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The analysis of the development and the function of cerebellar neural circuitry by using zebrafish

Research Project

Project/Area Number 25440104
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Developmental biology
Research InstitutionNagoya University

Principal Investigator

Shimizu Takashi  名古屋大学, 生物機能開発利用研究センター, 准教授 (50324760)

Project Period (FY) 2013-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2013: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords小脳 / 神経発生 / ゼブラフィッシュ / 恐怖条件付け学習 / 顆粒細胞 / 条件付け恐怖学習 / 神経 / 細胞分化 / 細胞分裂 / 細胞増殖
Outline of Final Research Achievements

The cerebellum plays an important role for motor learning and classical fear conditioning. To understand the genes that control the generation of cerebellar granule cells and their axogenesis, I investigated two zebrafish mutants. The cranio facial development protein 1 gene controlled granule cell defferentiation by switching proliferation state to differentiation state in the precursors. The component of beaement-membrane, type IV collagens, regulated the axogenesis. I established a method for the classical fear conditioning paradigm by using zebrafish larva. The 20 days zebrafish larvae acquired the conditioned fear responses. Inhibition of granule-cell transmission impaired the recovery from conditioned responses. I found conditioning-dependent changes in granule cell encoding. There were two types of conditioning-associated neurons in the cerebellum. These results indicate that granule cells control the recovery from conditioned fear responses in zebrafish.

Report

(5 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (37 results)

All 2017 2016 2015 2014 2013 Other

All Journal Article (5 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 4 results,  Acknowledgement Compliant: 3 results,  Open Access: 1 results) Presentation (28 results) Remarks (4 results)

  • [Journal Article] Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum.2017

    • Author(s)
      Takeuchi M, Yamaguchi S, Sakakibara Y, Hayashi T, Matsuda K, Hara Y, Tanegashima C, Shimizu T, Kuraku S, Hibi M.
    • Journal Title

      Journal of Comparative Neurology

      Volume: 525 Issue: 7 Pages: 1558-1585

    • DOI

      10.1002/cne.24114

    • NAID

      120006369328

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Evolutionary mechanisms that generate morphology and neural-circuit diversity of the cerebellum.2017

    • Author(s)
      Hibi, M., Matsuda, K., Takeuchi, M., Shimizu, T., and Murakami, Y.
    • Journal Title

      Dev. Growth Differ.

      Volume: in press

    • NAID

      120006406681

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Responses of cerebellar Purkinje cells during fictive optomotor behavior in larval zebrafish.2016

    • Author(s)
      Scalise K, Shimizu T, Hibi M, Sawtell NB.
    • Journal Title

      Journal of Neurophysiology

      Volume: 116 Issue: 5 Pages: 2067-2080

    • DOI

      10.1152/jn.00042.2016

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] ype IV collagen controls the axogenesis of cereberr granule cells by regulating basement membrane integrity in zebrafish.2015

    • Author(s)
      Takeuchi, M., Yamaguchi, S., Yonemura, S., Kakiguchi, K., Sato, Y., Higashiyama, T., Shimizu, T., and, Hibi, M.
    • Journal Title

      PLoS genet.

      Volume: 11 Issue: 10 Pages: e1005587-e1005587

    • DOI

      10.1371/journal.pgen.1005587

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Establishment of Gal4 transgenic zebrafish lines for analysis of development of cerebellar neural circuitry2015

    • Author(s)
      Takeuchi, M., Matsuda, K., Yamaguchi, S., Asakawa, K., Miyasaka, N., Lal, P., Yoshihara, Y., Koga, A., Kawakami, K., Shimizu, T., and Hibi, M.
    • Journal Title

      Developmental Biology

      Volume: 397 Issue: 1 Pages: 1-17

    • DOI

      10.1016/j.ydbio.2014.09.030

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] ゼブラフィッシュ恐怖条件付け学習における小脳の役割2016

    • Author(s)
      清水貴史
    • Organizer
      日本発生生物学会 秋季シンポジウム
    • Place of Presentation
      三島
    • Year and Date
      2016-10-19
    • Related Report
      2016 Annual Research Report
  • [Presentation] Roles of zebrafish cerebellar neurons in classical fear conditioning.2016

    • Author(s)
      Matsuda, K., Yoshida, M., Kawakami, K., Hibi, M., Shimizu, T.
    • Organizer
      第22回小型魚類研究会
    • Place of Presentation
      岡崎
    • Year and Date
      2016-08-20
    • Related Report
      2016 Annual Research Report
  • [Presentation] Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum.2016

    • Author(s)
      Takeuchi, M., Yamaguchi, S., Sakakibara, Y., Hayashi, T., Matsuda, K., Hara, Y., Hayashi, T., Kuraku, S., Shimizu, T., and Hibi, M.
    • Organizer
      第22回小型魚類研究会
    • Place of Presentation
      岡崎
    • Year and Date
      2016-08-20
    • Related Report
      2016 Annual Research Report
  • [Presentation] Roles of Ptf1a and Gsx2 in development of Purkinje cells and inferior olive nucleus neurons in zebrafish.2016

    • Author(s)
      Ito, T., Takeuchi, M., Sakagami, M., Shimizu, T., and Hibi, M.
    • Organizer
      第22回小型魚類研究会
    • Place of Presentation
      岡崎
    • Year and Date
      2016-08-20
    • Related Report
      2016 Annual Research Report
  • [Presentation] Reelin signaling controls the layer formation of cerebellum and optic tectum in zebrafish.2016

    • Author(s)
      Nimura, T., Di, Donato V., Hayashi, T., Takeuchi, M., Shimizu, T., Del Bene, F., and Hibi, M.
    • Organizer
      第22回小型魚類研究会
    • Place of Presentation
      岡崎
    • Year and Date
      2016-08-20
    • Related Report
      2016 Annual Research Report
  • [Presentation] Zebrafish cerebellar neural circuitry is involved in the classical fear conditioning.2016

    • Author(s)
      Matsuda, K., Yoshida, M., Kawakami, K., Hibi, M., Shimizu, T.
    • Organizer
      第39回日本神経科学大会
    • Place of Presentation
      横浜
    • Year and Date
      2016-07-20
    • Related Report
      2016 Annual Research Report
  • [Presentation] Basement membrane stability is important for the axogenesis of cerebellar granule cells in zebrafish.2015

    • Author(s)
      Takeuchi, M., Yamaguchi, S., Hayashi, T., Sakakibara, Y., Matsuda, K., Hara, Y., Hayashi T., Kuraku, S., Shimizu, T., and Hibi, M.
    • Organizer
      第21回小型魚類研究会
    • Place of Presentation
      吹田
    • Year and Date
      2015-09-19
    • Related Report
      2015 Research-status Report
  • [Presentation] Transcriptome analysis of zebrafish cerebellar Purkinje cells and mormyrid fish cerebellum.2015

    • Author(s)
      Sakakibara, Y.*, Matsuda, K.*, Hayashi, T., Yamaguchi, S., Takeuchi, M., Ito, T. , Hara, Y., Hayashi T., Kuraku, S., Shimizu, T., and Hibi, M.
    • Organizer
      第21回小型魚類研究会
    • Place of Presentation
      吹田
    • Year and Date
      2015-09-19
    • Related Report
      2015 Research-status Report
  • [Presentation] Zebrafish cerebellum is involved in the classical fear conditioning.2015

    • Author(s)
      Matsuda, K., Yoshida, M., Asakawa, K., Nakai, J., Kawakami, K., Hibi, M., and Shimizu, T.
    • Organizer
      第21回小型魚類研究会
    • Place of Presentation
      吹田
    • Year and Date
      2015-09-19
    • Related Report
      2015 Research-status Report
  • [Presentation] Roles of zebrafish cerebellar neural circuitry in classical fear conditioning.2015

    • Author(s)
      Matsuda, K., Yoshida, M., Asakawa, K., Ohkura, M., Nakai, J., Kawakami, K., Hibi, M., and Shimizu, T.
    • Organizer
      第38回日本神経科学大会
    • Place of Presentation
      神戸
    • Year and Date
      2015-07-28
    • Related Report
      2015 Research-status Report
  • [Presentation] nuclear protein Cfdp1 regulates differentiateon of granule cells in zebrafish cerebellum.2015

    • Author(s)
      Shimizu, T., Kani, S., Bae, Y.K., Sun, X. and Hibi, M.
    • Organizer
      第38回日本神経科学大会
    • Place of Presentation
      神戸
    • Year and Date
      2015-07-28
    • Related Report
      2015 Research-status Report
  • [Presentation] Transcriptome analysis of granule cells and Purkinje cells in zebrafish cerebellum.2015

    • Author(s)
      Takeuchi, M., Yamaguchi, S., Hayashi, T., Sakakibara, Y., Matsuda, K., Hara, Y.,Hayashi, T., Kuraku, S., Shimizu, T., and Hibi, M.
    • Organizer
      第38回日本神経科学大会
    • Place of Presentation
      神戸
    • Year and Date
      2015-07-28
    • Related Report
      2015 Research-status Report
  • [Presentation] Evolution and development of cerebellar neural circuitry in teleosts.2015

    • Author(s)
      Hibi, M., Takeuchi, M., Yamaguchi, S., Matsuda, K., Hayashi, T., Hara, Y., Hayashi, T., Sakakibara, Y., Yoshida, M., Kuraku, S., and Shimizu, T.
    • Organizer
      第48回日本発生生物学会大会
    • Place of Presentation
      つくば
    • Year and Date
      2015-06-02
    • Related Report
      2015 Research-status Report
  • [Presentation] Integrity of basement membrane is important for axogenesis of cerebellar granule cells.2015

    • Author(s)
      Takeuchi, M., Yamaguchi, S., Hayashi, T., Yonemura, S., Hara, Y., Hayashi T., Kuraku, S., Shimizu, T., and Hibi, M.
    • Organizer
      第48回日本発生生物学会大会
    • Place of Presentation
      つくば
    • Year and Date
      2015-06-02
    • Related Report
      2015 Research-status Report
  • [Presentation] A nuclear protein Cfdp1 regulates differentiateon of granule cells in zebrafish cerebellum.2015

    • Author(s)
      Shimizu, T., Kani, S., Bae, Y.K., Sun, X., and Hibi, M.
    • Organizer
      第48回日本発生生物学会大会
    • Place of Presentation
      つくば
    • Year and Date
      2015-06-02
    • Related Report
      2015 Research-status Report
  • [Presentation] Visualizing development and morphology of cerebellar granule axons in zebrafish.2014

    • Author(s)
      Yamaguchi, S., Takeuchi, M., Hayashi, T., Asakawa, K., Hara, Y., Hayashi, T, Kuraku, H., Kawakami, K., Shimizu, T., and Hibi, M.
    • Organizer
      第20回小型魚類研究会
    • Place of Presentation
      東京
    • Year and Date
      2014-09-20 – 2014-09-21
    • Related Report
      2014 Research-status Report
  • [Presentation] Roles of zebrafish cerebellar neural circuitry in the classical fear conditioning.2014

    • Author(s)
      Matsuda, K., Yoshida, M., Takeuchi, M., Asakawa, K., Ohkura, M., Miyasaka, N., Yoshihara, Y., Nakai, J., Kawakami, K., Hibi, M., and Shimizu, T.
    • Organizer
      第20回小型魚類研究会
    • Place of Presentation
      東京
    • Year and Date
      2014-09-20 – 2014-09-21
    • Related Report
      2014 Research-status Report
  • [Presentation] Precise assembly of the basement membrane is important for the axogenesis of cerebellar granule cells.2014

    • Author(s)
      Takeuchi, Yamaguchi, S., Yonemura, S., Asakawa, K., Kawakami, K., Takada, S., Shimizu, T., and Hibi, M.
    • Organizer
      第20回小型魚類研究会
    • Place of Presentation
      東京
    • Year and Date
      2014-09-20 – 2014-09-21
    • Related Report
      2014 Research-status Report
  • [Presentation] Basement membrane structure is important for axogenesis of cerebellar granule cells.2014

    • Author(s)
      Takeuchi, M., Yonemura, S., Asakawa, K., Kawakami, K., Takada, S., Kuraku, S., Hayashi, T., Yamaguchi, S., Shimizu, T., and Hibi, M.
    • Organizer
      第37回日本神経科学大会
    • Place of Presentation
      横浜
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Research-status Report
  • [Presentation] Control of axon guidance of cerebellar granule cells by the basement membrane.2014

    • Author(s)
      Takeuchi, M., Yonemura, S., Asakawa, K., Kawakami, K., Takada, S., Kuraku, S., Hayashi, T., Yamaguchi, S.*, Shimizu, T., and Hibi, M.
    • Organizer
      11th International Conference on Zebrafish Development and Genetics.
    • Place of Presentation
      Wisconsin, USA
    • Year and Date
      2014-06-24 – 2014-06-28
    • Related Report
      2014 Research-status Report
  • [Presentation] issection of cerebellar neural circuitry with zebrafish Gal4 gene/enhancer trap lines.2014

    • Author(s)
      Matsuda, K., Takeuchi, M., Asakawa, K., Ohkura, M., Miyasaka, N., Yoshihara, Y., Hayashi, T., Kuraku, S., Kawakami, K., Hibi, M., and Shimizu, T.
    • Organizer
      第47回日本発生生物学会大会
    • Place of Presentation
      名古屋
    • Year and Date
      2014-05-27 – 2014-05-30
    • Related Report
      2014 Research-status Report
  • [Presentation] Precise axogenesis of the cerebellar granule cells requires interaction between their axons and the basement membrane.2014

    • Author(s)
      Takeuchi, M., Yonemura, S., Asakwa, K., Kawakami, K., Takada, S., Shimizu, T., and Hibi, M.
    • Organizer
      第47回日本発生生物学会大会
    • Place of Presentation
      名古屋
    • Year and Date
      2014-05-27 – 2014-05-30
    • Related Report
      2014 Research-status Report
  • [Presentation] Moving microtubule-mediated dorsal determination.2013

    • Author(s)
      Hino, H., Seki, R., Shimizu, T., Pelegri, F., and Hibi, M.
    • Organizer
      第19回小型魚類研究会
    • Place of Presentation
      仙台
    • Related Report
      2013 Research-status Report
  • [Presentation] Functional analysis of zebrafish cerebellar neural circuitry in classical conditioning.2013

    • Author(s)
      Matsuda, K., Takeuchi, M., Asakawa, K., Yoshida, M., Ohkura, M., Miyasaka, N., Yoshihara, Y., Nakai, J., Kawakami, K., Hibi, M., and Shimizu, T.
    • Organizer
      第19回小型魚類研究会
    • Place of Presentation
      仙台
    • Related Report
      2013 Research-status Report
  • [Presentation] Basement membrane-dependent control of axogenesis of cerebellar granule cells.2013

    • Author(s)
      Takeuchi, M., Yonemura, S., Asakawa, K., Kawakami, K., Takada, S., Shimizu, T., and Hibi, M.
    • Organizer
      第19回小型魚類研究会
    • Place of Presentation
      仙台
    • Related Report
      2013 Research-status Report
  • [Presentation] Development of cerebellar granule cell axons in zebrafish.2013

    • Author(s)
      Yamaguchi, S., Takeuchi, M., Asakawa, K., Kawakami, K., Shimizu, T., and Hibi, M.
    • Organizer
      第46回日本発生生物学会大会
    • Place of Presentation
      松江
    • Related Report
      2013 Research-status Report
  • [Presentation] Involvement of microtubule-dependent transport of Wnt signaling components in zebrafish dorsal determination.2013

    • Author(s)
      Hino, H., Seki, R., Shimizu, T., Long, T.D., Sampath, K., and Hibi, M.
    • Organizer
      第46回日本発生生物学会大会
    • Place of Presentation
      松江
    • Related Report
      2013 Research-status Report
  • [Presentation] Basement membrane integrity is required for axogenesis of cerebellar granule cells.2013

    • Author(s)
      Takeuchi, M., Yonemura, S., Asakawa, K., Kawakami, K., Takada, S., Shimizu, T., and Hibi, M.
    • Organizer
      第46回日本発生生物学会大会
    • Place of Presentation
      松江
    • Related Report
      2013 Research-status Report
  • [Remarks] 名古屋大学生物機能開発利用研究センター動物器官機能学ホームページ

    • URL

      http://bbc.agr.nagoya-u.ac.jp/~junkei/

    • Related Report
      2016 Annual Research Report
  • [Remarks] IV型コラーゲンは基底膜の整合性を保つことで小脳顆粒細胞の軸索形成を制御している

    • URL

      http://www.bio.nagoya-u.ac.jp/paper/2016-26/08.html

    • Related Report
      2015 Research-status Report
  • [Remarks] 名古屋大学生物機能開発利用研究センター動物器官機能研究分野

    • URL

      http://bbc.agr.nagoya-u.ac.jp/~junkei/index.html

    • Related Report
      2014 Research-status Report
  • [Remarks] 名古屋大学生物機能開発利用研究センター動物器官機能研究分野

    • URL

      http://bbc.agr.nagoya-u.ac.jp/~junkei/index.html

    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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