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Biochemical characterization of functional enzymes involved in L-hydroxyproline metabolism from bacteria

Research Project

Project/Area Number 25440049
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Functional biochemistry
Research InstitutionEhime University

Principal Investigator

WATANABE SEIYA  愛媛大学, 農学部, 准教授 (90379032)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2014: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2013: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
KeywordsL-ヒドロキシプロリン / 遺伝子クラスター / 物質代謝 / ヒドロキシプロリン / 微生物の物質代謝 / フラビン依存性脱水素酵素 / プロリン / コラーゲン / 微生物代謝 / 脱水素酵素 / 代謝経路
Outline of Final Research Achievements

Biochemical characterization of functional enzymes involved in L-hydroxyproline metabolism from bacteria were carried out. D-Hydroxyproline dehydrogenase consisted of α-,β- and γ-subunits, in which the β-subunit played a role as a catalytic subunit, and the remaining them functioned to maintain the structural folding and/or to improve the catalysis. A lysine residue at the position of 164 formed a Schiff base intermediate under NaBH4. Several bacteria could metabolize not only 4-hydroxyproline but also 3-hydroxyproline, and trans-3-hydroxy-L-proline dehydratase and Δ1-pyrroline 2-carboxylate reductase involved in the 3-hydroxyptoline metabolism were identified enzymatically and genetically.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (31 results)

All 2015 2014 2013

All Journal Article (10 results) (of which Peer Reviewed: 9 results,  Open Access: 4 results,  Acknowledgement Compliant: 7 results) Presentation (18 results) (of which Invited: 8 results) Patent(Industrial Property Rights) (3 results) (of which Overseas: 1 results)

  • [Journal Article] Characterization of flavin-containing opine dehydrogenase from bacteria.2015

    • Author(s)
      Watanabe, S., Sueda, R., Fukumori, F. and Watanabe, Y.
    • Journal Title

      PLoS One

      Volume: 10 Issue: 9 Pages: e0138434-e0138434

    • DOI

      10.1371/journal.pone.0138434

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Monitoring technology for gamma-aminobutyric acid production in polished mochi barley grains using a carbon dioxide sensor.2015

    • Author(s)
      Watanabe, Y., Kawata, K. and Watanabe, S.
    • Journal Title

      J. Food Sci.

      Volume: 80 Issue: 6

    • DOI

      10.1111/1750-3841.12867

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification and characterization of bifunctional proline racemase/hydroxyproline epimerase from archaea. Discrimination of substrates and molecular evolution2015

    • Author(s)
      Watanabe, S., Tanimoto, Y., Nishiwaki, H. and Watanabe, Y.
    • Journal Title

      PLoS One

      Volume: 10 Issue: 3 Pages: e0120349-e0120349

    • DOI

      10.1371/journal.pone.0120349

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] An enzymatic method to estimate the content of L-hydroxyproline2015

    • Author(s)
      Watanabe, S., Hiraoka, Y., Endo, S., Tanimoto, Y., Tozawa, Y. and Watanabe, Y.
    • Journal Title

      Journal of Biotechnology

      Volume: 199 Pages: 9-16

    • DOI

      10.1016/j.jbiotec.2015.01.026

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] A bienzyme electrochemical biosensor for the detection of collagen L-hydroxyproline2015

    • Author(s)
      Sakamoto, H., Watanabe, K., Koto, A., Koizumi, G., Satomura, T., Watanabe, S. and Suye, SI.
    • Journal Title

      Sensing and Bio-sensing Research

      Volume: 4 Pages: 37-39

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Ornithine cyclodeaminase/μ-crystallin homolog from hyperthermophilic archaeon Thermococcus litoralis functions as a novel Δ1-pyrroline-2-carboxylate reductase involved in putative trans-3-hydroxy-L-proline metabolism2014

    • Author(s)
      Watanabe, S., Tozawa, Y. and Watanabe, Y.
    • Journal Title

      FEBS Open Bio

      Volume: 4 Issue: 1 Pages: 617-626

    • DOI

      10.1016/j.fob.2014.07.005

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Diversity in Guanosine 3′,5′-Bisdiphosphate (ppGpp) Sensitivity Among Guanylate Kinases of Bacteria and Plants.2014

    • Author(s)
      Nomura, Y., Izumi, A., Fukunaga, Y. Kusumi, K., Iba, K., Watanabe, S., Nakahira, Y., Weber, A. P., Nozawa, A., and Tozawa, Y.
    • Journal Title

      J. Biol. Chem.

      Volume: 289 Issue: 22 Pages: 15631-15641

    • DOI

      10.1074/jbc.m113.534768

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Breeding of a xylose-fermenting hybrid strain by mating genetically engineered haploid strains derived from industrial Saccharomyces cerevisiae2014

    • Author(s)
      Inoue, H., Hashimoto, S., Matsushika, A., Watanabe, S. and Sawayama, S.
    • Journal Title

      Journal of Industrial Microbiology and Biotechnology

      Volume: 41 Issue: 12 Pages: 1773-1781

    • DOI

      10.1007/s10295-014-1531-3

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Identification and characterization of trans-3-hydroxy-L-proline dehydratase and Δ1-pyrroline-2-carboxylate reductase involved in trans-3-hydroxy-L-proline metabolism of bacteria.2014

    • Author(s)
      Watanabe, S., Tanimoto, Y., Yamauchi, S., Tozawa, Y., Sawayama, S., and Watanabe, Y.
    • Journal Title

      FEBS Open Bio

      Volume: 4 Issue: 1 Pages: 240-250

    • DOI

      10.1016/j.fob.2014.02.010

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] 生体サンプル中のコラーゲンを酵素で定量2014

    • Author(s)
      渡辺誠也
    • Journal Title

      月刊ケミカルエンジニヤリング

      Volume: 59 Pages: 36-41

    • Related Report
      2013 Research-status Report
  • [Presentation] バクテリアのオピンコンセプトに関わるフラビン依存性オピン脱水素酵素2015

    • Author(s)
      渡辺誠也
    • Organizer
      農芸化学会2015年度中四国・西日本支部合同大会
    • Place of Presentation
      愛媛大学
    • Year and Date
      2015-09-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] アーキアのプロリン・ヒドロキシプロリン関連酵素の最近の知見2015

    • Author(s)
      渡辺誠也
    • Organizer
      第28回日本Archaea研究会講演会
    • Place of Presentation
      愛媛大学
    • Year and Date
      2015-07-23
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] プロリンとヒドロキシプロリンの両者に作用し立体異性変換を触媒する古細菌由来の酵素2015

    • Author(s)
      渡辺誠也
    • Organizer
      第56回日本生化学会中国・四国支部会例会
    • Place of Presentation
      島根大学
    • Year and Date
      2015-05-30
    • Related Report
      2015 Annual Research Report
  • [Presentation] 微生物代謝酵素を利用したヒドロキシプロリンの定量法2015

    • Author(s)
      渡辺誠也、平岡芳信、遠藤志織、谷本佳彰、渡部保夫
    • Organizer
      日本農芸化学会2015年度大会
    • Place of Presentation
      岡山大学
    • Year and Date
      2015-03-28
    • Related Report
      2014 Research-status Report
  • [Presentation] 微生物酵素の発見および機能変換と産業利用2015

    • Author(s)
      渡辺誠也
    • Organizer
      第3回置賜マイクロ・ナノバイオフォーラム「微生物機能の制御と産業利用」
    • Place of Presentation
      米沢市
    • Year and Date
      2015-02-04
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 酵母によるバイオエタノール生産の現状と課題2014

    • Author(s)
      渡辺誠也
    • Organizer
      日本生体エネルギー研究会第40回討論会
    • Place of Presentation
      愛媛大学
    • Year and Date
      2014-10-29
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 細菌によるトランス-3-ヒドロキシ-L-プロリン代謝経路の解明2014

    • Author(s)
      渡辺誠也、谷本佳彰、戸澤譲、渡部保夫
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      京都市
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Research-status Report
  • [Presentation] 微生物のヒドロキシプロリン代謝2014

    • Author(s)
      渡辺誠也
    • Organizer
      日本農芸化学会中四国支部第18回若手シンポジウム「微生物由来のアミノ酸関連酵素」
    • Place of Presentation
      愛媛大学
    • Year and Date
      2014-09-20
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] バイオ燃料の現状と課題2014

    • Author(s)
      渡辺誠也
    • Organizer
      第26回中四国伝熱セミナー
    • Place of Presentation
      松山市
    • Year and Date
      2014-09-12
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 細菌のトランス-3-ヒドロキシプロリン代謝経路の解明2014

    • Author(s)
      渡辺誠也、谷本佳彰、山内清司、戸澤譲、渡部保夫
    • Organizer
      第55回日本生化学会中国・四国支部例会
    • Place of Presentation
      愛媛大学
    • Year and Date
      2014-06-06
    • Related Report
      2014 Research-status Report
  • [Presentation] L-ヒドロキシプロリンのバイオセンシングシステムの構築2014

    • Author(s)
      小泉岳、渡邊和也、坂元博昭、渡辺誠也、里村武範、末信一朗
    • Organizer
      日本農芸化学会2014年度大会
    • Place of Presentation
      京王プラザホテル、明治大学生田キャンパス
    • Related Report
      2013 Research-status Report
  • [Presentation] ヒドロキシプロリンを酵素で定量する2014

    • Author(s)
      渡辺誠也
    • Organizer
      日本農芸化学会中四国支部第38回講演会(例会)
    • Place of Presentation
      香川大学農学部
    • Related Report
      2013 Research-status Report
  • [Presentation] 細菌のヒドロキシプロリン代謝2013

    • Author(s)
      渡辺誠也
    • Organizer
      国立遺伝学研究所研究会「細菌細胞の増殖と代謝研究会(スイッチング制御)」
    • Place of Presentation
      国立遺伝学研究所(静岡県三島市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 新しい酵素の発見と産業への応用2013

    • Author(s)
      渡辺誠也
    • Organizer
      農芸化学会中四国支部第16回若手シンポジウム
    • Place of Presentation
      高知大学農学部
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 細菌によるコラーゲン由来ヒドロキシプロリン代謝に関する新知見2013

    • Author(s)
      渡辺誠也、谷本佳彰、西脇寿、戸澤譲、渡部保夫
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2013 Research-status Report
  • [Presentation] D型異性体を介した細菌の新規L-ヒドロキシプロリン代謝経路の解明と産業応用2013

    • Author(s)
      渡辺誠也
    • Organizer
      第9回D-アミノ酸研究会学術講演会
    • Place of Presentation
      関西大学千里山キャンパス100周年記念会館
    • Related Report
      2013 Research-status Report
  • [Presentation] 生体サンプル中のコラーゲンを酵素で定量2013

    • Author(s)
      渡辺誠也
    • Organizer
      JST四国地区五大学新技術説明会
    • Place of Presentation
      JST東京本部別館ホール
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] L-ヒドロキシプロリンの簡便・迅速な定量方法2013

    • Author(s)
      渡辺誠也
    • Organizer
      第12回国際バイオテクノロジー展/技術会議(Bio tech 2013)
    • Place of Presentation
      東京ビッグサイト
    • Related Report
      2013 Research-status Report
    • Invited
  • [Patent(Industrial Property Rights)] 3-ヒドロキシプロリンの分析方法、コラーゲンの測定方法、およびそれに用いる新規Δ1-ピロリン-2-カルボン酸還元酵素2014

    • Inventor(s)
      渡辺誠也、谷本佳彰
    • Industrial Property Rights Holder
      国立大学法人愛媛大学
    • Industrial Property Rights Type
      特許
    • Filing Date
      2014-06-05
    • Related Report
      2014 Research-status Report
    • Overseas
  • [Patent(Industrial Property Rights)] 3-ヒドロキシプロリンの分析方法、コラーゲンの測定方法、およびそれに用いる新規Δ1-ピロリン-2-カルボン酸還元酵素2013

    • Inventor(s)
      渡辺誠也、谷本佳彰
    • Industrial Property Rights Holder
      愛媛大学
    • Industrial Property Rights Type
      特許
    • Filing Date
      2013-09-09
    • Related Report
      2013 Research-status Report
  • [Patent(Industrial Property Rights)] L-ヒドロキシプロリンの分析方法、コラーゲンの測定方法、およびそれに用いるD-ヒドロキシプロリン脱水素酵素2013

    • Inventor(s)
      渡辺誠也、森本大地、笹井雄貴
    • Industrial Property Rights Holder
      愛媛大学
    • Industrial Property Rights Type
      特許
    • Filing Date
      2013-04-30
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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