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Detection of nucleic acids of Cryptosporidium oocyst by surfactant extraction treatment and its application for pathogenic evaluation

Research Project

Project/Area Number 25420559
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Civil and environmental engineering
Research InstitutionUniversity of Shizuoka

Principal Investigator

SEKIKAWA TAKAHIRO  静岡県立大学, 食品栄養科学部, 助教 (20511728)

Project Period (FY) 2013-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2013: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywordsクリプトスポリジウム / 病原性原虫 / リアルタイムPCR / 界面活性剤 / 免疫磁気分離 / 核酸抽出 / オーシスト / 河川水 / 界面活性剤抽出処理 / LAMP法 / 免疫磁気ビーズ / 水道水 / PCR / LAMP / 逆転写酵素 / PCR法 / 飲料水
Outline of Final Research Achievements

Cryptosporidium oocysts are encased in a robust wall that is extremely resistant to environmental stressors such as chlorine used to disinfect potable water. Standard procedures used to extract DNA from oocysts such as the freeze-thaw method with DNA purification kit are time-consuming and expensive. Therefore, we developed the surfactant extraction treatment (SET) that efficiently extracts DNA from the oocyst. Furthermore, we evaluated the ability of SET to detect DNA directly from immunomagnetic bead-oocyst conjugates. As a result, the rate of DNA amplification using immunomagnetic separation-SET (IMS-SET) was greater than that using the standard procedures.

Report

(5 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (17 results)

All 2017 2016 2015 2014 2013 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 1 results,  Acknowledgement Compliant: 2 results) Presentation (10 results) (of which Int'l Joint Research: 3 results) Remarks (3 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] A new immunomagnetic bead separation-surfactant extraction treatment protocol for rapid and sensitive quantitative PCR-detection of Cryptosporidium parvum DNA2017

    • Author(s)
      関川貴寛
    • Journal Title

      Wat. Sci. Tech.: Water Suppl.

      Volume: 17 Issue: 1 Pages: 161-168

    • DOI

      10.2166/ws.2016.125

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A new method for efficient detection of Cryptosporidium RNA by real-time reverse transcription-PCR with surfactants2015

    • Author(s)
      関川貴寛,戸敷浩介
    • Journal Title

      Water Science and Technology: Water Supply.

      Volume: 15(5) Issue: 5 Pages: 1061-1068

    • DOI

      10.2166/ws.2015.063

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] A new method for Cryptosporidium DNA detection by immunomagnetic bead separation and surfactant extraction treatment (IMS-SET)2016

    • Author(s)
      関川貴寛
    • Organizer
      IWA Microbial Ecology in Water Engineering & Biofilms joint specialist conference
    • Place of Presentation
      Copenhagen, Sweden
    • Year and Date
      2016-09-04
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 界面活性剤抽出処理を用いた環境水中のクリプトスポリジウム検出法2016

    • Author(s)
      関川貴寛
    • Organizer
      第50回日本水環境学会年会
    • Place of Presentation
      アスティとくしま(徳島県徳島市)
    • Year and Date
      2016-03-16
    • Related Report
      2015 Research-status Report
  • [Presentation] An improved method for extracting DNA from Cryptosporidium oocysts using immunomagnetic separation and surfactant extraction treatment2015

    • Author(s)
      関川貴寛
    • Organizer
      6th International Conference on Environmental Industrial and Applied Microbiology
    • Place of Presentation
      University of Barcelona(バルセロナ,スペイン)
    • Year and Date
      2015-10-28
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Detection of Cryptosporidium oocyst RNA by surfactant extraction treatment and RT-PCR: Inhibition of reverse transcription by SDS and its suppression using nonionic surfactants2015

    • Author(s)
      関川貴寛,戸敷浩介
    • Organizer
      6th Congress of European Microbiologists
    • Place of Presentation
      MECC Maastricht(マーストリヒト,オランダ)
    • Year and Date
      2015-06-07
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] A novel method for simple and sensitive detection of Cryptosporidium parvum by surfactant extraction treatment (SET) and quantitative reverse transcription-PCR2015

    • Author(s)
      関川貴寛
    • Organizer
      5th International Giardia & Cryptosporidium Conference
    • Place of Presentation
      Uppsala Konsert & Kongress(ウプサラ,スウェーデン)
    • Year and Date
      2015-05-27 – 2015-05-30
    • Related Report
      2014 Research-status Report
  • [Presentation] 熱応答性磁性ナノ粒子を用いたクリプトスポリジウム遺伝子検査法の開発2015

    • Author(s)
      関川貴寛,謝小毛,大西徳幸
    • Organizer
      第49回日本水環境学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Research-status Report
  • [Presentation] A new method for sensitive detection of Cryptosporidium RNA by surfactant extraction treatment and one-step RT-PCR2015

    • Author(s)
      関川貴寛,戸敷浩介
    • Organizer
      3rd International Feacal Sludge Management Conference
    • Place of Presentation
      Meliá Hanoi(ハノイ,ベトナム)
    • Year and Date
      2015-01-18 – 2015-01-21
    • Related Report
      2014 Research-status Report
  • [Presentation] 界面活性剤抽出処理とRT-qPCRを用いたクリプトスポリジウムの迅速・高感度検出法の開発2014

    • Author(s)
      関川 貴寛
    • Organizer
      第48回日本水環境学会年会
    • Place of Presentation
      東北大学川内北キャンパス(宮城県仙台市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Simple and sensitive detection of the 18S rRNA gene from Cryptosporidium parvum oocysts by surfactant extraction treatment2013

    • Author(s)
      関川 貴寛
    • Organizer
      First EMBO Conference on Aquatic Microbial Ecology
    • Place of Presentation
      The Conference Palace of Stresa (ストレーザ,イタリア)
    • Related Report
      2013 Research-status Report
  • [Presentation] RT-LAMP法を用いたクリプトスポリジウムRNAの高感度検出2013

    • Author(s)
      関川 貴寛
    • Organizer
      第34回日本食品微生物学会学術総会
    • Place of Presentation
      タワーホール船堀(東京都江戸川区)
    • Related Report
      2013 Research-status Report
  • [Remarks] 環境工学研究室

    • URL

      http://env-eng.u-shizuoka-ken.ac.jp/env-eng/

    • Related Report
      2015 Research-status Report
  • [Remarks] 静岡県立大学大学院環境工学研究室

    • URL

      http://env-eng.u-shizuoka-ken.ac.jp/env-eng/

    • Related Report
      2014 Research-status Report
  • [Remarks] 静岡県立大学大学院環境工学研究室ホームページ

    • URL

      http://env-eng.u-shizuoka-ken.ac.jp/env-eng/

    • Related Report
      2013 Research-status Report
  • [Patent(Industrial Property Rights)] 刺激応答性磁性ナノ粒子を用いた検出対象を検出する方法2015

    • Inventor(s)
      関川貴寛,謝小毛,大西徳幸
    • Industrial Property Rights Holder
      静岡県公立大学法人,JNC株式会社
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2015-051076
    • Filing Date
      2015-03-13
    • Related Report
      2014 Research-status Report
  • [Patent(Industrial Property Rights)] 刺激応答性磁性ナノ粒子を用いた遺伝子検査方法2015

    • Inventor(s)
      関川貴寛,謝小毛,大西徳幸
    • Industrial Property Rights Holder
      静岡県公立大学法人,JNC株式会社
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2015-051077
    • Filing Date
      2015-03-13
    • Related Report
      2014 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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