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Structural biology of phage long tail fiber protein and host recognition

Research Project

Project/Area Number 25440066
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biophysics
Research InstitutionTokyo Institute of Technology

Principal Investigator

Kanamaru Shuji  東京工業大学, 生命理工学院, 助教 (50376951)

Project Period (FY) 2013-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2013: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsバクテリオファージ / ウイルス / 構造蛋白質 / 繊維状蛋白質 / X線結晶構造解析 / 宿主認識 / ウイルス蛋白質 / 構造解析 / 結晶構造解析 / ファージ / 蛋白質複合体 / 尾繊維 / 大腸菌 / 分子内シャペロン
Outline of Final Research Achievements

We over-expressed, purified and crystallized a C-terminal 564 residues of gp34, proximal long tail fiber, of bacteriophage T4. A determined crystal structure of gp34C774-1289 is trimeric fibrous protein which is 18nm long. In detail, there are three-stranded beta-helix and beta-prism domains which are found in other phage tail protein. Thus we conclude that the phage tail proteins are evolved with utilizing the “tail parts domains” to obtain their ability for their infection.
We also purified gp38 as a complex with C-terminal portion of gp37 by co-expression system.

Report

(5 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (20 results)

All 2016 2015 2014 2013 Other

All Int'l Joint Research (1 results) Journal Article (8 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 8 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (11 results) (of which Int'l Joint Research: 1 results)

  • [Int'l Joint Research] Centro Nacional de Biotecnologia - CSIC(スペイン)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Molecular assembly and structure of the bacteriophage T4 tail.2016

    • Author(s)
      Arisaka F, Yap ML, Kanamaru S, Rossmann MG
    • Journal Title

      Biophys Rev.

      Volume: 8 Issue: 4 Pages: 385-396

    • DOI

      10.1007/s12551-016-0230-x

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] NADH oxidase and alkyl hydroperoxide reductase subunit C (peroxiredoxin) from Amphibacillus xylanus form an oligomeric assembly2015

    • Author(s)
      Toshiaki Arai, Shinya Kimata, Daichi Mochizuki, Keita Hara, Tamotsu Zako, Masafumi Odaka, Masafumi Yohda, Fumio Arisaka, Shuji Kanamaru, Takashi Matsumoto, Shunsuke Yajima, Junichi Sato, Shinji Kawasaki, Youichi Niimura
    • Journal Title

      FEBS Open Bio

      Volume: 5 Issue: 1 Pages: 124-131

    • DOI

      10.1016/j.fob.2015.01.005

    • Related Report
      2015 Research-status Report 2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crystallization of the carboxy-terminal region of the bacteriophage T4 proximal long tail fibre protein gp342014

    • Author(s)
      Granell, M., Namura, M., Alvira, S., Garcia-Doval, C., Singh, A. K., Gutsche, I., van Raaij, M. J. & Kanamaru, S.
    • Journal Title

      Acta Crystallogr F Struct Biol Commun

      Volume: 70 Issue: 7 Pages: 970-975

    • DOI

      10.1107/s2053230x14010449

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Intermolecular interactions and conformation of antibody dimers present in IgG1 biopharmaceuticals2014

    • Author(s)
      Iwura T, Fukuda J, Yamazaki K, Kanamaru S, Arisaka F.
    • Journal Title

      J Biochem

      Volume: 155 Issue: 1 Pages: 63-71

    • DOI

      10.1093/jb/mvt095

    • Related Report
      2014 Research-status Report 2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structure and properties of the C-terminal β-helical domain of VgrG protein from Escherichia coli O1572014

    • Author(s)
      Uchida K, Leiman PG, Arisaka F, Kanamaru S.
    • Journal Title

      J Biochem.

      Volume: 155 Issue: 3 Pages: 173-182

    • DOI

      10.1093/jb/mvt109

    • NAID

      40020021439

    • Related Report
      2014 Research-status Report 2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] T.Matsuda、Acetophenone reductase with extreme stability against a high concentration of organic compounds or an elevated temperature2013

    • Author(s)
      T.Yamamoto, Y.Nakata, C.Cao, Y.Sugiyama, Y.Asanuma, S.Kanamaru
    • Journal Title

      Appl. Microbiol. Biotechnol

      Volume: (in press) Issue: 24 Pages: 10413-10421

    • DOI

      10.1007/s00253-013-4801-5

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] The molecular architecture of the bacteriophage T4 neck2013

    • Author(s)
      Fokine A, Zhang Z, Kanamaru S, Bowman VD, Aksyuk AA, Arisaka F, Rao VB, Rossmann MG.
    • Journal Title

      J Mol Biol

      Volume: 425(10) Issue: 10 Pages: 1731-44

    • DOI

      10.1016/j.jmb.2013.02.012

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of Cex1p reveals the mechanism of tRNA trafficking between nucleus and cytoplasm2013

    • Author(s)
      K. Nozawa, R. Ishitani, T. Yoshihisa, M. Sato, F. Arisaka, S. Kanamaru, N. Dohmae, D. Mangroo, B. Senger, H. D. Becker and O. Nureki
    • Journal Title

      Nucleic Acids Research

      Volume: 41 Issue: 6 Pages: 3901-3914

    • DOI

      10.1093/nar/gkt010

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] T4ファージ近位尾繊維蛋白質(gp34)C末端, gp34C745-1289の結晶構造と尾繊維蛋白質複合体の発現2016

    • Author(s)
      金丸周司、名村実公賢、有坂文雄
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場(福岡)
    • Year and Date
      2016-06-07
    • Related Report
      2016 Annual Research Report
  • [Presentation] Stoichiometry and maturation of tail fiber tip host recognition complex of T2 type phage2015

    • Author(s)
      Shuji Kanamaru
    • Organizer
      XXIV Phage-Virus Assembly meeting
    • Place of Presentation
      Les Diablerets, Switzerland
    • Year and Date
      2015-06-07
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Structure and function of receptor binding proteins of T4-type phages and T2-type phages2014

    • Author(s)
      金丸 周司, 籾山 貴大, 西條 要, 有坂 文雄
    • Organizer
      第52回生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Research-status Report
  • [Presentation] T偶数系ファージの尾繊維の構造と機能2014

    • Author(s)
      金丸 周司,名村 実公賢,西條 要,内田 一也,有坂 文雄
    • Organizer
      ファージ研究会
    • Place of Presentation
      三重大学
    • Year and Date
      2014-09-04 – 2014-09-05
    • Related Report
      2014 Research-status Report
  • [Presentation] T2類縁ファージの宿主認識蛋白質複合体の発現精製と性状解析2014

    • Author(s)
      金丸 周司、西條 要、有坂 文雄
    • Organizer
      第14回蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Research-status Report
  • [Presentation] T4ファージgp34C末端側半分の結晶構造から得られたファージ尾繊維に共通の構造2013

    • Author(s)
      金丸 周司, 名村 実公賢, 有坂 文雄
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都国際会館 (京都)
    • Related Report
      2013 Research-status Report
  • [Presentation] 病原性大腸菌O-157のタイプ6分泌系のVgrG1蛋白質のC末端断片のX線結晶構造2013

    • Author(s)
      内田 一也, 金丸 周司, Leiman Petr, 有坂 文雄
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都国際会館 (京都)
    • Related Report
      2013 Research-status Report
  • [Presentation] Intermolecular interactions and conformation of antibody dimers present in IgG1 biopharmaceuticals2013

    • Author(s)
      井浦 貴文, 福田 潤, 山﨑 勝由, 金丸 周司, 有坂 文雄
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都国際会館 (京都)
    • Related Report
      2013 Research-status Report
  • [Presentation] T4ファージ基盤終結蛋白質gp48のSlyD融合蛋白質発現系の構築2013

    • Author(s)
      新司 雄也, 金丸周司, 有坂文雄
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      パシフィコ横浜 (神奈川)
    • Related Report
      2013 Research-status Report
  • [Presentation] The crystal structure and the stability of C-terminal fragment of gp34, proximal half of long tail fiber of bacteriophage T42013

    • Author(s)
      Meritxell Granell, Mikiyoshi Namura, Sara Alvira-de Celis, Carmela Garcia-Doval, Abhimanyu K. Singh, Mark J. van Raaij, Fumio Arisaka, Shuji Kanamaru
    • Organizer
      XXIII Biennial Conference on Phage/Virus Assembly
    • Place of Presentation
      UCLA Lake Arrowhead Conference Center & Mountain Resort (米国)
    • Related Report
      2013 Research-status Report
  • [Presentation] T4ファージホーリン・アンチホーリンの構造と機能2013

    • Author(s)
      金丸周司, 伊藤悠太, 有坂文雄
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      とりぎん文化会館 (鳥取)
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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