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Biochemical studies on the replication fork model with three DNA polymerases in human cells

Research Project

Project/Area Number 25440011
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Molecular biology
Research InstitutionKyushu University

Principal Investigator

Tsurimoto Toshiki  九州大学, 理学研究院, 教授 (30163885)

Project Period (FY) 2013-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2013: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords複製フォーク / DNAポリメラーゼ / in vitro複製 / in vitro 複製
Outline of Final Research Achievements

This research aimed to study the mechanism to proceed a replication fork with three functionally distinct DNA polymerases in eukaryotes. I especially focused on a biochemical background to distinguish DNA polymerases for syntheses of leading and lagging strands. Firstly, I reconstituted the replicative DNA helicase, human CMG complex and obtained the highly purified active CMG helicase. Secondly, I analyzed a functional significance of the interaction between the second PCNA loader Ctf18-RFC and DNA polymerase ε. I elucidated that Ctf18-RFC actively loads PCNA only when it complexes with DNA polymerase ε. This result indicated that Ctf18-RFC functions as a component of the leading-strand DNA polymerase complex and actively loads PCNA on the leading strands. Considering the role of RFC for loading of PCNA on the lagging strands, these two PCNA loaders will coordinate PCNA loading on both strands and play a role to distinguish DNA polymerases for syntheses of the two DNA strands.

Report

(5 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (42 results)

All 2017 2016 2015 2014 2013 Other

All Journal Article (15 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 15 results,  Open Access: 10 results,  Acknowledgement Compliant: 5 results) Presentation (24 results) (of which Int'l Joint Research: 4 results,  Invited: 9 results) Book (2 results) Remarks (1 results)

  • [Journal Article] The dominant role of proofreading exonuclease activity of replicative polymerase ε in cellular tolerance to cytarabine (Ara-C).2017

    • Author(s)
      Tsuda M, Terada K, Ooka M, Kobayashi K, Sasanuma H, Fujisawa R, Tsurimoto T, Yamamoto J, Iwai S, Kadoda K, Akagawa R, Huang SN, Pommier Y, Sale JE, Takeda S, Hirota K.
    • Journal Title

      Oncotarget

      Volume: in press Issue: 20 Pages: 33457-33474

    • DOI

      10.18632/oncotarget.16508

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Human CTF18-RFC clamp-loader complexed with non-synthesising DNA polymerase ε efficiently loads the PCNA sliding clamp.2017

    • Author(s)
      Fujisawa R, Ohashi E, Hirota K, Tsurimoto T
    • Journal Title

      Nucleic Acids Res.

      Volume: 印刷中 Issue: 8 Pages: 4550-4563

    • DOI

      10.1093/nar/gkx096

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] MutSα maintains the mismatch repair capability by inhibiting PCNA unloading2016

    • Author(s)
      Kawasoe, Y., Tsurimoto, T., Nakagawa, T., Masukata, H., Takahashi, TS.
    • Journal Title

      eLIFE

      Volume: 12;5

    • DOI

      10.7554/elife.15155

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Claspin recruits Cdc7 kinase for initiation of DNA replication in human cells.2016

    • Author(s)
      Yang CC, Suzuki M, Yamakawa S, Uno S, Ishii A, Yamazaki S, Fukatsu R, Fujisawa R, Sakimura K, Tsurimoto T, Masai H.
    • Journal Title

      Nat Commun.

      Volume: 7 Issue: 1 Pages: 12135-12135

    • DOI

      10.1038/ncomms12135

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] In vivo evidence for translesion synthesis by the replicative DNA polymerase δ.2016

    • Author(s)
      Hirota K, Tsuda M, Mohiuddin, Tsurimoto T, Cohen IS, Livneh Z, Kobayashi K, Narita T, Nishihara K, Murai J, Iwai S, Guilbaud G, Sale JE, Takeda S.
    • Journal Title

      Nucleic Acids Res

      Volume: 44(15) Pages: 7242-50

    • DOI

      10.1093/nar/gkw439

    • NAID

      120006338056

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Conserved interaction of Ctf18-RFC with DNA polymerase ε is critical for maintenance of genome stability in saccharomyces cerevisiae.2016

    • Author(s)
      Okimoto H, Tanaka S, Araki H, Ohashi E, Tsurimoto T.
    • Journal Title

      Genes Cells.

      Volume: in press Issue: 5 Pages: 482-491

    • DOI

      10.1111/gtc.12356

    • Related Report
      2016 Annual Research Report 2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Rapid purification and characterization of mutant origin recognition complexes in Saccharomyces cerevisiae2016

    • Author(s)
      Kawakami, H. (corresponding author), Ohashi, E., Tsurimoto, T., and Katayama, T.
    • Journal Title

      Front. Microbiol.

      Volume: 7 Pages: 521-521

    • DOI

      10.3389/fmicb.2016.00521

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Rapid purification and characterization of mutant Origin Recognition Complexes in Saccharomyces cerevisiae.2016

    • Author(s)
      Kawakami H, Ohashi E, Tsurimoto T, and Katayama T.
    • Journal Title

      Front. Microbiol.

      Volume: in press

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Specific binding of eukaryotic ORC to DNA replication origins depends on highly conserved basic residues.2015

    • Author(s)
      Kawakami H, Ohashi E, Kanamoto S, Tsurimoto T, Katayama T.
    • Journal Title

      Sci Rep.

      Volume: 5 Issue: 1 Pages: 14929-14929

    • DOI

      10.1038/srep14929

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Short CCG repeat in huntingtin gene is an obstacle for replicative DNA polymerases, potentially hampering progression of replication fork.2015

    • Author(s)
      Le HP, Masuda Y, Tsurimoto T, Maki S, Katayama T, Furukohri A, Maki H.
    • Journal Title

      Genes Cells.

      Volume: 10 Issue: 10 Pages: 817-833

    • DOI

      10.1111/gtc.12275

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Intramolecular Binding of the Rad9 C Terminus in the Checkpoint Clamp Rad9-Hus1-Rad1 Is Closely Linked with Its DNA Binding.2015

    • Author(s)
      Takeishi Y, Iwaya-Omi R, Ohashi E, Tsurimoto T.
    • Journal Title

      J Biol Chem.

      Volume: 290 Issue: 32 Pages: 19923-19932

    • DOI

      10.1074/jbc.m115.669002

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The POLD3 subunit of DNA polymerase δ can promote translesion synthesis independently of DNA polymerase ζ.2015

    • Author(s)
      Hirota K, Yoshikiyo K, Guilbaud G, Tsurimoto T, Murai J, Tsuda M, Phillips L, Narita T, Nishihara K, Kobayashi K, Yamada K, Nakamura J, Pommier Y, Lehmann, A, Sale J, Takeda S
    • Journal Title

      Nucleic Acids Res.

      Volume: 43 Issue: 3 Pages: 1671-1683

    • DOI

      10.1093/nar/gkv023

    • NAID

      120005825923

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Interaction between Rad9-Hus1-Rad1 and TopBP1 activates ATR-ATRIP and promotes TopBP1 recruitment to sites of UV-damage.2014

    • Author(s)
      Ohashi E, Takeishi Y, Ueda S, Tsurimoto T.
    • Journal Title

      DNA Repair (Amst)

      Volume: 21 Pages: 1-11

    • DOI

      10.1016/j.dnarep.2014.05.001

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] 3.Kaposi's sarcoma-associated herpesvirus LANA recruits the DNA polymerase clamp loader to mediate efficient replication and virus persistence.2014

    • Author(s)
      Sun Q, Tsurimoto T, Juillard F, Li L, Li S, De León Vázquez E, Chen S, Kaye K.
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: 111 Pages: 11816-11821

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] RAD5a ubiquitin ligase is involved in ubiquitination of Arabidopsis thaliana proliferating cell nuclear antigen2013

    • Author(s)
      Strzalka W, Bartnicki F, Pels K, Jakubowska A, Tsurmoto T, Tanaka K.
    • Journal Title

      J. Exp. Bot.

      Volume: 64 Issue: 4 Pages: 859-869

    • DOI

      10.1093/jxb/ers368

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Rad9 C末端による9-1-1クランプへの蛋白質結合の制御2017

    • Author(s)
      大橋 英治、岩田 直也、釣本 敏樹
    • Organizer
      第34回染色体ワークショップ・第15回核ダイナミクス研究会合同
    • Place of Presentation
      木更津市
    • Year and Date
      2017-01-11
    • Related Report
      2016 Annual Research Report
  • [Presentation] PCNA結合蛋白質のRad9-Hus1-Rad1リングとの結合メカニズム2016

    • Author(s)
      大橋英治、岩田直也、釣本敏樹
    • Organizer
      第39回日本分子生物学会年会シンポジウム
    • Place of Presentation
      横浜市
    • Year and Date
      2016-12-02
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Polεを足場にしたCtf18-RFCによる動的PCNAローディング2016

    • Author(s)
      釣本 敏樹 藤澤 遼 大橋英治
    • Organizer
      第39回日本分子生物学会年会シンポジウム
    • Place of Presentation
      横浜市
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Ctf18-RFC bound to Polε loads PCNA efficiently.2016

    • Author(s)
      Fujisawa R, Ohashi E, Hirota K, Tsurimoto T
    • Organizer
      The 10th 3R Symposium
    • Place of Presentation
      Matsue, Japan
    • Year and Date
      2016-11-13
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Intramolecular folding of Rad9 C-terminal tail in the Rad9-Hus1-Rad1 checkpoint clamp regulates its interaction with DNA damage response proteins.2016

    • Author(s)
      Ohashi E, Iwata N, Tsurimoto T
    • Organizer
      The 10th 3R Symposium
    • Place of Presentation
      Matsue, Japan
    • Year and Date
      2016-11-13
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] クランプ・ローダー系による進行障害時の複製フォークの機能制御2015

    • Author(s)
      Tsurimoto T, Ohashi E, Fujisawa R, Takeishi Y
    • Organizer
      第38回日本分子生物学会年会ワークショップ
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Rad9 C末端によるチェックポイントクランプRad9-Hus1-Rad1の機能制御機構2015

    • Author(s)
      Ohashi E, Takeishi Y, Tsurimoto T.
    • Organizer
      第38回日本分子生物学会年会ワークショップ
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Rad9 C末端によるRad9-Hua1-Rad1(9-1-1)のDNA損傷応答制御機構2015

    • Author(s)
      Ohashi E, Takeishi Y, and Tsurimoto T.
    • Organizer
      第23回DNA複製・組換え・修復ワークショップ
    • Place of Presentation
      焼津
    • Year and Date
      2015-10-19
    • Related Report
      2015 Research-status Report
  • [Presentation] Polεに結合したCtf18-RFCのPCNAローディング過程の解析2015

    • Author(s)
      Ryo Fujisawa, Ohashi E, Tsurimoto T.
    • Organizer
      第23回DNA複製・組換え・修復ワークショップ
    • Place of Presentation
      焼津
    • Year and Date
      2015-10-19
    • Related Report
      2015 Research-status Report
  • [Presentation] Functional Significance of the interaction between the second PCNA loaderCtf18-RFC and Pol e2015

    • Author(s)
      Ryo Fujisawa, Ohashi E, Tsurimoto T.
    • Organizer
      Eukaryotic DNA replication & genome maintenance Cold Spring Harbor Laboratory Meeting
    • Place of Presentation
      New York USA
    • Year and Date
      2015-09-01
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Multiple roles of Rad9 C-tail in the checkpoint clamp Rad9-Hus1-Rad12015

    • Author(s)
      Ohashi E, Takeishi Y, Tsurimoto T.
    • Organizer
      Eukaryotic DNA replication & genome maintenance Cold Spring Harbor Laboratory Meeting
    • Place of Presentation
      New York USA
    • Year and Date
      2015-09-01
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] DNA損傷応答因子ATR-ATRIP, Rad9-Hus1-Rad1, TopBP1の3者間結合によるATR活性化機構2014

    • Author(s)
      Ohashi E, Takeishi Y, Ueda S, Tsurimoto T
    • Organizer
      第37回日本分子生物学会年会ワークショップ
    • Place of Presentation
      横浜
    • Year and Date
      2014-11-27
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] ヒトCtf18-RFCはPolεと複合体となって機能的にPCNAをロードする2014

    • Author(s)
      Fujisawa R, Tsrurimoto T
    • Organizer
      第37回日本分子生物学会年会ワークショップ
    • Place of Presentation
      横浜
    • Year and Date
      2014-11-27
    • Related Report
      2014 Research-status Report
  • [Presentation] 出芽酵母ORC複合体の分子内外クロストークの同定2014

    • Author(s)
      Kawakami H, Kawanishi T, Ohashi E, Tsrurimoto T, Katayama T
    • Organizer
      第37回日本分子生物学会年会ワークショップ
    • Place of Presentation
      横浜
    • Year and Date
      2014-11-27
    • Related Report
      2014 Research-status Report
  • [Presentation] The C-terminal of Rad9 associates to the core ring structure of the checkpoint clamp, Rad9-Hus1-Rad1, and regulates its DNA binding activity2014

    • Author(s)
      Takeishi Y, Ohashi E, Tsrurimoto T
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2014-11-25
    • Related Report
      2014 Research-status Report
  • [Presentation] Novel mechanisms of PCNA loader complexes to specify their functions.2014

    • Author(s)
      Tsurimoto T, Fujisawa R, Ohashi E, Tanaka S, Araki H, Sun Q, Kaye K
    • Organizer
      The 9th 3R Symposium
    • Place of Presentation
      Gotemba, Shizuoka Japan
    • Year and Date
      2014-11-20
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] The ATR activation through the accumulation of the checkpoint factors and their interactions at the site of DNA damage2014

    • Author(s)
      Ohashi E, Takeishi Y, Tsrurimoto T
    • Organizer
      The 9th 3R Symposium
    • Place of Presentation
      Gotemba, Shizuoka Japan
    • Year and Date
      2014-11-20
    • Related Report
      2014 Research-status Report
  • [Presentation] Interaction of Ctf18-RFC with DNA polymerase ε specifies their functional sites for the active PCNA loading2014

    • Author(s)
      Fujisawa R, Tsrurimoto T
    • Organizer
      The 9th 3R Symposium
    • Place of Presentation
      Gotemba, Shizuoka Japan
    • Year and Date
      2014-11-19
    • Related Report
      2014 Research-status Report
  • [Presentation] Polε/Ctf18-RFC複合体による複製フォーク進行障害への応答2014

    • Author(s)
      沖本寛子、藤澤遼、田栗蘭、大橋英治、田中誠司、荒木弘之、釣本敏樹
    • Organizer
      「ゲノムを支る非コードDNA領域の機能」 公開シンポジウム インターメアによる染色体制御機構
    • Place of Presentation
      東京
    • Related Report
      2013 Research-status Report
  • [Presentation] ヒトから酵母まで保存されたPolε/Ctf18-RFC間相互作用2013

    • Author(s)
      沖本寛子、藤澤遼、田栗蘭、大橋英治、田中誠司、荒木弘之、釣本敏樹
    • Organizer
      DNA複製・組換え・修復ワークショップ
    • Place of Presentation
      仙台
    • Related Report
      2013 Research-status Report
  • [Presentation] DNAポリメラーゼεとPCNAローダーCtf18-RFCのホロ複合体形成とその機能

    • Author(s)
      Tsurimoto T, Okimoto H, Ryo Fujisawa, Ran Taguri, Ohashi E, Tanaka S, Araki H
    • Organizer
      第36回日本分子生物学会年会ワークショップ
    • Place of Presentation
      神戸
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 出芽酵母Ctf18のC末端はヒトと同様にDNA ポリメラーセεとの結合に関与し、ケノム安定性に重要である

    • Author(s)
      沖本 寛子、田栗 蘭、田中 誠司、荒木 弘之、釣本 敏樹
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2013 Research-status Report
  • [Presentation] Roles of loader proteins for coupling between replication and chromosome maintenance.

    • Author(s)
      Okimoto H, Tanaka S, Araki H, Ohashi E, Tsurimoto T.
    • Organizer
      International Conference "Coupling of replication, repair and transcription, and their common mechanism of chromatin remodeling"
    • Place of Presentation
      京都
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Functions of the C-terminal of the chromosome cohesion PCNA loader, Ctf18-RFC

    • Author(s)
      Okimoto H, Tanaka S, Araki H, Ohashi E, Tsurimoto T.
    • Organizer
      Cold Spring Harbor Lab. Eukaryotic DNA Replication & Genome Maintenanceワークショップ
    • Place of Presentation
      米国、NewYork
    • Related Report
      2013 Research-status Report
  • [Book] Functions of multiple clamp and clamp-loader complexes in eukaryotic DNA replication in "DNA Replication: From Old Principles to New Discovery” Advances in Experimental Medicine and Biology,2017

    • Author(s)
      Ohashi E, Tsurimoto T
    • Publisher
      Springer
    • Related Report
      2016 Annual Research Report
  • [Book] 分子遺伝学 in 遺伝学(遺伝子から見た生物)鷲谷いずみ、桂勳編2017

    • Author(s)
      釣本敏樹
    • Total Pages
      32
    • Publisher
      培風館
    • Related Report
      2016 Annual Research Report
  • [Remarks] 染色体機能学研究室複製グループ

    • URL

      http://seibutsu.biology.kyushu-u.ac.jp/~chromosome/

    • Related Report
      2016 Annual Research Report

URL: 

Published: 2014-07-25   Modified: 2019-07-29  

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