885-015-1722-y

    • NAID

      120005758417

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] <i>Helicobacter Pylori</i> Infection and Risk of Death From Cardiovascular Disease Among the Japanese Population: a Nested Case-Control Study within the JACC Study2015

    • Author(s)
      Lin, Y., Obata, Y., Kikuchi, S., Tamakoshi, A., Iso, H.; JACC Study Group
    • Journal Title

      Journal of Atherosclerosis and Thrombosis

      Volume: 22 Issue: 11 Pages: 1207-1213

    • DOI

      10.5551/jat.27987

    • NAID

      130005106113

    • ISSN
      1340-3478, 1880-3873
    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The Japan Environment and Children&rsquo;s Study (JECS): A Preliminary Report on Selected Characteristics of Approximately 10 000 Pregnant Women Recruited During the First Year of the Study2015

    • Author(s)
      Michikawa T, Nitta H, Nakayama SF, Ono M, Yonemoto J, Tamura K, Suda E, Ito H, Takeuchi A, Kawamoto T, for the Japan Environment and Children’s Study Group
    • Journal Title

      Journal of Epidemiology

      Volume: 25 Issue: 6 Pages: 452-458

    • DOI

      10.2188/jea.JE20140186

    • NAID

      130005074463

    • ISSN
      0917-5040, 1349-9092
    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 経時的に観測されたテキストデータに対する変化係数モデルに基づく統計的な分類方法と視覚化について2015

    • Author(s)
      和泉志津恵,佐藤健一,川野徳幸
    • Journal Title

      計算機統計学

      Volume: 28

    • NAID

      130005631732

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Simultaneous analysis of the gene expression profiles of cancer and stromal cells in endometrial cancer.2014

    • Author(s)
      Iguchi Y, Ito YM, Kataoka F, Nomura H, Tanaka H, Chiyoda T, Hashimoto S, Nishimura S, Takano M, Yamagami W, Susumu N, Aoki D, Tsuda H.
    • Journal Title

      Genes, Chromosomes & Cancer

      Volume: 53 Issue: 9 Pages: 725-37

    • DOI

      10.1002/gcc.22182

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Prognostic factors for survival in patients with high-grade meningioma and recurrence-risk stratification for application of radiotherapy.2014

    • Author(s)
      Yamaguchi, S., Terasaka, S., Kobayashi, H., Asaoka, K., Motegi, H., Nishihara, H., Kanno, H., Onimaru, R., Ito, Y.M., Shirato, H., Houkin, K.
    • Journal Title

      PLoS One

      Volume: 9 Issue: 5 Pages: e97108-e97108

    • DOI

      10.1371/journal.pone.0097108

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Rationale and study design of the Japan environment and children’s study (JECS)2014

    • Author(s)
      Kawamoto T, Nitta H, Murata K, Toda E, Tsukamoto N, Hasegawa M, Yamagata Z, Kayama F, Kshi R, Ohya Y, Saito H, Sago H, Okuyama M, Ogata T, Yokoya S, Koresawa Y, Shibata Y, Nakayama S, Michikawa T, Takeuchi A, Saitoh H
    • Journal Title

      BMC Public Health

      Volume: 14 Issue: 1 Pages: 25-25

    • DOI

      10.1186/1471-2458-14-25

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Serum interleukin-6 associated with hepatocellular carcinoma risk: a nested case-control study2014

    • Author(s)
      Waka Ohishi, John B. Cologne, Saeko Fujiwara, Gen Suzuki, Tomonori Hayashi, Yasuharu Niwa, Masazumi Akahoshi, Keiko Ueda, Masataka Tsuge, Kazuaki Chayama
    • Journal Title

      International Journal of Cancer

      Volume: 134巻 Issue: 1 Pages: 154-163

    • DOI

      10.1002/ijc.28337

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 観察研究におけるバイアスの感度解析2014

    • Author(s)
      竹内文乃, 野間 久史
    • Journal Title

      統計数理

      Volume: 62 Pages: 77-92

    • NAID

      120006020824

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Current practice for the prevention and treatment of missing data in confirmatory clinical trials: A survey of Japan-based and foreign-based pharmaceutical manufacturers in Japan2014

    • Author(s)
      Tanaka, S., Fukinbara, S., Tsuchiya, S., Suganami, H., Ito, Y.M.
    • Journal Title

      Therapeutic Innovation & Regulatory Science

      Volume: - Issue: 6 Pages: 717-723

    • DOI

      10.1177/2168479014530974

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] 位置情報を用いた疫学研究とその統計的方法2014

    • Author(s)
      高橋邦彦, 和泉志津恵, 竹内文乃
    • Journal Title

      統計数理

      Volume: 62

    • NAID

      120006020806

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] ケースコホート研究の理論と統計手法2014

    • Author(s)
      野間久史
    • Journal Title

      統計数理

      Volume: 62

    • NAID

      120006020815

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] 生存時間データにおけるロジスティック回帰モデルを用いたオッズ比の推測2017

    • Author(s)
      佐藤健一,冨田哲治,和泉志津恵
    • Organizer
      第27回日本疫学会学術総会
    • Place of Presentation
      ベルクラシック甲府(Yamanashi, Japan)
    • Year and Date
      2017-01-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] Big Data and Health- From Data Science Viewpoint -2017

    • Author(s)
      Izumi, S.
    • Organizer
      International Workshop on Bioethics Governance 2017
    • Place of Presentation
      滋賀大学大津サテライトキャンパス(Shiga, Japan)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Estimating the effects of exposure in a case-cohort design of Hokkaido Cohort study when some binary outcomes of interests are known to be missing2016

    • Author(s)
      Izumi, S., Sato, T., Ito, Y.M.
    • Organizer
      XXVIIIth International Biometric Conference (IBC2016)(国際学会)
    • Place of Presentation
      Victoria Convention Centre. (Victoria, Canada)
    • Year and Date
      2016-07-10
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] How does the statistical interaction between a single point exposure and attained age imply the shape of age-at-onset distribution?2015

    • Author(s)
      Izumi, S., Cologne, J.
    • Organizer
      East Asia Regional Biometric Conference (EAR-BC) 2015
    • Place of Presentation
      Kyushu University. (Fukuoka, Japan)
    • Year and Date
      2015-12-20
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Construct a simultaneous confidence interval for linear time varying coefficients in Cox proportional hazard model2015

    • Author(s)
      Izumi, S., Tonda, T., Satoh K.
    • Organizer
      Joint Statistical Meetings (JSM) 2015
    • Place of Presentation
      Washington State Convention Center. (Seattle, U.S.A.)
    • Year and Date
      2015-08-08
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Innovative mathematical modelling for the effects of chronic exposure to radiation on cancer risk2015

    • Author(s)
      Izumi, S., Ohtaki, M., Aihara, K.
    • Organizer
      15th International Congress of Radiation Research (ICRR2015)
    • Place of Presentation
      Kyoto International Conference Center. (Kyoto, Japan)
    • Year and Date
      2015-05-25
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Interaction between exposure and age in cohort-based risk models: effect modification or age dependence of the excess rate?2015

    • Author(s)
      Cologne, J., Izumi, S., Sakata, R., Yamada, M.
    • Organizer
      応用統計学会2015 年度年会
    • Place of Presentation
      京都大学医学部創立百周年記念施設芝蘭会館(京都府京都市)
    • Year and Date
      2015-03-14
    • Related Report
      2014 Research-status Report
  • [Presentation] Comparing the effects of duration of chronic exposure to radioactive fallout on the cancer risk with those of a single point exposure, based on a simulation study.2015

    • Author(s)
      Izumi, S., Nagata, D., Aihara, K., Ohtaki, M.
    • Organizer
      The 5th International Symposium of RIRBM, Hiroshima University. -Biological Effects of Low Dose Radiation-
    • Place of Presentation
      Hiroshima University. (Hiroshima, Japan)
    • Year and Date
      2015-03-02 – 2015-03-03
    • Related Report
      2014 Research-status Report
  • [Presentation] Statistical inference for linear varying coefficients in Cox proportional hazard model.2014

    • Author(s)
      Izumi, S., Tonda, T., Satoh, K.
    • Organizer
      Kyoto International Conference on Modern Statistics in the 21st Century
    • Place of Presentation
      Kyoto International Conference Center(Kyoto, Japan)
    • Year and Date
      2014-11-17 – 2014-11-18
    • Related Report
      2014 Research-status Report
  • [Presentation] 発がん数理モデルに基づく曝露の期間を考慮した過剰相対リスクの推定について2014

    • Author(s)
      和泉志津恵
    • Organizer
      京都生物統計セミナー
    • Place of Presentation
      京都大学大学院医学研究科(京都府京都市)
    • Year and Date
      2014-11-11
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Study design and methods based on the two stage sampling2014

    • Author(s)
      Izumi, S.
    • Organizer
      科研費シンポジウム「多様な分野における統計科学の教育・理論・応用の新展開」
    • Place of Presentation
      新潟大学駅南キャンパスときめいと講義室A(新潟県新潟市)
    • Year and Date
      2014-10-24 – 2014-10-26
    • Related Report
      2014 Research-status Report
  • [Presentation] 臨床研究における生物統計学の最近の進展 - 研究デザイン,解析方法,モデル選択-2014

    • Author(s)
      和泉志津恵
    • Organizer
      第13回久留米大学バイオ統計学フォーラム
    • Place of Presentation
      JR博多シティ大会議室(福岡県福岡市)
    • Year and Date
      2014-09-26
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 線形構造平均モデルにおける適合性検定についての検討2014

    • Author(s)
      和泉志津恵, 田栗正隆
    • Organizer
      2014年度統計関連学会連合大会
    • Place of Presentation
      東京大学(東京都文京区)
    • Year and Date
      2014-09-13 – 2014-09-16
    • Related Report
      2014 Research-status Report
  • [Presentation] Comparison of sampling schemes for a case-cohort design in Hokkaido cohort study when some outcomes of interests are known to be missing.2014

    • Author(s)
      Ito, Y.M., Izumi, S.
    • Organizer
      The XXVII International Biometric Conference (IBC2014)
    • Place of Presentation
      Firenze Fiera (Firenze, Florence, Italy)
    • Related Report
      2013 Research-status Report
  • [Presentation] A goodness-of-fit test for linear structural mean models.2014

    • Author(s)
      Taguri, M., Izumi, S.
    • Organizer
      The XXVII International Biometric Conference (IBC2014)
    • Place of Presentation
      Firenze Fiera (Firenze, Florence, Italy)
    • Related Report
      2013 Research-status Report
  • [Presentation] A new approach for statistical classification and visualization for longitudinal text data.2014

    • Author(s)
      Izumi, S., Satoh, K.
    • Organizer
      The XXVII International Biometric Conference (IBC2014)
    • Place of Presentation
      Firenze Fiera (Firenze, Florence, Italy)
    • Related Report
      2013 Research-status Report
  • [Presentation] Innovative mathematical modelling for the effects of chronic exposure to radiation on cancer risk.2014

    • Author(s)
      Izumi, S., Ohtaki M., Aihara, K.
    • Organizer
      The XXVII International Biometric Conference (IBC2014)
    • Place of Presentation
      Firenze Fiera (Firenze, Florence, Italy)
    • Related Report
      2013 Research-status Report
  • [Presentation] 2段階ケース・コホート研究における標本サイズの設計2014

    • Author(s)
      和泉志津恵, 永田大貴, 伊藤陽一
    • Organizer
      2014年度日本計量生物学会年会
    • Place of Presentation
      統計数理研究所(東京都立川市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 2段階ケース・コントロール研究における検出力の算出とその評価2014

    • Author(s)
      永田大貴, 和泉志津恵, 末永聡史
    • Organizer
      2014年度日本計量生物学会年会
    • Place of Presentation
      統計数理研究所(東京都立川市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 疫学研究における新しい研究デザインと解析 - nested case-control study, case-cohort studyを中心として -2014

    • Author(s)
      和泉志津恵
    • Organizer
      北海道大学病院 高度先進医療支援センター 講演会
    • Place of Presentation
      北海道大学医学研究科(札幌市北区)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 経時的テキストデータにおける出現パターンの抽出と分類2013

    • Author(s)
      和泉志津恵,佐藤健一,松浦陽子, 川野徳幸
    • Organizer
      2013年度統計関連学会連合大会
    • Place of Presentation
      大阪大学(大阪府豊中市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 放射線への連続曝露の場合の多段階発がん数理モデルの構築と超過リスクの定量的評価2013

    • Author(s)
      和泉志津恵,大瀧 慈,合原一幸
    • Organizer
      2013年度統計関連学会連合大会
    • Place of Presentation
      大阪大学(大阪府豊中市)
    • Related Report
      2013 Research-status Report
  • [Presentation] ケースコホート研究の統計解析:2段階ケースコントロール研究との等価性と漸近有効な推定方式2013

    • Author(s)
      野間久史,田中司朗
    • Organizer
      日本行動計量学会第41回大会
    • Place of Presentation
      東邦大学(千葉県船橋市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Some examples of the treatment of missing data in investigator-initiated clinical trials.2013

    • Author(s)
      Ito, Y.M.
    • Organizer
      Joint Conference of the Fifth Annual International Symposium on the Evaluation of Clinical Trials (Methodologies and Applications) and the Fourth East Asia Regional Biometric Conference 2013
    • Place of Presentation
      Renmin University of China (Beijing, China)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Multiple imputation analysis of nested case-control and case-cohort studies.2013

    • Author(s)
      Noma, H., Tanaka, S., Tanaka, S., Izumi, S.
    • Organizer
      The 46th Society for Epidemiologic Research (SER) Annual Meeting
    • Place of Presentation
      Boston Park Plaza Hotel (Boston, Massachusetts, U.S.A.)
    • Related Report
      2013 Research-status Report
  • [Presentation] Nested Case-Control Design:バイオマーカを用いた分子疫学研究の標本数の設計2013

    • Author(s)
      和泉志津恵
    • Organizer
      SAS統計手法研究部会
    • Place of Presentation
      北海道大学医学研究科(札幌市北区)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Case-Cohort Design:調査・実験のコストと労力を節減するための新しい臨床研究・疫学研究のデザイン2013

    • Author(s)
      野間久史
    • Organizer
      SAS統計手法研究部会
    • Place of Presentation
      北海道大学医学研究科(札幌市北区)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 欠測データに対する解析手法の概説2013

    • Author(s)
      伊藤陽一
    • Organizer
      2013年度日本計量生物学会年会・特別セッション
    • Place of Presentation
      パルセいいざか(福島県福島市)
    • Related Report
      2013 Research-status Report
    • Invited

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Published: 2014-07-25   Modified: 2019-07-29  

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