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Phylogenetic relationships between the Japanese species of the monocotyledons for establishing a classificatory system from orders to species based on molecular data

Research Project

Project/Area Number 25440207
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biodiversity/Systematics
Research InstitutionKyoto University

Principal Investigator

Tamura Minoru N.  京都大学, 理学研究科, 教授 (20227292)

Co-Investigator(Kenkyū-buntansha) FUSE Shizuka  京都大学, 大学院理学研究科, 助教 (30344386)
YUKAWA Tomohisa  独立行政法人国立科学博物館, 植物研究部, グループ長 (50280524)
KOBA Hidehisa  桜美林大学, 自然科学系, 教授 (50221966)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords単子葉植物 / 分子系統解析
Outline of Final Research Achievements

Molecular phylogenetic analyses of the monocotyledons were extensively performed these days, and relationships between the orders, families and genera were almost clarified. On the other hand, relationships between the species were mostly still unknown. For better understanding of relationships between the Japanese species of the monocotyledons, we tried to construct a detailed molecular phylogenetic tree of the Japanese species of the monocotyledons, and attempted to reevaluate the diagnostic morphological characters of the Japanese species of the monocotyledons.
In the present study, we obtained interesting results especially on Liliaceae, Colchicaceae, Smilacaceae, Dioscoreaceae, Orchidaceae, Eriocaulaceae, Cyperaceae and Poaceae.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (54 results)

All 2016 2015 2014 2013 Other

All Journal Article (26 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 23 results,  Acknowledgement Compliant: 6 results,  Open Access: 3 results) Presentation (19 results) (of which Int'l Joint Research: 4 results,  Invited: 5 results) Book (9 results)

  • [Journal Article] Evolutionary timescale of monocots determined by the fossilized birth-death model using a large number of fossil records2016

    • Author(s)
      Eguchi, S. and M. N. Tamura
    • Journal Title

      Evolution

      Volume: - Issue: 5 Pages: 1136-1144

    • DOI

      10.1111/evo.12911

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Biosystematic studies on the genus Heloniopsis (Melanthiaceae) I. Phylogeny inferred from plastid DNA sequences and taxonomic implications2016

    • Author(s)
      Fuse, S. and M. N. Tamura
    • Journal Title

      Nordic Journal of Botany

      Volume: -

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] How do fungal partners affect the evolution and habitat preferences of mycoheterotrophic plants? A case study in Gastrodia (Orchidaceae)2016

    • Author(s)
      Kinoshita, A., Y. Ogura-Tsujita, H. Umata, H. Sato, T. Hashimoto and T. Yukawa
    • Journal Title

      American Journal of Botany

      Volume: 103 Issue: 2 Pages: 207-220

    • DOI

      10.3732/ajb.1500082

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Oreorchis coreana (Orchidaceae), a new addition to the flora of Japan2016

    • Author(s)
      Takashima, M., J. Hasegawa and T. Yukawa
    • Journal Title

      Acta Phytotaxonomica et Geobotanica

      Volume: 67 Pages: 61-66

    • NAID

      110010042599

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] スズメノナギナタParapholis incurva (L.) C. E. Hubb.の徳島県への帰化2016

    • Author(s)
      茨木 靖・木場英久
    • Journal Title

      徳島県立博物館研究報告

      Volume: 26 Pages: 105-106

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Insect pollination of Carex (Cyperaceae) from Yunnan, SW China2015

    • Author(s)
      Yano, O., S. Fuse, T. Fujiki, M. N. Tamura, M. Yago, M. Sueyoshi, Y.-P. Yang and H. Ikeda
    • Journal Title

      Journal of Japanese Botany

      Volume: 90 Pages: 407-412

    • NAID

      40020710661

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Phylogeny and classification of the East Asian Amitostigma alliance (Orchidaceae: Orchideae) based on six DNA markers2015

    • Author(s)
      Tang, Y., T. Yukawa, R. M. Bateman, H. Jiang and H. Peng
    • Journal Title

      BMC Evolutionary Biology

      Volume: 15 Issue: 1 Pages: 96-96

    • DOI

      10.1186/s12862-015-0376-3

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Studies in Asian Nervilia (Orchidaceae) V: N. futago, a cryptic new species from southwest Japan confirmed by morphological, cytological and molecular analyses2015

    • Author(s)
      Gale, S. W., J. Li, A. Kinoshita and T. Yukawa
    • Journal Title

      Systematic Botany

      Volume: 40 Issue: 2 Pages: 413-425

    • DOI

      10.1600/036364415x688772

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] An orchid checklist of Mt. Popa, central Myanmar2015

    • Author(s)
      Tanaka, N., T. Yukawa, K. M. Htwe and J. Murata
    • Journal Title

      Bulletin of the National Museum of Nature and Science Series B (Botany)

      Volume: 41 Pages: 69-89

    • NAID

      40020570015

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Molecular and morphological evidence for a new grass genus, Dupontiopsis (Poaceae tribe Poeae subtribe Poinae s.l.), endemic to alpine Japan, and implications for the reticulate origin of Dupontia and Arctophila within Poinae s.l.2015

    • Author(s)
      Soreng, R. J., L. J. Gillespie, H. Koba, E. Boudko & R. D. Bull
    • Journal Title

      Journal of Systematics and Evolution

      Volume: 53 Issue: 2 Pages: 138-162

    • DOI

      10.1111/jse.12146

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] 日本国内におけるヨシススキErianthus arundinaceus (Retz.) Jeswiet.(イネ科)の分布と生育状況について2015

    • Author(s)
      茨木靖・大森威宏・勝山輝男・木下覺・久米修・木場英久・齋藤政美・野津貴章
    • Journal Title

      植物地理・分類研究

      Volume: 62 Pages: 85-92

    • NAID

      120006580747

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polygonatum dolichocarpum (Asparagaceae), a new species from Yunnan, China2014

    • Author(s)
      Tamura, M. N., Fuse, S., Li, H., Yang, Y.-P., Meng, Y. and Ikeda, H.
    • Journal Title

      Acta Phytotaxonomica et Geobotanica

      Volume: 65 Pages: 157-159

    • NAID

      110009922441

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Significant difference in mycorrhizal specificity between an autotrophic and its sister mycoheterotrophic plant species of Petrosaviaceae.2014

    • Author(s)
      Yamato M, Ogura-Tsujita Y, Takahashi H, Yukawa T
    • Journal Title

      Journal of Plant Research

      Volume: 127 Issue: 6 Pages: 685-693

    • DOI

      10.1007/s10265-014-0661-z

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Nomenclatural changes in the genus Calanthe (Orchidaceae)2014

    • Author(s)
      Yukawa, T. and P. J. Cribb
    • Journal Title

      Bulletin of the National Museum of Nature and Science Series B (Botany)

      Volume: 40 Pages: 145-151

    • NAID

      40020318749

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Molecular phylogenetics and character evolution of morphologically diverse group, Dendrobium section Dendrobium and allies2014

    • Author(s)
      Takamiya T., P. Wongsawad, A. Sathapattayanon, N. Tajima, S. Suzuki, S. Kitamura, N. Shioda, T. Handa, S. Kitanaka, H. Iijima and T. Yukawa
    • Journal Title

      AoB PLANTS

      Volume: 6 Issue: 0 Pages: plu045-plu045

    • DOI

      10.1093/aobpla/plu045

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] 菌従属栄養植物の系統と進化2014

    • Author(s)
      遊川知久
    • Journal Title

      植物科学最前線

      Volume: 5 Pages: 85-92

    • Related Report
      2014 Research-status Report
  • [Journal Article] 菌従属栄養植物の進化に伴う菌根菌相のシフト2014

    • Author(s)
      辻田有紀・横山潤・三吉一光・遊川知久
    • Journal Title

      植物科学最前線

      Volume: 5 Pages: 130-138

    • Related Report
      2014 Research-status Report
  • [Journal Article] Chlorophytum longissimum var. phukhaense (Asparagaceae), a new variety from Thailand2014

    • Author(s)
      Tamura, M. N. and Pooma, R.
    • Journal Title

      Acta Phytotaxonomica et Geobotanica

      Volume: 65 Pages: 25-28

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Taxonomic status and phylogeny of Veratrum section Veratrum (Melanthiaceae) in Korea and Japan based on chloroplast and nuclear sequence data2014

    • Author(s)
      Kim, J. O., Tamura, M. N., Fuse, S. and Lee, N. S.
    • Journal Title

      Plant Systematics and Evolution

      Volume: 300 Issue: 1 Pages: 75-89

    • DOI

      10.1007/s00606-013-0861-3

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Biosystematic studies on the family Tofieldiaceae IV. Taxonomy of Tofieldia coccinea in Japan and Korea including a new variety2013

    • Author(s)
      Tamura, M. N., Lee, N. S., Katsuyama, T. and Fuse, S.
    • Journal Title

      Acta Phytotaxonomica et Geobotanica

      Volume: 64 Pages: 29-40

    • NAID

      110009615076

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Peliosanthes brevicoronata (Asparagaceae), a new species from Thailand2013

    • Author(s)
      Tamura, M. N., Poopath, M. and Sirimongkol, S.
    • Journal Title

      Acta Phytotaxonomica et Geobotanica

      Volume: 64 Pages: 107-111

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Molecular phylogeny and taxonomy of the genus Disporum (Colchicaceae)2013

    • Author(s)
      Tamura, M. N., Yamada, M., Fuse, S. and Hotta, M.
    • Journal Title

      Acta Phytotaxonomica et Geobotanica

      Volume: 64 Pages: 137-147

    • NAID

      110009661541

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] New flavonol glycosides from the leaves of Triantha japonica and Tofieldia nuda2013

    • Author(s)
      Iwashina, T., Tamura, M. N., Murai, Y. and Kitajima, J.
    • Journal Title

      Natural Product Communications

      Volume: 8 Pages: 1251-1254

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] バナナの全ゲノム解析によって単子葉植物の系統はどこまでわかったか2013

    • Author(s)
      田村 実・工藤 洋
    • Journal Title

      遺伝

      Volume: 67 Pages: 601-605

    • Related Report
      2013 Research-status Report
  • [Journal Article] Population history of the terrestrial orchid Cremastra appendiculata var. variabilis from Korea, inferred from levels and distribution of genetic diversity2013

    • Author(s)
      Chung, M. Y., J. López-Pujol, M. -O. Moon, M. Maki, T. Yukawa, N. Sugiura and M. G. Chung
    • Journal Title

      Botanical Journal of the Linnean Society

      Volume: 173 Issue: 4 Pages: 721-732

    • DOI

      10.1111/boj.12109

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] ラン科セッコク属(Dendrobium)の分子系統情報とHPLCプロファイル情報を統合した潜在薬用資源の探索I2013

    • Author(s)
      高宮知子・鈴木俊一郎・北村早希・北中進・飯島洋・遊川知久
    • Journal Title

      DNA多型

      Volume: 21 Pages: 55-60

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Rad-seqデータと分岐年代推定が解き明かすチゴユリ属(イヌサフラン科)の進化史2016

    • Author(s)
      江口悟史・布施静香・手塚あゆみ・永野 惇・田村 実
    • Organizer
      日本植物分類学会第15回大会
    • Place of Presentation
      富山大学
    • Year and Date
      2016-03-06
    • Related Report
      2015 Annual Research Report
  • [Presentation] ケイビラン(クサスギカズラ科)の花の二型性について2016

    • Author(s)
      布施静香・福田 匠・田村 実
    • Organizer
      日本植物分類学会第15回大会
    • Place of Presentation
      富山大学
    • Year and Date
      2016-03-06
    • Related Report
      2015 Annual Research Report
  • [Presentation] エンシュウムヨウランの分類学的再検討2016

    • Author(s)
      高島路久・木下晃彦・太田峰夫・遊川知久
    • Organizer
      日本植物分類学会第15回大会
    • Place of Presentation
      富山大学
    • Year and Date
      2016-03-06
    • Related Report
      2015 Annual Research Report
  • [Presentation] Evolutionary history if Disporum (Liliales-Colchicaceae) inferred from RAD-seq data and divergence time estimation2016

    • Author(s)
      Eguchi, S.
    • Organizer
      Kyoto-Bristol-Heidelberg Plant Sciences Workshop, "Novel Frontiers in Botany"
    • Place of Presentation
      Kyoto University
    • Year and Date
      2016-03-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Phylogeny and taxonomy of Dioscorea (Dioscoreaceae) from Japan and other Asian regions2016

    • Author(s)
      Noda, H.
    • Organizer
      Kyoto-Bristol-Heidelberg Plant Sciences Workshop, "Novel Frontiers in Botany"
    • Place of Presentation
      Kyoto University
    • Year and Date
      2016-03-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Novel identification keys to the genera and species of Commelinaceae in Japan including native, introduced and ornamental plants2016

    • Author(s)
      Lee, C. K.
    • Organizer
      Kyoto-Bristol-Heidelberg Plant Sciences Workshop, "Novel Frontiers in Botany"
    • Place of Presentation
      Kyoto University
    • Year and Date
      2016-03-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Diversity and conservation status of Japanese indigenous orchids2015

    • Author(s)
      Yukawa, T., K. Suzuki and Y. Ogura-Tsujita
    • Organizer
      11th International Symposium on Diversity and Conservation of Asian Orchids
    • Place of Presentation
      National Institute of Ecology, Korea
    • Year and Date
      2015-12-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ラン科セッコク属の多様性解析に基づく薬用資源の探索2015

    • Author(s)
      曽根麻友美・藤原有紀子・町田智美・松本亮平・菊地秦平・清水玲子・吉野圭一・北中進・遊川知久・飯島洋・高宮知子
    • Organizer
      日本植物園協会第50回大会
    • Place of Presentation
      国立京都国際会館
    • Year and Date
      2015-06-25
    • Related Report
      2015 Annual Research Report
  • [Presentation] 菌従属栄養植物イリオモテムヨウランはカレエダタケ属「熱帯アジア分岐群」と特異的に共生する2015

    • Author(s)
      木下晃彦・阿部篤志・佐藤裕之・辻田有紀・遊川知久
    • Organizer
      日本菌学会第59回大会
    • Place of Presentation
      てんぶす那覇
    • Year and Date
      2015-05-15
    • Related Report
      2015 Annual Research Report
  • [Presentation] Fossilized Birth-Deathモデルを用いた単子葉植物の分岐年代推定2015

    • Author(s)
      江口悟史・田村 実
    • Organizer
      日本植物分類学会第14回大会
    • Place of Presentation
      福島大学
    • Year and Date
      2015-03-06
    • Related Report
      2014 Research-status Report
  • [Presentation] The Botanical Gardens of the Graduate School of Science at Kyoto University and a few examples of studies on plant systematics using the samples there2014

    • Author(s)
      Tamura, M. N.
    • Organizer
      Bristol-Kyoto Workshop on Plant Environmental Signalling
    • Place of Presentation
      University of Bristol, U.K.
    • Year and Date
      2014-09-25
    • Related Report
      2014 Research-status Report
  • [Presentation] ラン科シュンラン属の生活形・栄養、摂取様式の進化-12: 生活史ステージによる菌根菌シフトの種間比較2014

    • Author(s)
      木下晃彦・辻田有紀・遊川知久
    • Organizer
      日本植物学会第78回大会
    • Place of Presentation
      明治大学
    • Year and Date
      2014-09-12
    • Related Report
      2014 Research-status Report
  • [Presentation] Further notes on Liliaceae sensu lato in Thailand2014

    • Author(s)
      Tamura, M. N.
    • Organizer
      16th Flora of Thailand Conference
    • Place of Presentation
      Royal Botanic Gardens, Kew, U.K.
    • Year and Date
      2014-09-09
    • Related Report
      2014 Research-status Report
  • [Presentation] 屋久島の高山性ミニチュア植物ヒメコナスビの小型形態には遺伝的バックグラウンドが存在する

    • Author(s)
      掛澤明弘・田村 実・工藤 洋・篠原 渉
    • Organizer
      日本植物分類学会第13回大会
    • Place of Presentation
      熊本
    • Related Report
      2013 Research-status Report
  • [Presentation] Alpha taxonomy and beta taxonomy of Liliaceae: new genus, new species and new phylogenetic tree

    • Author(s)
      Tamura, M. N.
    • Organizer
      The 2nd Kyoto-Bristol Symposium: Session 11, “Plant Sciences”
    • Place of Presentation
      Kyoto
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Phylogeny and Taxonomy of Liliaceae

    • Author(s)
      Tamura, M. N.
    • Organizer
      International Symposium for “Biodiversity & Evolution” project of Excellent Graduate Schools
    • Place of Presentation
      Kyoto
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] ユリ科植物の系統分類学

    • Author(s)
      田村 実
    • Organizer
      近畿植物学会平成25年度講演会
    • Place of Presentation
      奈良
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 菌従属栄養植物の系統と進化

    • Author(s)
      遊川知久
    • Organizer
      日本植物学会第77回大会
    • Place of Presentation
      札幌
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 菌従属栄養植物オニノヤガラ属の菌根菌の多様性-1:オニノヤガラ属の核、色素体、ミトコンドリアゲノムの塩基配列情報に基づく系統関係

    • Author(s)
      遊川知久・堤千絵・辻田有紀・T.-C. Hsu・S.-W. Chung・馬田英隆
    • Organizer
      日本植物学会第77回大会
    • Place of Presentation
      札幌
    • Related Report
      2013 Research-status Report
  • [Book] Flora of Japan, vol.IVb. Angiospermae: Monocotyledoneae (b)2016

    • Author(s)
      Iwatsuki, K., Boufford, D. E. and Ohba, H. (eds.)
    • Total Pages
      335
    • Publisher
      Kodansha, Tokyo
    • Related Report
      2015 Annual Research Report
  • [Book] 日本の野生植物 改訂新版 22016

    • Author(s)
      大橋広好・門田裕一・邑田 仁・米倉浩司・木原 浩 (編)
    • Total Pages
      384
    • Publisher
      平凡社, 東京
    • Related Report
      2015 Annual Research Report
  • [Book] 日本の野生植物 改訂新版 12015

    • Author(s)
      大橋広好・門田裕一・邑田 仁・米倉浩司・木原 浩 (編)
    • Total Pages
      391
    • Publisher
      平凡社, 東京
    • Related Report
      2015 Annual Research Report
  • [Book] 絶滅危惧植物図鑑 レッドデータプランツ 増補改訂新版2015

    • Author(s)
      矢原徹一・藤井伸二・伊藤元己・海老原淳 (監修)
    • Total Pages
      782
    • Publisher
      山と渓谷社, 東京
    • Related Report
      2015 Annual Research Report
  • [Book] レッドデータブック2014 植物I(維管束植物)2015

    • Author(s)
      環境省 (編)
    • Total Pages
      646
    • Publisher
      ぎょうせい, 東京
    • Related Report
      2015 Annual Research Report
  • [Book] 日本のランハンドブック1 低地低山編2015

    • Author(s)
      遊川知久
    • Total Pages
      136
    • Publisher
      文一総合出版
    • Related Report
      2015 Annual Research Report
  • [Book] レッドデータプランツ増補改訂新版2015

    • Author(s)
      田村 実(監修:矢原徹一・藤井伸二・伊藤元己・海老原淳)
    • Total Pages
      782
    • Publisher
      山と渓谷社
    • Related Report
      2014 Research-status Report
  • [Book] ウォッチング日本の固有植物2014

    • Author(s)
      遊川知久(編:岩科 司・海老原淳)
    • Total Pages
      142
    • Publisher
      東海大学出版会
    • Related Report
      2014 Research-status Report
  • [Book] The genus Calanthe2013

    • Author(s)
      Yukawa, T. In: Clayton, D. and Cribb, P. J. (eds.)
    • Total Pages
      411
    • Publisher
      Natural History Publications and Royal Botanic Gardens, Kew
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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