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Carbon Fixation Reactions Modeling Iron/Nickel Enzymes Included in Acetyl CoA Pathway

Research Project

Project/Area Number 25410066
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Inorganic chemistry
Research InstitutionNagoya University

Principal Investigator

Matsumoto Tsuyoshi  名古屋大学, トランスフォーマティブ生命分子研究所, 准教授 (50311717)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsニッケル酵素 / アセチルCoA合成酵素 / COデヒドロゲナーゼ / 炭素固定 / モデル研究
Outline of Final Research Achievements

Model studies of CO dehydrogenase (CODH) and acetyl CoA synthase (ACS) were conducted to elucidate the unrevealed mechanism of the carbon fixation process of acetyl CoA pathway in nature. As a CODH active site model, a novel [4Fe-5S-Ni] cluster was synthesized by utilizing our unique tridentate thiolate ligands. For our model studies of ACS, a series of dinuclear nickel complexes having tetra-anionic diamido-dithiolate ligand “mbea” modeling the plausible intermediates included in the ACS catalytic pathway was synthesized, and the thioester formation reaction modeling the ACS was accomplished. The results considerably contribute to elucidate the ACS reaction mechanism, and provide clues to the development of new carbon fixation reactions.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (29 results)

All 2016 2015 2014 2013

All Journal Article (3 results) (of which Peer Reviewed: 3 results) Presentation (25 results) (of which Int'l Joint Research: 5 results,  Invited: 8 results) Book (1 results)

  • [Journal Article] “Supramolecular Porphyrin-Based Metal–Organic Frameworks with Fullerenes: Crystal Structures and Preferential Intercalation of C70”2016

    • Author(s)
      Mukae, Y.; Motegi, H.; Kajiya, S.; Yamamoto, M.; Senda, S.; Matsumoto, T.; Tatsumi, K.
    • Journal Title

      Chem. Asian J.

      Volume: 11 Issue: 5 Pages: 700-704

    • DOI

      10.1002/asia.201501422

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Heterolytic Activation of Dihydrogen Molecule by Hydroxo-/Sulfido-Bridged Rutheni um-Germanium Dinuclear Complex. Theoretical Insights2014

    • Author(s)
      N. Ochi, T. Matsumoto, T. Dei, Y. Nakao, H. Sato, K. Tatsumi, S. Sakaki
    • Journal Title

      Inorg. Chem.

      Volume: 54 Issue: 2 Pages: 576-585

    • DOI

      10.1021/ic502463y

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] [3:1] Site-Diffentiated [4Fe-4S] Clusters Having One Carboxylate and Three Thiolates.2013

    • Author(s)
      T. Terada, K. Hirabayashi, D. Liu, T. Nakamura, T. Wakimoto, T. Matsumoto, and K. Tatsumi
    • Journal Title

      Inorg. Chem

      Volume: 52 Issue: 20 Pages: 11997-12004

    • DOI

      10.1021/ic4017596

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] ナフトエ酸銅(II)-銅(II)テトラピリジルポルフィン錯体の結晶構造とガス吸蔵2016

    • Author(s)
      大村 哲賜、臼杵 有光、向江 友佑、千駄 俊介、松本 剛、巽 和行
    • Organizer
      日本化学会第96春季年会 (2016)
    • Place of Presentation
      京田辺, 同志社大学
    • Year and Date
      2016-03-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] Synthesis of Dithiolate-Bridged Iron(Carbonyl/Cyanide)-Nickel Complexes and their Reactions Modeling the [NiFe] Hydrogenase Active Site2016

    • Author(s)
      Moumita BOSE, Zilong LI, Yasuhiro OHKI, Tsuyoshi MATSUMOTO, and Kazuyuki TATSUMI
    • Organizer
      The 5th International Conference on MEXT Project of Integrated Research on Chemical Synthesis
    • Place of Presentation
      Nagoya
    • Year and Date
      2016-01-29
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] An Optimal P-Cluster Model of Nitrogenase having Sterically Demanding Thiolates2016

    • Author(s)
      Golam MOULA, Ayaka NAGASAKI, Yasuhiro OHKI, Tsuyoshi MATSUMOTO, and Kazuyuki TATSUMI
    • Organizer
      The 5th International Conference on MEXT Project of Integrated Research on Chemical Synthesis
    • Place of Presentation
      Nagoya
    • Year and Date
      2016-01-29
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Synthesis of Dithiolato-Bridged (Carbonyl/Cyano)Iron-Nickel Complexes Bearing Hydride as a model of [Ni/Fe] hydrogenase active site2016

    • Author(s)
      Zilong Li, Yasuhiro OHKI, Tsuyoshi MATSUMOTO, and Kazuyuki TATSUMI
    • Organizer
      The 5th International Conference on MEXT Project of Integrated Research on Chemical Synthesis
    • Place of Presentation
      Nagoya
    • Year and Date
      2016-01-29
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Model Studies on Acetyl CoA Synthase catalyzing CO2 fixation in organisms2015

    • Author(s)
      Tsuyoshi Matsumoto
    • Organizer
      The International Chemical Congress of Pacific Basin Societies 2015
    • Place of Presentation
      Honolulu, Hawaii
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Synthesis of [8Fe-7S] Clusters Having Sterically Demanding Thiolates: An Optimal P-Cluster Model of Nitrogenase2015

    • Author(s)
      Golam Moula, Ayaka Nagasaki, Yasuhiro Ohki, Tsuyoshi Matsumoto, Kazuyuki Tatsumi
    • Organizer
      錯体化学会第65回討論会
    • Place of Presentation
      奈良女子大学
    • Year and Date
      2015-09-21
    • Related Report
      2015 Annual Research Report
  • [Presentation] Synthesis and Reactions of Dithiolate-Bridged Heterobimetallic Iron(Carbonyl/Cyanide)-Nickel Complexes in Relevance to the Active Site of [NiFe] Hydrogenase2015

    • Author(s)
      Moumita Bose, Zilong Li, Yasuhiro Ohki, Tsuyoshi Matsumoto, Kazuyuki Tatsumi
    • Organizer
      錯体化学会第65回討論会
    • Place of Presentation
      奈良女子大学
    • Year and Date
      2015-09-21
    • Related Report
      2015 Annual Research Report
  • [Presentation] Dithiolato-Bridged (Carbonyl/Cyano)Iron-Nickel Complexes Bearing Hydride as a Model of [NiFe]Hydrogenase Active Site2015

    • Author(s)
      李 子龍・大木 靖弘・松本 剛 ・巽 和行
    • Organizer
      錯体化学会第65回討論会
    • Place of Presentation
      奈良女子大学
    • Year and Date
      2015-09-21
    • Related Report
      2015 Annual Research Report
  • [Presentation] 酢酸銅(II)-テトラピリジルポルフィン錯体の C70 分子認識能2015

    • Author(s)
      大村 哲賜・臼杵 有光・千駄 俊介・松本 剛・巽 和行
    • Organizer
      錯体化学会第65回討論会
    • Place of Presentation
      奈良女子大学
    • Year and Date
      2015-09-21
    • Related Report
      2015 Annual Research Report
  • [Presentation] Model Studies on Acetyl CoA Synthase2015

    • Author(s)
      Tsuyoshi Matsumoto
    • Organizer
      6th International IMBG Meeting, Chemistry & Biology of Iron-Sulfur Clusters
    • Place of Presentation
      Villard de Lans, France
    • Year and Date
      2015-09-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Model Studies on Acetyl CoA Synthase: Structures and Reaction Mechanism2015

    • Author(s)
      T. Matsumoto
    • Organizer
      UC Irvine Bioinorganic Lecture Series
    • Place of Presentation
      Irvine, CA, USA
    • Year and Date
      2015-02-12
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] アセチルCoA合成酵素の反応中間体モデルとなるジアミドジチオラート型mbea配位子をもつ二核ニッケル錯体の合成と反応2014

    • Author(s)
      大須 理恵・大木 靖弘・唯 美津木・巽 和行・松本 剛
    • Organizer
      錯体化学会 第64回討論会
    • Place of Presentation
      東京
    • Year and Date
      2014-09-18 – 2014-09-20
    • Related Report
      2014 Research-status Report
  • [Presentation] かさ高いterphenyl 基をリン上に導入したジホスフィン配位子を有する単核ニッケル錯体の合成と反応2014

    • Author(s)
      鈴木 宏徳・唯 美津木・大木 靖弘・松本 剛
    • Organizer
      錯体化学会 第64回討論会
    • Place of Presentation
      東京
    • Year and Date
      2014-09-18 – 2014-09-20
    • Related Report
      2014 Research-status Report
  • [Presentation] Synthesis and Reaction of Dinuclear Nickel Complexes Modeling Intermediates in the Enzymatic Cycle of Acetyl CoA Synthase2014

    • Author(s)
      R. Osu, Y. Ozawa, Y. Ohki, T. Matsumoto, K. Tatsumi
    • Organizer
      XXXVI International Conference on Organometallic Chemistry (ICOMC 2014)
    • Place of Presentation
      札幌
    • Year and Date
      2014-07-13 – 2014-07-18
    • Related Report
      2014 Research-status Report
  • [Presentation] Synthesis of [3:1] Site-Differentiated [4Fe-4S] Clusters Functioning in Biological System2014

    • Author(s)
      T. Matsumoto
    • Organizer
      Bioinogranic Group Seminar, University of Freiburg
    • Place of Presentation
      Freiburg, Germany
    • Year and Date
      2014-07-04
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Model Studies on Nickel Enzymes Playing Key Roles in Autotrophic Carbon Fixation2014

    • Author(s)
      T. Matsumoto
    • Organizer
      EMTECH, Universiti Putra Malaysia (UPM) – University Of Hyogo (UH), Japan Joint Colloquium 2014
    • Place of Presentation
      Putra, Malaysia
    • Year and Date
      2014-05-26 – 2014-05-27
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] My Career Path2014

    • Author(s)
      T. Matsumoto
    • Organizer
      SOKENDAI Physical Science Student Seminar AY2013
    • Place of Presentation
      Okazaki
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 三座チオラート配位子をもつ鉄硫黄クラスターへのニッケル錯体の導入:COデヒドロゲナーゼ活性中心モデルの構築2014

    • Author(s)
      田中香帆、寺田玲季、松本剛、巽和行
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋
    • Related Report
      2013 Research-status Report
  • [Presentation] アセチルCoA合成酵素の中間体モデルとなるジアミドジチオラート型mbea配位子を持つ二核ニッケル錯体2014

    • Author(s)
      大須理恵、小澤由佳、唯美津木、大木靖弘、巽和行、松本剛
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋
    • Related Report
      2013 Research-status Report
  • [Presentation] Model Studies on Nickel Enzymes Relevant to Autotrophic Carbon Fixation2013

    • Author(s)
      T. Matsumoto
    • Organizer
      The 15th Joint Semiar University of Münster-Nagoya University
    • Place of Presentation
      Nagoya
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Synthesis of [Ni-Ni] and [Ni-S-Fe4S4] Complexes Modeling Acetyl CoA Synthase Active Site2013

    • Author(s)
      T. Matsumoto, R. Osu, Y. Ozawa, T. Terada, K. Tanaka, K. Tatsumi
    • Organizer
      16th International Conference on Biological Inorganic Chemistry (ICBIC16)
    • Place of Presentation
      Grenoble, France
    • Related Report
      2013 Research-status Report
  • [Presentation] 嫌気性生物の炭素固定に関わる金属酵素のモデル研究2013

    • Author(s)
      松本 剛
    • Organizer
      錯体化学若手の会夏の学校2013
    • Place of Presentation
      札幌
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] アセチルCoA 合成酵素の反応中間体モデルとなるメチル基とチオラートを併せもつ二核ニッケル錯体2013

    • Author(s)
      大須理恵、小澤由佳、松本剛、巽和行
    • Organizer
      錯体化学会第63回討論会
    • Place of Presentation
      沖縄
    • Related Report
      2013 Research-status Report
  • [Presentation] 三座チオラート配位子を導入した[1:3]不均等配位[4Fe-4S]クラスターおよびCOデヒドロゲナーゼ活性中心モデルの合成2013

    • Author(s)
      田中香帆、中村友彦、寺田玲季、松本剛、巽和行
    • Organizer
      錯体化学会第63回討論会
    • Place of Presentation
      沖縄
    • Related Report
      2013 Research-status Report
  • [Presentation] 三座チオラート配位子とクロリドが配位した[4Fe-4S]2+クラスターと水素化ホウ素ナトリウムの反応2013

    • Author(s)
      寺田玲季、松本剛、巽和行
    • Organizer
      錯体化学会第63回討論会
    • Place of Presentation
      沖縄
    • Related Report
      2013 Research-status Report
  • [Book] 科学の健全な発展のために2015

    • Author(s)
      日本学術振興会「科学の健全な発展のために」編集委員会
    • Total Pages
      141
    • Publisher
      丸善出版
    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-07-25   Modified: 2019-07-29  

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