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Study of aromatic ring-flipping in protein interiors at high pressures

Research Project

Project/Area Number 25440018
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionKumamoto University (2015)
Nagoya University (2013-2014)

Principal Investigator

TAKEDA MITSUHIRO  熊本大学, 生命科学研究部, 助教 (90508558)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2013: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
KeywordsNMR / SAIL / NMR / SAIL / タンパク質 / 構造ゆらぎ / 高圧実験 / 芳香環反転
Outline of Final Research Achievements

The side-chain aromatic rings of phenylalanine and tyrosine residues in the interior of protein frquenty rotate about their Cb-Cg axis, which is assumed to occur when the protein undergoes a large amplitude slow breathing motion. In this project, uder varied hydrotatic pressures, the ring flipping rates were evaluated by using the SAIL-NMR methds. This study expectedly provides new insight into the large amplitude motion of proteins.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (16 results)

All 2015 2014 2013 Other

All Journal Article (8 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 8 results,  Open Access: 4 results,  Acknowledgement Compliant: 3 results) Presentation (7 results) (of which Int'l Joint Research: 2 results,  Invited: 4 results) Remarks (1 results)

  • [Journal Article] Nano-mole scale side-chain assignment by 1H-detected protein solid-state NMR by ultra-fast magic-angle spinning and stereo-array isotope labeling2015

    • Author(s)
      Songlin Wang, Sudhakar Parthasarathy, Yusuke Nishiyama, Yuki Endo, Takahiro Nemoto, Kazuo Yamauchi, Tetsuo Asakura, Mitsuhiro Takeda, Tsutomu Terauchi, Masatsune Kainosho, and Yoshitaka Ishii
    • Journal Title

      PLoS One

      Volume: 10 Issue: 4 Pages: 1-12

    • DOI

      10.1371/journal.pone.0122714

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Nano-mole scale sequential signal assignment by 1H-detected protein solid-state NMR2015

    • Author(s)
      Songlin Wang, Sudhakar Parthasarathy, Yiling Xiao, Yusuke Nishiyama, Fei Long, Isamu Matsuda, Yuki Endo, Takahiro Nemoto, Kazuo Yamauchi, Tetsuo Asakura, Mitsuhiro Takeda, Tsutomu Terauchi, Masatsune Kainosho, Yoshitaka Ishii
    • Journal Title

      Chem. Commun. (Camb)

      Volume: 51 Issue: 81 Pages: 15055-8

    • DOI

      10.1039/c5cc04618a

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Differential large-amplitude breathing motions in the interface of FKBP12-drug complexes2015

    • Author(s)
      Chun-Jiun Yang, Mitsuhiro Takeda, Tsutomu Terauchi, JunGoo Jee, Masatsune Kainosho
    • Journal Title

      Biochemistry

      Volume: 54 Issue: 47 Pages: 6983-95

    • DOI

      10.1021/acs.biochem.5b00820

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Automated resonance assignment of the 21 kDa stereo-array isotope labeled thioldisulfide oxidoreductase DsbA.2014

    • Author(s)
      Schmidt, E., Ikeya, T., Takeda, M., Loehr, F., Buchner, L., Ito, Y., Kainosho, M., Guentert, P.
    • Journal Title

      J. Magn. Reson.

      Volume: 249 Pages: 88-93

    • DOI

      10.1016/j.jmr.2014.10.005

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Expression and purification of a GRAS domain of SLR1, the rice DELLAprotein2014

    • Author(s)
      Sato, T., Miyanoiri, Y., Takeda, M., Naoe, Y., Mitani, R., Hirano, K., Takehara, S., Kainosho, M., Matsuoka, M., Ueguchi-Tanaka, M., Kato, H.
    • Journal Title

      Protein Expr. Purif.

      Volume: N/A Pages: 248-254

    • DOI

      10.1016/j.pep.2014.01.006

    • Related Report
      2014 Research-status Report 2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Use of H/D isotope effects to gather information about hydrogen bonding and hydrogen exchange rates2014

    • Author(s)
      Mitsuhiro Takeda, Yohei Miyanoiri, Tsutomu Terauchi, Chun-Jiun Yang, Masatsune Kainosho
    • Journal Title

      J. Magn. Reson.

      Volume: 241 Pages: 148-154

    • DOI

      10.1016/j.jmr.2013.10.001

    • Related Report
      2014 Research-status Report 2013 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Differential isotope-labeling for Leu and Val residues in a protein by E. coli cellular expression using stereo-specifically methyl labeled amino acids2013

    • Author(s)
      Yohei Miyanoiri, Mitsuhiro Takeda, Kosuke Okuma, Akira M. Ono, Tsutomu Terauchi, Masatsune Kainosho
    • Journal Title

      J. Biomol. NMR

      Volume: 57 Issue: 3 Pages: 237-249

    • DOI

      10.1007/s10858-013-9784-0

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Molecular bases of multimodal regulation of a fungal transient receptor potential (TRP) channel2013

    • Author(s)
      Ihara M,Hamamoto S, Miyanoiri Y, Takeda M, Kainosho M, Yabe I, Uozumi N, Yamashita A
    • Journal Title

      Journal of Biological Chemistry

      Volume: (in press) Issue: 21 Pages: 15303-17

    • DOI

      10.1074/jbc.m112.434795

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] NMR Hydrogen exchange study of polar side-chain groups in proteins2015

    • Author(s)
      Mitsuhiro Takeda, Yohei Miyanoiri, Chun-Jiun Yang, Sanae Kondo, Tsutomu Terauchi, Masatsune Kainosho
    • Organizer
      ISMAR
    • Place of Presentation
      Shanghai, China
    • Year and Date
      2015-08-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 13C NMR analyses using site-specific isotope labeling for studying hydrogen exchange and protonation states of polar side-chain groups in proteins2015

    • Author(s)
      Mitsuhiro Takeda, Yohei Miyanoiri, Chun-Jiun Yang, Sanae Kondo, Tsutomu Terauchi, Masatsune Kainosho
    • Organizer
      Asia-Pacific NMR
    • Place of Presentation
      Hong Kong, China
    • Year and Date
      2015-08-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] SAIL法を利用したタンパク質構造揺らぎのNMR研究2014

    • Author(s)
      武田光広、甲斐荘正恒
    • Organizer
      第53回NMR討論会
    • Place of Presentation
      大阪大学吹田キャンパス
    • Year and Date
      2014-11-04 – 2014-11-06
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] NMR method for investigating hydrogen exchange rate of lysine side-chain amino group2014

    • Author(s)
      Mitsuhiro Takeda, Tsutomu Terauchi and Masatsune Kainosho
    • Organizer
      International Conference of Magnetic Resonance in Biological System
    • Place of Presentation
      USA, Dallas
    • Year and Date
      2014-08-24 – 2014-08-29
    • Related Report
      2014 Research-status Report
  • [Presentation] 蛋白質リジン残基側鎖アミノ基の水素交換速度の解析2013

    • Author(s)
      武田光広、寺内勉、甲斐荘正恒
    • Organizer
      第52回NMR討論会
    • Place of Presentation
      石川県金沢市石川県立音楽堂
    • Related Report
      2013 Research-status Report
  • [Presentation] SAIL―NMR法による蛋白質過渡的揺らぎの研究2013

    • Author(s)
      武田光広
    • Organizer
      平成25年度 日本分光学会NMR分光部会 講習会
    • Place of Presentation
      愛知県名古屋市名古屋大学ES館会議室
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] SAIL-NMR法による蛋白質の Large amplitude breathing motion の解析2013

    • Author(s)
      武田光広
    • Organizer
      大学院セミナー
    • Place of Presentation
      滋賀県草津市立命館大学びわこ・くさつキャンパス
    • Related Report
      2013 Research-status Report
    • Invited
  • [Remarks] 名古屋大学理学研究科付属構造生物学研究センター

    • URL

      http://str.bio.nagoya-u.ac.jp:8080/Plone

    • Related Report
      2013 Research-status Report

URL: 

Published: 2014-07-25   Modified: 2019-07-29  

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