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Study toward a practical method for protein structure analysis using an artifact-free fluorescence-detected circular dichroism

Research Project

Project/Area Number 25410044
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Organic chemistry
Research InstitutionHiroshima University

Principal Investigator

Nehira Tatsuo  広島大学, 総合科学研究科, 准教授 (60321692)

Co-Investigator(Renkei-kenkyūsha) ISHIDA ATSUHIKO  広島大学, 大学院総合科学研究科, 教授 (90212886)
YAMAZAKI TAKESHI  広島大学, 大学院総合科学研究科, 教授 (30192397)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2013: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Keywordsタンパク質 / 円二色性 / 蛍光 / 蛋白質 / 有機化学
Outline of Final Research Achievements

Aiming at a practical protein structure analysis with fluorescence-detected CD, structure-spectrum relationship was investigated by using a synthetic library of oligopeptides that contain Trp as a fluorescent amino acid. Trp was derivatized systematically with a variety of oligoprolines as rigid spacers. As a result of careful comparison among those FDCD spectra, it was inferred from the expansion at Trp C-terminal that observable are two interactions, the coupling of Trp with neighboring peptides and the energy transfer from Phe to Trp over the spacer. On the other hand, the expansion at Trp N-terminal implied that the coupling with neighboring peptides would be suppressed. A micro-scale cell that requires only a tenth of volumes was also developed.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (11 results)

All 2015 2014

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (6 results) (of which Int'l Joint Research: 4 results)

  • [Journal Article] Novel himachalene-type sesquiterpenes from male adults of Chinese Windmill butterfly, Byasa alcinous alcinous2015

    • Author(s)
      Hisashi Omura, Taro Noguchi, Tatsuo Nehira
    • Journal Title

      Natural Products Researches

      Volume: 29 Issue: 4 Pages: 1-6

    • DOI

      10.1080/14786419.2015.1019352

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Dehydroxylation of stilbenoid oligomers: absolute configuration determination via comparison of experimental and theoretical electronic circular dichroic spectra2014

    • Author(s)
      Tetsuro Ito, Tatsuo Nehira
    • Journal Title

      Tetrahedron Letters

      Volume: 55 Issue: 35 Pages: 314-318

    • DOI

      10.1016/j.tet.2014.06.074

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Neomacrophorin I, II, and III, novel drimenyl cyclohexanes with hydroxylated butanoates from Trichoderma sp. 1212-032014

    • Author(s)
      3. Hirose, A.; Maeda, H.; Tonouchi, A.; Nehira, T.; Hashimoto, M.
    • Journal Title

      Tetrahedron

      Volume: 70 Issue: 7 Pages: 1458-1463

    • DOI

      10.1016/j.tet.2013.12.087

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Acanthomanzamines A-E with new manzamine frameworks from the marine sponge Acanthostrongylophora ingens.2014

    • Author(s)
      A. Furusato, H. Kato, T. Nehira, K. Eguchi, T. Kawabata, Y. Fujiwara, F. Losung, R. E. P. Mangindaan, N. J. de Voogd, M. Takeya, H. Yokosawa, S. Tsukamoto
    • Journal Title

      Org. Lett.

      Volume: 16 Issue: 15 Pages: 3888-3891

    • DOI

      10.1021/ol5015569

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Chiroptical molecular propeller based on hexakis(phenylethyl)benzene through the complexation-induced intramolecular transmission of local point chirality2014

    • Author(s)
      Ryo Katoono, Keiichi Kusaka, Shunsuke Kawai, Yuki Tanaka, Keisuke Hanada, Tatsuo Nehira, Kenshu Fujiwara, Takanori Suzuki
    • Journal Title

      Prganic and Biomolecular Chemistry

      Volume: 12 Issue: 47 Pages: 9532-9538

    • DOI

      10.1039/c4ob01601g

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] Protein conformational analysis by fluorescence-detected circular dichroism (FDCD)2015

    • Author(s)
      Tatsuo Nehira, Kaoru Ishihara, Hirone Ito, Keiko Masuda, Kazuyoshi Ukena, Koichi Matsuo, Shunsuke Izumi, Takeshi Yamazaki, Atsuhiko Ishida
    • Organizer
      Pacifichem 2015
    • Place of Presentation
      Honolulu, USA
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Potential for protein conformational analysis provided by fluorescence-detected circular dichroism (FDCD)2015

    • Author(s)
      Tatsuo Nehira, Hirone Ito, Kaoru Ishihara, Keiko Masuda, Kazuyoshi Ukena, Koichi Matsuo, Shunsuke Izumi, Takeshi Yamazaki, Atsuhiko Ishida
    • Organizer
      CD2015
    • Place of Presentation
      Sapporo, Hokkaido
    • Year and Date
      2015-08-30
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Chirality Measurement Systems for Excited State Molecules2015

    • Author(s)
      Masayuki Watanabe, Ettore Castiglioni, Takunori Harada, Tatsuo Nehira
    • Organizer
      Chirality 2015 (The 27th International Symposium on Chiral Discrimination)
    • Place of Presentation
      Boston, USA
    • Year and Date
      2015-06-28
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Chirality Measurement Systems for Excited State Molecules2015

    • Author(s)
      Masayuki Watanabe, Ettore Castiglioni, Takunori Harada, Tatsuo Nehira
    • Organizer
      MC2015 (Symposium on Molecular Chirality)
    • Place of Presentation
      Tokyo
    • Year and Date
      2015-06-12
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 蛍光検出円二色性(FDCD)分光法が可能にする タンパク質立体構造の観測2015

    • Author(s)
      17.伊藤弘音,根平達夫,石原郁,益田恵子,浮穴和義,松尾光一,泉俊輔,山﨑岳,石田敦彦
    • Organizer
      第56回 日本生化学会 中国・四国支部例会
    • Place of Presentation
      松江、島根
    • Year and Date
      2015-05-29
    • Related Report
      2015 Annual Research Report
  • [Presentation] パソコンでできるECDスペクトルシミュレーションによる有機化合物の絶対配置決定2014

    • Author(s)
      根平達夫、松尾光一、加藤光、塚本佐知子、伊藤哲朗、橋本勝
    • Organizer
      第56回天然有機化合物討論会
    • Place of Presentation
      高知
    • Year and Date
      2014-10-15 – 2014-10-17
    • Related Report
      2014 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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