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Contribution of tRNA-splicing machinery in development of permuted and intronic tRNA genes.

Research Project

Project/Area Number 25440003
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Molecular biology
Research InstitutionChiba University

Principal Investigator

Akiko Soma  千葉大学, 園芸学研究科, 助教 (70350329)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2015: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2014: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2013: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
KeywordsRNAプロセシング / 翻訳 / tRNA / 遺伝子進化 / RNA / 遺伝子 / 逆転tRNA遺伝子 / C. merolae / RNA purocessing / タンデムtRNA遺伝子
Outline of Final Research Achievements

C. merolae nuclear genome contains number of intronic tRNA genes and circularly permuted tRNA genes. Precursors derived from both tRNA genes contain the BHB motif, which is the primal recognition site for the tRNA-splicing enzyme. Terefore, both tRNAs are considered to be processed by tRNA-splicing machinery and be evlutionaly correlated each other. This study showed that the permuted tRNA can be developed from tandemly repeated intronic tRNA genes in C. merolae cells. We also found that variously disrupted tRNA genes can be expressed in C. merolae cells probably because of the noncanonical tRNA maturation pathway.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (6 results)

All 2015 2014 2013

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 1 results) Presentation (3 results)

  • [Journal Article] Circularly permuted tRNA genes; their expression, processing, and development.2014

    • Author(s)
      Akiko Soma
    • Journal Title

      Frontiers in Genetics

      Volume: 5 Pages: 1-17

    • DOI

      10.3389/fgene.2014.00063

    • Related Report
      2014 Research-status Report 2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of highly-disrupted tRNAs in nuclear genome of the red alga, Cyanidioschyzon merolae 10D.2013

    • Author(s)
      Akiko Soma, Junichi Sugahara, Akinori Onodera, Nozomu Yachie, Akio Kanai, Satoru Watanabe, Hirofumi Yoshikawa, Mio Ohnuma, Haruko Kuroiwa, Tsuneyoshi Kuroiwa, and Yasuhiko Sekine
    • Journal Title

      Scientific Reports

      Volume: 3 Issue: 1 Pages: 2321-2329

    • DOI

      10.1038/srep02321

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Cyanidioschyzon merolae 10Dのpermuted tRNA遺伝子の生物学的意義の解明2013

    • Author(s)
      小原美紗子、相馬亜希子、安藤昭一
    • Journal Title

      第7回日本分子生物学会若手の会プロシーディング(要旨集)

      Volume: 1 Pages: 29-30

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] The variation and evolution of tRNA gene structure.2015

    • Author(s)
      Akiko Soma
    • Organizer
      日本分子生物学会
    • Place of Presentation
      兵庫県神戸市神戸国際会議場
    • Year and Date
      2015-12-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] 逆転および高度分断化tRNA遺伝子の機能解析2013

    • Author(s)
      相馬亜希子
    • Organizer
      極限環境微生物学会
    • Place of Presentation
      東京(明治大学)
    • Related Report
      2013 Research-status Report
  • [Presentation] Cyanidioschyzon merolae 10Dのpermuted tRNA遺伝子の生物学的意義の解明2013

    • Author(s)
      小原美紗子、相馬亜希子、安藤昭一
    • Organizer
      第7回ゲノム微生物学会若手の会
    • Place of Presentation
      静岡県(ろうきん研修センター)
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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