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Multidimension polyacrylamide gel electrophoresis oriented toward the identification of metalloproteins

Research Project

Project/Area Number 25410139
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Analytical chemistry
Research InstitutionSaitama University

Principal Investigator

SAITO Shingo  埼玉大学, 理工学研究科, 准教授 (60343018)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2015: ¥520,000 (Direct Cost: ¥400,000、Indirect Cost: ¥120,000)
Fiscal Year 2014: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2013: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Keywordsメタロミクス / 金属タンパク質 / 電気泳動 / スペシエーション / ゲル電気泳動
Outline of Final Research Achievements

Although investigation of metalloproteins is of importance to realize the relationship between metal ion and biological behavior, identification of metalloproteins is difficult. Here, we have developed three types of new polyacrylamide gel electrophoresis (PAGE) specific to metalloproteins and protein-bound metal ions in biological samples: metal ion contaminant sweeping (MICS)-Blue Native (BN)-PAGE; metal ion detection PAGE; and holo-apo conversion two dimensional MICS-PAGE.
In MICS-BN-PAGE, all metal contaminants were excluded from the gel, the separation buffer and the instruments, resulting in protein separation under metal-free conditions. In metal detection PAGE, metal ions (Fe, Cu and others) were separated and fluorescently detected with high sensitivity (to the ppt level) by the addition of probes. In holo-apo conversion 2D MICS-BN-PAGE, metalloproteins were exclusively isolated off of the diagonal line.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (34 results)

All 2016 2015 2014 2013 Other

All Journal Article (10 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 9 results,  Open Access: 3 results,  Acknowledgement Compliant: 3 results) Presentation (23 results) (of which Int'l Joint Research: 5 results,  Invited: 8 results) Remarks (1 results)

  • [Journal Article] Rapid acquisition of high-affinity DNA aptamer motifs recognizing microbial cell surfaces using polymer-enhanced capillary transient isotachophoresis2016

    • Author(s)
      Saito, S., Hirose, K., Tsuchida, M., Wakui, K., Yoshimoto, K., Nishiyama, Y. and Shibukawa, M.
    • Journal Title

      Chem. Commun.

      Volume: 52(3) Issue: 3 Pages: 461-4

    • DOI

      10.1039/c5cc07268a

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] c-type Cytochrome Assembly is a Key Target of Copper Toxicity within the Bacterial Periplasm2015

    • Author(s)
      Anne Durand, Asma Azzouzi, Marie-Line Bourbon, Anne-Soisig Steunou, Sylviane Liotenberg, Akinori Maeshima, Chantal Astier, Manuela Argentini, Shingo Saito, Soufian Ouchane
    • Journal Title

      mBio

      Volume: 6 Issue: 5

    • DOI

      10.1128/mbio.01007-15

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Affinity Capillary Electrophoresis for Selective Control of Electrophoretic Mobility of Sialic Acid Using Lanthanide–Hexadentate Macrocyclic Polyazacarboxylate Complexes2015

    • Author(s)
      Daiki Goto, Kazuki Ouchi, Masami Shibukawa, Shingo Saito
    • Journal Title

      Analytical Sciences

      Volume: 31 Issue: 11 Pages: 1143-1149

    • DOI

      10.2116/analsci.31.1143

    • NAID

      130005108607

    • ISSN
      0910-6340, 1348-2246
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Combining capillary electrophoresis and next-generation sequencing for aptamer selection2015

    • Author(s)
      K. R. Riley, J. Gagliano, J. Xiao, K. Libby, S. Saito, G. Yu, R. Cubicciotti, J. Macosko, C. L. Colyer, M. Guthold, K. Bonin
    • Journal Title

      Analytical and Bioanalytical Chemistry

      Volume: 407 Issue: 6 Pages: 1527-1532

    • DOI

      10.1007/s00216-014-8427-y

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Molecular Design of Boronic Acid-Functionalized Squarylium Cyanine Dyes for Multiple Discriminant Analysis of Sialic Acid in Biological Samples: Selectivity Toward Monosaccharides Controlled by Different Alkyl Side Chain Lengths2015

    • Author(s)
      Kazuki Ouchi, Christa L. Colyer, Mahmoud Sebaiy, Jin Zhou, Takeshi Maeda, Hiroyuki Nakazumi, Masami Shibukawa, Shing Saito
    • Journal Title

      Analytical Chemistry

      Volume: 87 Issue: 3 Pages: 1933-1940

    • DOI

      10.1021/ac504201b

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Application of Capillary Electrophoresis with Laser-induced Fluorescence Detection for the Determination of Trace Neodymium in Spent Nuclear Fuel Using Complexation with an Emissive Macrocyclic Polyaminocarboxylate Probe2014

    • Author(s)
      Tomoko HARAGA, Shingo SAITO, Yoshiyuki SATO, Shiho ASAI, Yukiko HANZAWA, Hitoshi HOSHINO, Masami SHIBUKAWA, Ken-ichiro ISHIMORI, Kuniaki TAKAHASHI
    • Journal Title

      Analytical Sciences

      Volume: 30 Issue: 7 Pages: 773-776

    • DOI

      10.2116/analsci.30.773

    • NAID

      130004442319

    • ISSN
      0910-6340, 1348-2246
    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Mapping of protein-bound metal ions using novel polyacrylamide electrophoresis2014

    • Author(s)
      齋藤伸吾
    • Journal Title

      SEIBUTSU BUTSURI KAGAKU

      Volume: 58 Issue: 2 Pages: 24-26

    • DOI

      10.2198/sbk.58.24

    • NAID

      130004704677

    • ISSN
      0031-9082, 1349-9785
    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] 電気泳動法をプラットフォームとするタンパク質結合型金属イオンの分布測定法2014

    • Author(s)
      齋藤伸吾
    • Journal Title

      化学工業

      Volume: 66 Pages: 21-27

    • Related Report
      2014 Research-status Report
  • [Journal Article] Separation of metalloproteins using a novel metal ion contaminant sweeping technique and detection of protein-bound copper by a metal ion probe in polyacrylamide gel electrophoresis: distribution of copper in human serum2013

    • Author(s)
      Shingo Saito, Mitsuyoshi Kawashima, Hiroki Ohshima, Kazuki Enomoto, Makoto Sato, Hajime Yoshimura, Keitaro Yoshimoto, Mizuho Maeda, Masami Shibukawa
    • Journal Title

      Analyst

      Volume: 138 Issue: 20 Pages: 6097-6105

    • DOI

      10.1039/c3an01107k

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] A New Molecular Motif for Recognizing Sialic Acid Using Emissive Lanthanide-Macrocyclic Polyazacarboxylate Complexes: Acid-Dissociation of A Coordinated Water Molecule Controls Selectivity2013

    • Author(s)
      Kazuki Ouchi, Shingo Saito, Masami Shibukawa
    • Journal Title

      Inorganic Chemistry

      Volume: 52 Issue: 11 Pages: 6239-6242

    • DOI

      10.1021/ic400725a

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] 発見を目指す電気泳動分離分析2016

    • Author(s)
      齋藤伸吾
    • Organizer
      日本化学会北海道支部北見地区化学講演会
    • Place of Presentation
      北見工業大学(北海道,北見市)
    • Year and Date
      2016-01-26
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Polyacrylamide gel electrophoresis oriented toward the identification of metalloproteins2015

    • Author(s)
      Shingo Saito
    • Organizer
      PACIFICHEM2015(The International Chemical Congress of Pacific Basin Societies)
    • Place of Presentation
      Hawaii Convention Center, Honolulu, Hawaii, USA
    • Year and Date
      2015-12-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] New approach toward fast and efficient DNA aptamer selection for microbial cells using polymer-enhanced capillary transientisotachophoresis2015

    • Author(s)
      Kazuki Hirose, Maho Tsuchida, Keitaro Yoshimoto, Christa Colyer, Masami Shibukawa, Shingo Saito
    • Organizer
      PACIFICHEM2015(The International Chemical Congress of Pacific Basin Societies)
    • Place of Presentation
      Hawaii Convention Center, Honolulu, Hawaii, USA
    • Year and Date
      2015-12-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Evaluating the selectivity of functionalized squarylium cyanine dyes towards saccharides and sialic acids2015

    • Author(s)
      Christa Colyer, Kazuki Ouchi, Takeshi Maeda, Hiroyuki Nakazumi, Masami Shibukawa, Shingo Saito
    • Organizer
      PACIFICHEM2015(The International Chemical Congress of Pacific Basin Societies)
    • Place of Presentation
      Hawaii Convention Center, Honolulu, Hawaii, USA
    • Year and Date
      2015-12-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 高分子増強過渡的等速電気泳動法によって選抜した細菌に選択的なDNAアプタマーの配列特性2015

    • Author(s)
      土田真帆,廣瀬和生,吉本敬太郎,齋藤伸吾,渋川雅美
    • Organizer
      第5回 CSJ化学フェスタ2015
    • Place of Presentation
      タワーホール船堀(東京都,江戸川区)
    • Year and Date
      2015-10-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] 高分子増強過渡的等速電気泳動法とカウンター選抜による真菌に対するDNAアプタマーの効率的選抜法の開発2015

    • Author(s)
      土田真帆,廣瀬和生,吉本敬太郎,齋藤伸吾,渋川雅美
    • Organizer
      日本分析化学会第64年会
    • Place of Presentation
      九州大学(福岡県,福岡市)
    • Year and Date
      2015-09-09
    • Related Report
      2015 Annual Research Report
  • [Presentation] 汚染金属イオンスウィーピングPAGE/銅イオン検出PAGEを用いる種々の銅結合性タンパク質の分析2015

    • Author(s)
      植木晃宏,齋藤伸吾,前島明典,渋川雅美
    • Organizer
      第66回日本電気泳動学会総会
    • Place of Presentation
      東京工科大学(東京都,八王子市)
    • Year and Date
      2015-09-05
    • Related Report
      2015 Annual Research Report
  • [Presentation] Fluorescence sensing of saccharides using boronic acid functionalized squarylium dyes and their applications to analytical methods2015

    • Author(s)
      Shingo Saito, Takeshi Maeda, Hiroyuki Nakazumi, Christa L. Colyer
    • Organizer
      The 7th East Asia Symposium on Functional Dyes and Advanced Materials (EAS7)
    • Place of Presentation
      大阪府立大(大阪府,堺市)
    • Year and Date
      2015-09-03
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Safe and rapid analytical methods for actinide ions and radioactive Sr-90 in high-dose radiation samples using fluorescent probes in capillary electrophoresis2015

    • Author(s)
      Tomoko Haraga, Yuta Nakano, Yoshiyuki Sato, Kazuki Ohuchi, Kazuki Hirose, Masami Shibukawa, Ken-ichiro Ishimori, Yutaka Kameo, Shingo Saito
    • Organizer
      The 7th International Conference on Green and Sustainable Chemistry
    • Place of Presentation
      一橋大学(東京都,国立市)
    • Year and Date
      2015-07-07
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] キャピラリー電気泳動法を用いる大腸菌に対するDNAアプタマー拘束選抜技術の開発とその特性評価2015

    • Author(s)
      廣瀬和生,吉本敬太郎,齋藤伸吾,渋川雅美
    • Organizer
      第75回分析化学討論会
    • Place of Presentation
      山梨大学(山梨県,山梨市)
    • Year and Date
      2015-05-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] 生体試料中シアル酸の多変量判別分析用ボロン酸修飾型スカリリウム色素の開発2015

    • Author(s)
      大内和希,齋藤伸吾,前田壮志,中澄博行,Colyer Christa L.,渋川雅美
    • Organizer
      日本化学会第95春季年会2015
    • Place of Presentation
      日大薬学部(千葉県,船橋市)
    • Year and Date
      2015-03-28
    • Related Report
      2014 Research-status Report
  • [Presentation] 電気泳動分離場で機能する蛍光プローブ2015

    • Author(s)
      齋藤伸吾
    • Organizer
      「分離機能とセンシング機能の化学」セミナー2015
    • Place of Presentation
      東北大学片平キャンパス(宮城県,仙台市)
    • Year and Date
      2015-03-07
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] A New Approach of DNA Aptamer Selection for Microbe Cells Using Polymer-Enhanced Capillary Transient Isotachophoresis2014

    • Author(s)
      Shingo Saito, Kazuki Hirose, Maho Tsuchida, Masami Shibukawa
    • Organizer
      14th Asia-Pacific International Symposium on Microscale Separations and Analysis (APCE2014)
    • Place of Presentation
      京都大学(京都府,京都市)
    • Year and Date
      2014-12-09 – 2014-12-10
    • Related Report
      2014 Research-status Report
  • [Presentation] キャピラリー電気泳動を用いる細菌に特異的なDNAアプタマーの高速選抜法の開発2014

    • Author(s)
      齋藤伸吾
    • Organizer
      第2回 混相流に関する最先端科学技術シンポジウム
    • Place of Presentation
      東京大学浅野キャンパス(東京都文京区)
    • Year and Date
      2014-11-14
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] タンパク質結合型金属イオンのポリアクリルアミドゲル電気泳動によるマッピング2014

    • Author(s)
      齋藤伸吾
    • Organizer
      第65回日本電気泳動学会総会
    • Place of Presentation
      横浜情報文化センター(神奈川県,横浜市)
    • Year and Date
      2014-10-24 – 2014-10-25
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Selection of DNA Aptamer for Bacterial Cell using Polymer-enhanced Capillary Transient Isotachophoresis2014

    • Author(s)
      Shingo Saito
    • Organizer
      1st Asian Symposium on Analytical Sciences
    • Place of Presentation
      広島大学(広島県,広島市)
    • Year and Date
      2014-09-17 – 2014-09-18
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] キャピラリー電気泳動法を用いる濃縮-分離-精密分取システム:環境物質および生体物質への応用2014

    • Author(s)
      齋藤伸吾
    • Organizer
      首都圏北部4大学発 新技術説明会(JST)
    • Place of Presentation
      JST東京別館ホール(東京都,千代田区)
    • Year and Date
      2014-06-20
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 複数のフェニルボロン酸修飾型スカリリウム色素群によるを用いるパターンベースシアル酸の蛍光応答パターン認識2014

    • Author(s)
      大内和希,齋藤伸吾,前田壮志,中澄博行,Christa L. Colyer,渋川雅美
    • Organizer
      第74回分析化学討論会
    • Place of Presentation
      日本大学工学部(福島県,福島市)
    • Year and Date
      2014-05-24 – 2014-05-25
    • Related Report
      2014 Research-status Report
  • [Presentation] Capillary electrophoresis with laser-induced fluorescence detection for ultratrace uranyl ion using a highly emissive phenanthroline-dicarboxylate- derivative probes2014

    • Author(s)
      Tomoko Haraga, Yoshiyuki Sato, Kazuki Ohuchi, Masami Shibukawa, Ken-ichiro Ishimori, Kameo Yutaka, Shingo Saito
    • Organizer
      41st International Symposium on High Performance Liquid Pahse Separations and Related Techniques (HPLC2014)
    • Place of Presentation
      Hilton New Orleans Riverside, New Orleans, LA, USA
    • Year and Date
      2014-05-11 – 2014-05-15
    • Related Report
      2014 Research-status Report
  • [Presentation] Protein-Copper Ion Mapping of Human Serum Using a Novel Metal Ion Contaminant Sweeping Technique and Fluorescent Metal Probe in Polyaminocarboxylate Gel Electrophoresis2013

    • Author(s)
      Shingo Saito, Mitsuyoshi Kawashima, Makoto Sato, Masami Shibukawa
    • Organizer
      39th International Symposium on High Performance Liquid Phase Separations and Related Techniques (HPLC2013)
    • Place of Presentation
      RAI, Amsterdam, Netherland
    • Related Report
      2013 Research-status Report
  • [Presentation] 汚染金属イオンスウィーピング法を用いる金属タンパク質のゲル電気泳動分離:血清中アルブミン結合型銅イオンの定量2013

    • Author(s)
      前島明典,齋藤伸吾,川島光喜,佐藤誠,渋川雅美
    • Organizer
      金属の関与する生体関連シンポジウム(SRM2013)
    • Place of Presentation
      武蔵野大学
    • Related Report
      2013 Research-status Report
  • [Presentation] 新規蛍光プローブによる放射性廃棄体中および環境微生物中の重金属イオンの超高感度電気泳動法の開発2013

    • Author(s)
      齋藤伸吾
    • Organizer
      堀場雅夫賞授賞式 受賞講演
    • Place of Presentation
      京都大学芝蘭会館
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 汚染金属イオンスウィーピングPAGE/金属検出PAGEによるヒト血清中銅イオン分布の解明2013

    • Author(s)
      齋藤伸吾,川島光喜,渋川雅美
    • Organizer
      キャピラリー電気泳動シンポジウム(SCE2013)
    • Place of Presentation
      日本女子大学
    • Related Report
      2013 Research-status Report
  • [Remarks] 渋川研究室の研究紹介ページ

    • URL

      http://www.apc.saitama-u.ac.jp/bunseki/Research.html

    • Related Report
      2015 Annual Research Report

URL: 

Published: 2014-07-25   Modified: 2019-07-29  

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