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Structural study of the novel transcription mechanism essential for root development of higher plants

Research Project

Project/Area Number 25440025
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionNara Institute of Science and Technology

Principal Investigator

Hirano Yoshinori  奈良先端科学技術大学院大学, バイオサイエンス研究科, 助教 (50452529)

Project Period (FY) 2013-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2013: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
KeywordsX線結晶構造解析 / 分子認識 / 転写因子 / GRASファミリー / IDDファミリー / 転写制御 / 根のパターン形成 / タンパク質複合体 / タンパク質相互作用 / パターン形成 / BIRD/IDDファミリー / 植物形態形成 / 分子複合体 / 結晶構造解析
Outline of Final Research Achievements

Two GRAS proteins, SHR and SCR, cooperatively direct asymmetric cell division and the patterning of root cell types by transcriptional control in conjunction with BIRD/IDD transcription factors. The crystal structures of the SHR-SCR binary and JKD-SHR-SCR ternary complexes has been determined. Each GRAS domain comprises one α/β core subdomain with an α-helical cap that mediates heterodimerization by forming an intermolecular helix bundle. The α/β core subdomain of SHR forms the BIRD binding groove, which specifically recognizes the zinc fingers of JKD. We identified a conserved SHR-binding motif in 13 BIRD/IDD transcription factors. Our results establish a structural basis for GRAS-GRAS and GRAS-BIRD interactions and provide valuable clues towards our understanding of these regulators, which are involved in plant-specific signalling networks.

Report

(5 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (11 results)

All 2017 2016 2015 2014 2013 Other

All Int'l Joint Research (1 results) Journal Article (7 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 7 results,  Open Access: 2 results) Remarks (3 results)

  • [Int'l Joint Research] Department of Biology, Duke University(米国)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD2017

    • Author(s)
      Hirano Y, Nakagawa M, Suyama T, Murase K, Shirakawa M, Takayama S, Sun T-p, Hakoshima T
    • Journal Title

      Nature Plants

      Volume: 3 Issue: 3 Pages: 17010-17010

    • DOI

      10.1038/nplants.2017.10

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Mechano-adaptive sensory mechanism of α-catenin under tension2016

    • Author(s)
      Koichiro Maki, Sung-Woong Han, Yoshinori Hirano, Shigenobu Yonemura, Toshio Hakoshima & Taiji Adachi
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 24878-24878

    • DOI

      10.1038/srep24878

    • NAID

      120006337976

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Efficient expression of SRK intracellular domain by a modeling-based protein engineering.2016

    • Author(s)
      Murase K, Hirano Y, Takayama S, Hakoshima T.
    • Journal Title

      Protein Expression and Purification

      Volume: 印刷中 Pages: 70-75

    • DOI

      10.1016/j.pep.2015.09.020

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structure of the free form of the N-terminal VH1 domain of monomeric α-catenin.2015

    • Author(s)
      Shibahara T, Hirano Y, Hakoshima T.
    • Journal Title

      FEBS Letter

      Volume: 589 Issue: 15 Pages: 1754-1760

    • DOI

      10.1016/j.febslet.2015.05.053

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structure of the human cereblon-DDB1- lenalidomide complex reveals basis for responsiveness to thalidomide analogs2014

    • Author(s)
      P. Chamberlain, A. Lopez-Girona, K. Miller, G. Carmel, B. Pagarigan, B. Chie-Leon, E. Rychak, L. Corral, Y. Ren, M. Wang, M. Riley, S. Delker, T. Ito, H. Ando, T. Mori, Y. Hirano, H. Handa, T. Hakoshima, T. Daniel, B. Cathers
    • Journal Title

      Nat. Struct. Mol. Biol.

      Volume: 21 Issue: 9 Pages: 803-809

    • DOI

      10.1038/nsmb.2874

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Mechanism of high-affinity abscisic acid binding to PYL9/RCAR12014

    • Author(s)
      Nakagawa M, Kagiyama M, Shibata N, Hirano Y, Hakoshima T.
    • Journal Title

      Genes to Cells

      Volume: 19 Issue: 5 Pages: 386-404

    • DOI

      10.1111/gtc.12140

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structural and functional analysis of the yeast N-acetyltransferase Mpr1 involved in oxidative stress tolerance via proline metabolism.2013

    • Author(s)
      Nasuno R, Hirano Y, Itoh T, Hakoshima T, Hibi T, Takagi H.
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: 110 Issue: 29 Pages: 11821-11826

    • DOI

      10.1073/pnas.1300558110

    • NAID

      120005716836

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Remarks] 世界初 植物の根の内部構造を決める起動スイッチの働きを三次元で解明

    • URL

      http://bsw3.naist.jp/research/index.php?id=1463

    • Related Report
      2016 Annual Research Report
  • [Remarks] 〔プレスリリース〕世界初 植物の根の内部構造を決める起動スイッチの働きを三次元で解明

    • URL

      http://www.naist.jp/news/2017/02/003661.html

    • Related Report
      2016 Annual Research Report
  • [Remarks] 構造生物学研究室ホームページ

    • URL

      http://bsw3.naist.jp/hako/

    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-07-25   Modified: 2022-02-16  

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