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Construction of a DNA double-strand break model and its application to studies of DNA repair and low dose irradiation effects

Research Project

Project/Area Number 25340044
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Risk sciences of radiation and chemicals
Research InstitutionNational Institute of Health Sciences

Principal Investigator

Honma Masamitsu  国立医薬品食品衛生研究所, 変異遺伝部, 部長 (30250179)

Research Collaborator Yasui Manabu  
Suzuki Tetsuya  
Sassa Akira  
Project Period (FY) 2013-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2017: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2016: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2014: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2013: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
KeywordsDNA修復 / 放射線防護 / 低線量モデル / 発がん / 遺伝的不安定性 / 相同組み換え / BLMヘリケース / ゲノム編集技術 / DNA 修復
Outline of Final Research Achievements

As a model for low dose radiation, I developed a system that generates only one DNA double-strand breaks (DSB)DSB in the human cell genome using a restriction enzyme I-SceI site. This system revealed that a DSB mainly causes small deletions by non-homologous end joining (NHEJ). Involvement of homologous recombination (HR) was less than 10% of the whole. In addition, in order to elucidate the mechanism of genome integrity, I focused on recombination repair between chromosomes. I constructed BLM knocked out (KO) cells using genome editing technology in the system. In BLM-KO cells, the enhancement of spontaneous HR frequency, cross-type gene conversion, non-cross-type long gene conversion, and deletion were frequently observed. BLM was considered to be involved in the maintenance of Holliday structure, and the defect destabilizes Holliday structure, leading to the deletion and recombination of the genome in a large area.

Academic Significance and Societal Importance of the Research Achievements

放射線はゲノムに対して最も重篤であるDNA二本鎖切断(DSB)を誘発し、それが、がんの主たる要因と考えられているが、放射線はそれ以外の損傷(酸化ストレス、一本鎖切断等)も引き起こすため、DSBの修復機構や、がん化への関与の研究は非常に困難である。本研究では制限酵素に注目し、たった一つのDSBをヒト細胞のゲノム中に発生させる究極の低線量モデルを世界で始めて構築した。これによりDSBには閾値が存在せず、高い確率で突然変異を誘発することを明らかにし、放射線のリスク評価の考えを前進させた。

Report

(7 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • 2015 Research-status Report
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (25 results)

All 2019 2018 2016 2015 2014

All Journal Article (13 results) (of which Int'l Joint Research: 5 results,  Open Access: 8 results,  Peer Reviewed: 12 results,  Acknowledgement Compliant: 4 results) Presentation (12 results) (of which Int'l Joint Research: 7 results,  Invited: 8 results)

  • [Journal Article] Science for Genome Safety2019

    • Author(s)
      Honma Masamitsu
    • Journal Title

      Impact

      Volume: 2019 Issue: 3 Pages: 59-61

    • DOI

      10.21820/23987073.2019.3.59

    • Related Report
      2018 Annual Research Report
    • Open Access
  • [Journal Article] Mutator phenotype and DNA double-strand break repair in BLM helicase-deficient human cells.2016

    • Author(s)
      Suzuki T, Yasui M, Honma M
    • Journal Title

      Mol Cell Biol.

      Volume: 36 Issue: 23 Pages: 2877-2889

    • DOI

      10.1128/mcb.00443-16

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] The role of DNA polymerase zeta in translesion synthesis across bulky DNA adducts and cross-links in human cells2016

    • Author(s)
      T. Suzuki, P. Gruz, M. Honma, N. Adachi and T. Nohmi
    • Journal Title

      Mutation Research

      Volume: 791-792 Pages: 35-41

    • DOI

      10.1016/j.mrfmmm.2016.08.004

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Mutagenic consequences of cytosine alterations site-specifically embedded in the human genome.2016

    • Author(s)
      Sassa A, Kanemaru Y, Kamoshita N, Honma M, Yasui M.
    • Journal Title

      Genes and Environment

      Volume: 38 Issue: 1 Pages: 17-17

    • DOI

      10.1186/s41021-016-0045-9

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Epigenetic mutagen as histone modulator can be detected by yeast flocculation2016

    • Author(s)
      Sugiyama, K., Furusawa, H., Shimizu, M., Gruz, P. and Honma, M
    • Journal Title

      Mutagenesis

      Volume: 31 Issue: 6 Pages: 687-693

    • DOI

      10.1093/mutage/gew041

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Sensitivity of human cells expressing low-fidelity or weak-catalytic-activity variants of DNA polymerase ξ to genotoxic stresses2016

    • Author(s)
      T. Suzuki, P. Gruz, M. Honma, N. Adachi and T. Nohmi
    • Journal Title

      DNA Repair

      Volume: 45 Pages: 34-43

    • DOI

      10.1016/j.dnarep.2016.06.002

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Xeroderma Pigmentosum Group A Suppresses Mutagenesis Caused by Clustered Oxidative DNA Adducts in the Human Genome2015

    • Author(s)
      Sassa A, Kamoshita N, Kanemaru Y, Honma M, Yasui M
    • Journal Title

      PLOS ONE

      Volume: 10 Issue: 11 Pages: e0142218-e0142218

    • DOI

      10.1371/journal.pone.0142218

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Smarcal1 promotes double-strand-break repair by nonhomologous end-joining2015

    • Author(s)
      Keka IS, Mohiuddin, Maede Y, Rahman MM, Sakuma T, Honma M, Yamamoto T, Takeda S, Sasanuma H
    • Journal Title

      Nucleic Acid Research

      Volume: 13 Issue: 13 Pages: 6259-6372

    • DOI

      10.1093/nar/gkv621

    • NAID

      120005617590

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Evaluation of the in vivo genotoxicity of Allura Red AC (Food Red No. 40)2015

    • Author(s)
      Honma M
    • Journal Title

      Food and Chemical Toxicology

      Volume: 84 Pages: 270-275

    • DOI

      10.1016/j.fct.2015.09.007

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Catalytic and non-catalytic roles of DNA polymerase κ in the protection of human cells against genotoxic stresses2015

    • Author(s)
      Kanemaru Y, Suzuki T, Niimi N, Gruze P, Matsumoto K, Adachi N, Honma M, Nohmi T
    • Journal Title

      Environmental Moleculer Mutagenesis

      Volume: 56 Issue: 8 Pages: 650-662

    • DOI

      10.1002/em.21961

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] in vivo evidence that phenylalanine 171 acts as a molecular brake for translesion DNA synthesis across benzo[a]pyrene DNA adducts by human DNA polymerase2014

    • Author(s)
      A. Sassa, T. Suzuki, Y. Kanemaru, N. Niimi, H. Fujimoto, A. Katafuchi, P. Gruz, M. Yasui, R.C. Gupta, F. Johnson, T. Ohta, M. Honma, N. Adachi and T. Nohmi
    • Journal Title

      DNA Repair

      Volume: 15 Pages: 21-28

    • DOI

      10.1016/j.dnarep.2013.12.008

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Effects of the proposed top concentration limit on an in vitro chromosomal aberration test to assay sensitivity or to reduce the number of false positives.2014

    • Author(s)
      Morita, T., Miyajima, A., Hatano, A., Honma, M
    • Journal Title

      Mutation Research

      Volume: 769 Pages: 34-49

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Tracing the fates of site-specifically introduced DNA adducts in the human genome.2014

    • Author(s)
      Yasui M, Kanemaru Y, Kamoshita N, Suzuki T, Arakawa T, and Honma M.
    • Journal Title

      DNA Repair

      Volume: 15 Pages: 11-20

    • DOI

      10.1016/j.dnarep.2014.01.003

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] A Fate of DNA Double Strand Break in Human Cells Influenced by Exogenous or Endogenous Circumstances2018

    • Author(s)
      Masamitsu Honma
    • Organizer
      42nd Anneual Meeting of Environmental Mutagen Society in India
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 何故、今、変異原性in silicoなのか?2016

    • Author(s)
      本間 正充
    • Organizer
      日本環境変異原学会第45回大会
    • Place of Presentation
      つくば
    • Year and Date
      2016-11-17
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] ICH Genotoxicity Guideline2016

    • Author(s)
      Masamitsu Honma
    • Organizer
      Symposium on Genetic Toxicology and Development Toxicology
    • Place of Presentation
      中国・ハイラル
    • Year and Date
      2016-08-27
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 遺伝毒性発がん物質のリスク評価2016

    • Author(s)
      本間 正充
    • Organizer
      第43回日本毒性学会学術年会
    • Place of Presentation
      名古屋
    • Year and Date
      2016-06-29
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] AMES/QSAR International Collaborative Study2016

    • Author(s)
      Masamitsu Honma
    • Organizer
      QSAR2016
    • Place of Presentation
      米国・マイアミ
    • Year and Date
      2016-06-13
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] TRACING THE FATES OF SITE-SPECIFICALLY INTRODUCED OXIDATIVE DNA DAMAGE IN THE HUMAN GENOME2016

    • Author(s)
      Honma1 M, Kanemaru Y, Kamoshita N, Suzuki T, Arakawa T, Yasui
    • Organizer
      14th International Workshop on Radiation Damage to DNA
    • Place of Presentation
      オーストラリア メルボルン
    • Year and Date
      2016-03-20
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] ゲノム上に起きたDNA損傷の運命をターゲットミュータジェネシスにより追跡する2016

    • Author(s)
      本間 正充
    • Organizer
      日本環境変異原学会公開シンポジウム
    • Place of Presentation
      東京
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] DNA Double Strand Break Repair in BLM Deficient Human Cells.2015

    • Author(s)
      Honma M, Suzuki T
    • Organizer
      46th Annual Meeting of Environmental Mutagenesis and Genomics Society
    • Place of Presentation
      米国 ニューオリンズ
    • Year and Date
      2015-09-25
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Honma M, Ukai A, Hamasaki K, KodamGenome mapping of chromosome regions damaged by ionizing irradiation of human blood T-cells using CGH-microarray analysis2015

    • Author(s)
      Honma M, Ukai A, Hamasaki K, Kodama Y, Noda A, Kusunoki Y
    • Organizer
      15th International Congress of Radiation Research
    • Place of Presentation
      京都
    • Year and Date
      2015-05-26
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Trend and Progress of OECD Genotoxicity Testing Guidelines2015

    • Author(s)
      Honma M
    • Organizer
      39th Annual Meeting of Environmental Mutagen Society of India
    • Place of Presentation
      インド インパール
    • Year and Date
      2015-05-18
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Tracing the fates of site-specifically introduced DNA adducts in the human genome.2014

    • Author(s)
      Honma, M., Yasui, M., Kanemaru, Y., Kamoshita, N., Suzuki, T., Arakawa, T.
    • Organizer
      4回アジア環境変異原学会
    • Place of Presentation
      インド、コルカタ
    • Year and Date
      2014-12-10 – 2014-12-12
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Demonstration of non-threshold of 8-oxoG inducing genotoxicity by targeted mutagenesis.2014

    • Author(s)
      Honma, M., Yasui, M., Kanemaru, Y., Kamoshita, N., Suzuki, T., Arakawa, T.
    • Organizer
      第43回ヨーロッパ環境変異原学会
    • Place of Presentation
      英国、ランカスター
    • Year and Date
      2014-07-07 – 2014-07-09
    • Related Report
      2014 Research-status Report

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Published: 2014-07-25   Modified: 2020-03-30  

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