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Regulation of photochemical reaction by grapheme oxide and its application to gene analysis

Research Project

Project/Area Number 25410146
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Analytical chemistry
Research InstitutionKumamoto University

Principal Investigator

Kitamura Yusuke  熊本大学, 自然科学研究科, 助教 (80433019)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2015: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2014: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2013: ¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
KeywordsDNA / グラフェン / バイオセンサー / 遺伝子解析 / 光化学反応 / 酸化グラフェン
Outline of Final Research Achievements

Partially oxidized graphene (graphene oxide, GO) is an atomically thin, two-dimensional sheet that contains nanometer-scale graphene-like sp2 domains in an amorphous sp3 carbon matrix. It can strongly adsorb single-stranded DNA (ssDNA) via non-covalent hydrophobic and π-stacking interactions with the exposed nucleobases. Meanwhile, GO affinity for double-stranded DNA is much lower because the nucleobases are shielded inside the hydrophilic double helix backbone. GO is also a very effective fluorescence quencher owing to its efficient, long-range energy transfer properties.
In this research, fluorescent-dye-labeled probe DNA was immobilized on fluorescence-quenching graphene oxide (GO) through a capture DNA. When targets were added, the probes were released from the GO through toehold-mediated strand exchange. Higher emission recovery and more signal contrast were achieved relative to conventional methods that are based on direct adsorption of probes.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (35 results)

All 2016 2015 2014 2013

All Journal Article (10 results) (of which Peer Reviewed: 10 results,  Acknowledgement Compliant: 3 results,  Open Access: 2 results) Presentation (24 results) (of which Int'l Joint Research: 3 results,  Invited: 1 results) Book (1 results)

  • [Journal Article] Graphene Oxide-based Amplified Fluorescence Sensor for Nucleic Acid Detection through Target-catalyzed Hairpin Assembly2015

    • Author(s)
      Y. Kitamura, T. Miyahata, H. Matsuura, K. Hatakeyama, T. Taniguchi, M. Koinuma, Y. Matsumoto, T. Ihara
    • Journal Title

      Chemistry Letters

      Volume: 44 Issue: 10 Pages: 1353-1355

    • DOI

      10.1246/cl.150564

    • NAID

      130005101443

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Oxide: A Fertile Nanosheet for Various Applications2015

    • Author(s)
      S. Obata, K. Saiki, T. Taniguchi, T. Ihara, Y. Kitamura, and Y. Matsumoto
    • Journal Title

      J. Phys. Soc. Jpn.

      Volume: 84 Issue: 12 Pages: 121012-121029

    • DOI

      10.7566/jpsj.84.121012

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Metal Ion-directed Dynamic Splicing of DNA through Global Conformational Change by Intramolecular Complexation2015

    • Author(s)
      T. Ihara, H. Ohura, C. Shirahama, T. Furuzono, H. Shimada, H. Matsuura, Y. Kitamura
    • Journal Title

      Nature Communications

      Volume: 6 Issue: 1 Pages: 6640-6640

    • DOI

      10.1038/ncomms7640

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Alteration of DNAzyme Activity by Silver Ion2014

    • Author(s)
      S. Urata, T. Miyahata, H. Matsuura, Y. Kitamura, T. Ihara
    • Journal Title

      Chemistry Letters

      Volume: 43 Issue: 7 Pages: 1020-1022

    • DOI

      10.1246/cl.140197

    • NAID

      130004868237

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] 酸化グラフェン上でのDNA鎖交換反応を利用した高選択的核酸検出システムの開発2014

    • Author(s)
      宮端孝明, 北村裕介, 二村朱香, 松浦博孝, 畠山一翔, 鯉沼陸央, 松本泰道, 井原敏博
    • Journal Title

      ナノ学会会報

      Volume: 12 Pages: 63-67

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Potentiometric DNA Sensing Platform Using Redox-Active DNA Probe Pair for Sandwich-Type Dual Hybridization at Indicator Electrode Surface2014

    • Author(s)
      K. Nakano, T. Kimura, Y. Kitamura, T. Ihara, R. Ishimatsu, T. Imato
    • Journal Title

      Journal of Electroanalytical Chemistry

      Volume: 720-721 Pages: 71-75

    • DOI

      10.1016/j.jelechem.2014.03.029

    • Related Report
      2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] In Situ Oxygenous Functionalization of a Graphite Electrode for Enhanced Affinity toward Charged Species and a Reduced Graphene Oxide Mediator2014

    • Author(s)
      M. R. Karim, Y. Ikeda, T. Ide, S. Sugito, K. Toda, YM. R. Karim, Y. Ikeda, T. Ide, S. Sugimoto, K. Toda, Y. Kitamura, T. Ihara, T. Matsui, T. Tani. Kitamura, T. Ihara, T. Matsui, T. Taniguchi, M. Koinuma, Y. Matsumoto, S. Hayami
    • Journal Title

      New Journal of Chemistry

      Volume: 38 Issue: 5 Pages: 2120-2127

    • DOI

      10.1039/c3nj01471a

    • Related Report
      2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] DNA analysis based on toehold-mediated strand displacement on graphene oxide2013

    • Author(s)
      Takaaki Miyahata, Yusuke Kitamura, Akika Futamura, Hirotaka Matsuura, Kazuto Hatakeyama, Michio Koinuma, Yasumichi Matsumoto and Toshihiro Ihara
    • Journal Title

      Chemical Communications

      Volume: 49 Issue: 86 Pages: 10139-10141

    • DOI

      10.1039/c3cc45531a

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Development of Novel Nucleic Acid Probes Based on the Template-directed Formation and Interaction of Metal Complexes2013

    • Author(s)
      北村 裕介, 井原 敏博
    • Journal Title

      BUNSEKI KAGAKU

      Volume: 62 Issue: 9 Pages: 793-810

    • DOI

      10.2116/bunsekikagaku.62.793

    • NAID

      10031186094

    • ISSN
      0525-1931
    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Metallo-regulation of the bimolecular triplex formation of a peptide nucleic acid.2013

    • Author(s)
      Shimada H, Sakurai T, Kitamura Y, Matsuura H, Ihara T
    • Journal Title

      Dalton Trans.

      Volume: 42(45) Issue: 45 Pages: 16006-13

    • DOI

      10.1039/c3dt51386f

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Highly Sensitive Biosensor Based on Graphene Oxide2016

    • Author(s)
      Takaaki Miyahata, Tomoya Matsuo, Yusuke Kitamura, Toshihiro Ihara
    • Organizer
      日本化学会第96春季年会2016
    • Place of Presentation
      同志社大学
    • Year and Date
      2016-03-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] GO-based Nucleic Acids Sensor Amplified with DNA Circuit2015

    • Author(s)
      Takaaki Miyahata, Tomoya Matsuo, Yusuke Kitamura, Toshihiro Ihara
    • Organizer
      The 42nd International Symposium on Nucleic Acid Chemistry
    • Place of Presentation
      I-messae hall, Himeji
    • Year and Date
      2015-09-23
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Reversible formation of Nanosheet Assemblies through Toehold-mediated DNA Strand Exchange2015

    • Author(s)
      Tomoya Matsuo, Takaaki Miyahata, Yusuke Kitamura, Kazuto Hatakeyama, Michio Koinuma, Yasumichi Matsumoto, Toshihiro Ihara
    • Organizer
      Japan-the Netherlands Symposium on Soft-Tribology
    • Place of Presentation
      Kumamoto University
    • Year and Date
      2015-09-10
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Takaaki Miyahata, Yusuke Kitamura, Hirotaka Matsuura, Kazuto Hatakeyama, Takaaki Taniguchi, Michio Koinuma, Yasumichi Matsumoto, Toshihiro Ihara2015

    • Author(s)
      Graphene Oxide-Based Nucleic Acids Sensor Combined with Enzymatic Signal Amplification
    • Organizer
      Japan-the Netherlands Symposium on Soft-Tribology
    • Place of Presentation
      Kumamoto University
    • Year and Date
      2015-09-10
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 無機ナノシートと核酸の相互作用の解析およびその遺伝子センサーへの応用2015

    • Author(s)
      宮端孝明、松尾朋弥、北村裕介、井原敏博
    • Organizer
      第52回化学関連支部合同九州大会
    • Place of Presentation
      北九州国際会議場
    • Year and Date
      2015-06-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] Signal Amplification in Gene Analysis Based on Graphene Oxide and DNA Circuit2015

    • Author(s)
      Takaaki Miyahata, Tomoya Matsuo, Yusuke Kitamura, Toshihiro Ihara
    • Organizer
      日本化学会第95春季年会2015
    • Place of Presentation
      日本大学船橋キャンパス
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Research-status Report
  • [Presentation] 酸化グラフェン上でのDNA鎖交換連鎖反応を利用したシグナル増幅型核酸センサー2014

    • Author(s)
      宮端孝明、二村朱香、北村裕介、井原敏博
    • Organizer
      第3回酸化グラフェンシンポジウム
    • Place of Presentation
      東工大キャンパスイノベーションセンター
    • Year and Date
      2014-12-18
    • Related Report
      2014 Research-status Report
  • [Presentation] 核酸を連結素子とするナノシート会合対形成に関する基礎研究2014

    • Author(s)
      松尾朋弥、二村朱香、北村裕介、井原敏博
    • Organizer
      第3回酸化グラフェンシンポジウム
    • Place of Presentation
      東工大キャンパスイノベーションセンター
    • Year and Date
      2014-12-18
    • Related Report
      2014 Research-status Report
  • [Presentation] Graphene oxide-based DNA sensor with catalytic signal amplification2014

    • Author(s)
      Yusuke Kitamura, Hiroyuki Ohura, Toshihiro Ihara
    • Organizer
      The 41st International Symposium on Nucleic Acid Chemistry
    • Place of Presentation
      北九州国際会議場
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Research-status Report
  • [Presentation] 酸化グラフェン上でのDNA鎖交換反応を利用したシグナル増幅型核酸分析法の開発2014

    • Author(s)
      北村裕介、宮端孝明、松尾朋弥、井原敏博
    • Organizer
      日本分析化学会第63年会
    • Place of Presentation
      広島大学
    • Year and Date
      2014-09-17 – 2014-09-19
    • Related Report
      2014 Research-status Report
  • [Presentation] 酸化グラフェンを用いたシグナル増幅型核酸検出法の開発2014

    • Author(s)
      北村裕介、宮端孝明、井原敏博
    • Organizer
      第8回バイオ関連化学シンポジウム
    • Place of Presentation
      岡山大学
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Research-status Report
  • [Presentation] 鎖交換反応を利用したシグナル増幅型遺伝子センサーの開発2014

    • Author(s)
      宮端孝明、松尾朋弥、北村裕介、井原敏博
    • Organizer
      第8回バイオ関連化学シンポジウム
    • Place of Presentation
      岡山大学
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Research-status Report
  • [Presentation] Signal amplification in DNA sensing using toehold mediated strand exchange on graphene oxide2014

    • Author(s)
      Takaaki Miyahata, Tomoya Matsuo, Yusuke Kitamura, Toshihiro Ihara
    • Organizer
      RSC Tokyo International Conference 2014
    • Place of Presentation
      幕張メッセ
    • Year and Date
      2014-09-04
    • Related Report
      2014 Research-status Report
  • [Presentation] 酸化グラフェンを用いたシグナル増幅型核酸センサーの開発2014

    • Author(s)
      宮端孝明、北村裕介、井原敏博
    • Organizer
      第26回生体機能関連化学若手のサマースクール
    • Place of Presentation
      ラフォーレ蔵王
    • Year and Date
      2014-07-25
    • Related Report
      2014 Research-status Report
  • [Presentation] 酸化グラフェン上での鎖交換反応を利用したシグナル増幅型核酸センサーの開発2014

    • Author(s)
      宮端孝明、二村朱香、北村裕介、井原敏博
    • Organizer
      第51回化学関連支部合同九州大会
    • Place of Presentation
      北九州国際会議場
    • Year and Date
      2014-06-28
    • Related Report
      2014 Research-status Report
  • [Presentation] 酸化グラフェンとDNAの相互作用に関する基礎的研究および遺伝子センサーへの応用2014

    • Author(s)
      宮端孝明、松尾朋弥、北村裕介、井原敏博
    • Organizer
      第2回酸化グラフェンシンポジウム
    • Place of Presentation
      熊本大学工学部百周年記念館
    • Year and Date
      2014-06-24
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 酸化グラフェン上に固定化したDNAの鎖交換反応による高選択的放出2014

    • Author(s)
      宮端孝明、二村朱香、北村裕介、井原敏博
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学東山キャンパス
    • Related Report
      2013 Research-status Report
  • [Presentation] DNA analysis based on toehold-mediated strand exchange on graphene oxide2014

    • Author(s)
      Takaaki Miyahata, Chiharu Imoto, Tomohiro Matsuo, Yusuke Kitamura, Toshihiro Ihara
    • Organizer
      1st. International Symposium on Graphene oxide
    • Place of Presentation
      熊本大学工学部百周年記念館
    • Related Report
      2013 Research-status Report
  • [Presentation] 酸化グラフェン上での鎖交換反応を利用した新規DNA検出法の開発2013

    • Author(s)
      北村 裕介、宮端 孝明、井原 敏博
    • Organizer
      第7回バイオ関連化学シンポジウム
    • Place of Presentation
      名古屋大学豊田講堂
    • Related Report
      2013 Research-status Report
  • [Presentation] Sequence-specific release of the immobilized DNA from the surface of graphene oxide through toehold-mediated strand exchange2013

    • Author(s)
      Yusuke Kitamura, Takaaki Miyahata, Toshihiro Ihara
    • Organizer
      第40回国際核酸化学シンポジウム
    • Place of Presentation
      神奈川大学
    • Related Report
      2013 Research-status Report
  • [Presentation] 酸化グラフェン上でのDNA鎖交換反応とその遺伝子解析への応用2013

    • Author(s)
      宮端孝明、二村朱香、吉村晶大、北村裕介、井原敏博
    • Organizer
      第50回化学関連支部合同九州大会
    • Place of Presentation
      北九州市小倉北区浅野北九州国際会議場
    • Related Report
      2013 Research-status Report
  • [Presentation] Sequence-Specific DNA Adsorption and Desorption on Graphene Oxide through Toehold-Mediated Strand Exchange2013

    • Author(s)
      Takaaki Miyahata, Akika Futamura, Yusuke Kitamura, Toshihiro Ihara
    • Organizer
      ASIANALYSIS XII
    • Place of Presentation
      九州大学馬出キャンパス
    • Related Report
      2013 Research-status Report
  • [Presentation] 酸化グラフェンとDNAの相互作用およびセンシングへの応用2013

    • Author(s)
      宮端孝明、井元千春、吉村晶大、北村裕介、井原敏博
    • Organizer
      酸化グラフェンシンポジウム
    • Place of Presentation
      熊本大学工学部
    • Related Report
      2013 Research-status Report
  • [Presentation] 酸化グラフェン上での配列特異的DNA鎖交換反応2013

    • Author(s)
      宮端孝明、二村朱香、北村裕介、井原敏博
    • Organizer
      バイオマテリアル学会九州講演会2013
    • Place of Presentation
      熊本大学黒髪北キャンパス
    • Related Report
      2013 Research-status Report
  • [Book] ナノスケール・ミクロスケールから見えるビックな世界2013

    • Author(s)
      新藤 斎(編著)
    • Total Pages
      30
    • Publisher
      中央大学出版部
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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