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Elucidation of physiological roles of translational regulation mediated by upstream open reading frame-encoded peptides in plants

Research Project

Project/Area Number 25440122
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Plant molecular biology/Plant physiology
Research InstitutionHokkaido University

Principal Investigator

ONOUCHI Hitoshi  北海道大学, (連合)農学研究科(研究院), 准教授 (50322839)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
KeywordsuORF / 翻訳制御 / リボソーム / 新生ペプチド / シロイヌナズナ / ポプラ
Outline of Final Research Achievements

Upstream open reading frames (uORFs) are small ORFs present in the 5′ untranslated regions of many eukaryotic mRNAs. Some uORFs encode regulatory peptides that repress translation of the main ORF. Such translational regulation mediated by a uORF-encoded peptide was considered to be an exceptional regulatory mechanism. However, we recently identified a variety of genes whose expression is regulated by a uORF-encoded peptide, suggesting that uORF peptide-mediated translational regulation plays a wider physiological role than previously thought. In this study, we investigated physiological roles of the regulatory uORF peptides that we identified, and found a uORF involved in developmental regulation and a uORF that specifically represses main ORF expression in actively proliferating cells. Furthermore, this study revealed a novel mechanism of translational regulation, which involves two uORF-encoded peptides that have opposite regulatory roles.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (28 results)

All 2016 2015 2014 2013 Other

All Journal Article (10 results) (of which Peer Reviewed: 9 results,  Open Access: 4 results,  Acknowledgement Compliant: 4 results) Presentation (17 results) (of which Invited: 1 results) Remarks (1 results)

  • [Journal Article] 止まって働くリボソーム 新生ペプチドが司る植物の細胞内恒常性維持機構2016

    • Author(s)
      山下由衣,尾之内均,内藤哲
    • Journal Title

      化学と生物

      Volume: 54 Pages: 191-197

    • NAID

      130005241202

    • Related Report
      2015 Annual Research Report
  • [Journal Article] An upstream open reading frame represses expression of a tomato homologue of Arabidopsis <i>ANAC096</i>, a NAC domain transcription factor gene, in a peptide sequence-dependent manner2015

    • Author(s)
      Noh A. L., Watanabe S., Takahashi H., Naito S., and Onouchi H.
    • Journal Title

      Plant Biotechnology

      Volume: 32 Issue: 2 Pages: 157-163

    • DOI

      10.5511/plantbiotechnology.15.0519a

    • NAID

      130005085991

    • ISSN
      1342-4580, 1347-6114
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of novel Arabidopsis thaliana upstream open reading frames that control expression of the main coding sequences in a peptide sequence-dependent manner.2015

    • Author(s)
      Ebina I, Takemoto-Tsutsumi M, Watanabe S, Koyama H, Endo Y, Kimata K, Igarashi T, Murakami K, Kudo R, Ohsumi A, Noh AL, Takahashi H, Naito S, Onouchi H
    • Journal Title

      Nucleic Acids Research

      Volume: 43 Issue: 3 Pages: 1562-1576

    • DOI

      10.1093/nar/gkv018

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network.2014

    • Author(s)
      Sriyudthsak K, Sawada Y, Chiba Y, Yamashita Y, Kanaya S, Onouchi H, Fujiwara T, Naito S, Voit EO, Shiraishi F, Hirai MY
    • Journal Title

      BMC Systems Biology

      Volume: 8 Issue: S5

    • DOI

      10.1186/1752-0509-8-s5-s4

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The N-terminal cleavable pre-sequence encoded in the first exon of cystathionine γ-synthase contains two different functional domains for chloroplast targeting and regulation of gene expression.2014

    • Author(s)
      Hagiwara-Komoda Y, Sugiyama T, Yamashita Y, Onouchi H, Naito S
    • Journal Title

      Plant and Cell Physiology

      Volume: 55 Issue: 10 Pages: 1779-1779

    • DOI

      10.1093/pcp/pcu110

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Polyamine-responsive ribosomal arrest at the stop codon of an upstream open reading frame of the AdoMetDC1 gene triggers nonsense-mediated mRNA decay in Arabidopsis thaliana.2014

    • Author(s)
      Uchiyama-Kadokura N, Murakami K, Takemoto M, Koyanagi N, Murota K, Naito S, Onouchi H
    • Journal Title

      Plant and Cell Physiology

      Volume: 55 Issue: 9 Pages: 1556-1567

    • DOI

      10.1093/pcp/pcu086

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Ribosomes in a Stacked Array : Elucidation of the Step in Translation Elongation at Which They Are Stalled During S-Adenosyl-L-methionine-Induced Translation Arrest of CGS1 mRNA2014

    • Author(s)
      Yui Yamashita, Yoshitomo Kadokura, Naoyuki Sotta, Toru Fujiwara, Ichigaku Takigawa, Akiko Satake, Hitoshi Onouchi, and Satoshi Naito
    • Journal Title

      Journal of Biological Chemistry

      Volume: (印刷中) Issue: 18 Pages: 12693-12704

    • DOI

      10.1074/jbc.m113.526616

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Ribosomes in a Stacked Array: Elucidation of the Step in Translation Elongation at Which They Are Stalled During S-Adenosyl-L-methionine-Induced Translation Arrest of CGS1 mRNA.2014

    • Author(s)
      Yamashita Y, Kadokura Y, Sotta N, Fujiwara T, Takigawa I, Satake A, Onouchi H, Naito S.
    • Journal Title

      J. Biol. Chem.

      Volume: 未定

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] A halt in poly(A) shortening during <i>S</i>-adenosyl-L-methionine-induced translation arrest in <i>CGS1</i> mRNA of <i>Arabidopsis thaliana</i>2013

    • Author(s)
      Yui Yamashita, Ingrid Lambein, Soko Kobayashi, Hitoshi Onouchi, Yukako Chiba and Satoshi Naito
    • Journal Title

      Genes & Genetic Systems

      Volume: 88 Issue: 4 Pages: 241-249

    • DOI

      10.1266/ggs.88.241

    • NAID

      130003390805

    • ISSN
      1341-7568, 1880-5779
    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] SS-mPMG and SS-GA : tools for finding pathways and dynamic simulation of metabolic networks.2013

    • Author(s)
      Tetsuo Katsuragi, Naoaki Ono, Keiichi Yasumoto, Masami Y. Hirai, Kansuporn Sriyudthsak, Yuji Sawada, Yui Yamashita, Yukako Chiba, Hitoshi Onouchi, Toru Fujiwara, Satoshi Naito
    • Journal Title

      Plant and Cell Physiology

      Volume: 54 Issue: 5 Pages: 728-739

    • DOI

      10.1093/pcp/pct052

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] 維管束形成を制御するLONESOME HIGHWAY遺伝子のuORFペプチドが介する翻訳制御機構2016

    • Author(s)
      大角有里沙
    • Organizer
      第57回日本植物生理学会年会
    • Place of Presentation
      岩手大学(岩手県・盛岡市)
    • Year and Date
      2016-03-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] リボソームアレストを引き起こす被子植物uORFの探索2016

    • Author(s)
      林憲哉
    • Organizer
      第57回日本植物生理学会年会
    • Place of Presentation
      岩手大学(岩手県・盛岡市)
    • Year and Date
      2016-03-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] 制御ペプチドをコードする二つのuORFが関与する翻訳制御機構2015

    • Author(s)
      工藤凜
    • Organizer
      第17回日本RNA学会年会
    • Place of Presentation
      ホテルライフォート札幌(北海道・札幌市)
    • Year and Date
      2015-07-15
    • Related Report
      2015 Annual Research Report
  • [Presentation] リボソームアレストを引き起こす被子植物のCPuORFの探索と機能解析2015

    • Author(s)
      林憲哉
    • Organizer
      第17回日本RNA学会年会
    • Place of Presentation
      ホテルライフォート札幌(北海道・札幌市)
    • Year and Date
      2015-07-15
    • Related Report
      2015 Annual Research Report
  • [Presentation] シロイヌナズナCGS1遺伝子の翻訳アレストにおける新生ペプチドの収縮とリボソーム出口トンネルの研究2015

    • Author(s)
      大橋悠文
    • Organizer
      第56回日本植物生理学会年会
    • Place of Presentation
      東京農業大学(東京)
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Research-status Report
  • [Presentation] シロイヌナズナにおける最小uORFを介したホウ素依存的なリボソーム停滞によるmRNA分解・翻訳効率の制御機構2015

    • Author(s)
      田中真幸
    • Organizer
      第56回日本植物生理学会年会
    • Place of Presentation
      東京農業大学(東京)
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Research-status Report
  • [Presentation] uORFがコードする新生ペプチドによる翻訳制御2014

    • Author(s)
      工藤凜
    • Organizer
      2014年度北海道植物学会大会
    • Place of Presentation
      北海道大学(札幌)
    • Year and Date
      2014-12-22
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] BIOINFORMATIC IDENTIFICATION METHOD OF EVOLUTIONAL RANGES FOR POTENTIAL FUNCTIONAL MOLECULES ON GENOMES2014

    • Author(s)
      Hiro Takahashi
    • Organizer
      International Conference ‘THE PROBLEM OF THE ORIGIN OF LIFE’
    • Place of Presentation
      Presidium of the Russian Academy of Sciences (Moscow)
    • Year and Date
      2014-09-22 – 2014-09-26
    • Related Report
      2014 Research-status Report
  • [Presentation] 5'非翻訳領域にコードされた種間保存性ペプチドの網羅的探索・進化保存性評価手法の開発と様々な種への応用2014

    • Author(s)
      高橋広夫
    • Organizer
      第66回日本生物工学会大会
    • Place of Presentation
      札幌コンベンションセンター(札幌)
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Research-status Report
  • [Presentation] 時系列メタボロームデータを用いた大規模代謝反応システムの解析2014

    • Author(s)
      Kansuporn Sriyudthsak
    • Organizer
      第32回日本植物細胞分子生物学会
    • Place of Presentation
      アイーナ(盛岡)
    • Year and Date
      2014-08-21 – 2014-08-22
    • Related Report
      2014 Research-status Report
  • [Presentation] シロイヌナズナCGS1 mRNAにおける翻訳アレストに先立って起こるリボソームの状態変化2014

    • Author(s)
      山下由衣
    • Organizer
      第16回日本RNA学会
    • Place of Presentation
      ウィンクあいち(名古屋)
    • Year and Date
      2014-07-23 – 2014-07-25
    • Related Report
      2014 Research-status Report
  • [Presentation] 最小uORF上でのホウ素依存的なリボソーム停滞を介した遺伝子発現制御2014

    • Author(s)
      田中真幸
    • Organizer
      第16回日本RNA学会
    • Place of Presentation
      ウィンクあいち(名古屋)
    • Year and Date
      2014-07-23 – 2014-07-25
    • Related Report
      2014 Research-status Report
  • [Presentation] 複数のuORFが関与するuORFペプチド配列依存的な翻訳制御機構2014

    • Author(s)
      尾之内均
    • Organizer
      第55回日本植物生理学会年会
    • Place of Presentation
      富山大学(富山市)
    • Related Report
      2013 Research-status Report
  • [Presentation] ホウ素に応答してリボソームは最小uORF、AUGUAAで停止する。2014

    • Author(s)
      田中真幸
    • Organizer
      第55回日本植物生理学会年会
    • Place of Presentation
      富山大学(富山市)
    • Related Report
      2013 Research-status Report
  • [Presentation] uORFにコードされるペプチドによる翻訳制御の植物種間における多様性2014

    • Author(s)
      工藤凜
    • Organizer
      第55回日本植物生理学会年会
    • Place of Presentation
      富山大学(富山市)
    • Related Report
      2013 Research-status Report
  • [Presentation] uORFにコードされるペプチドにより翻訳が制御される植物遺伝子の探索2013

    • Author(s)
      尾之内均
    • Organizer
      第31回日本植物細胞分子生物学会(札幌)大会・シンポジウム
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2013 Research-status Report
  • [Presentation] uORFにコードされるペプチドにより翻訳が制御される植物遺伝子の探索2013

    • Author(s)
      村上佳鈴
    • Organizer
      日本植物学会第77回大会
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2013 Research-status Report
  • [Remarks] 北海道大学 農学部 大学院農学院 大学院生命科学院 大学院農学研究院 分子生物学研究室 トップページ

    • URL

      http://www.agr.hokudai.ac.jp/arabi/index.html

    • Related Report
      2015 Annual Research Report

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Published: 2014-07-25   Modified: 2019-07-29  

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