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Problems in Estimating Divergence Times

Research Project

Project/Area Number 25440219
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biodiversity/Systematics
Research InstitutionThe Institute of Statistical Mathematics

Principal Investigator

Hasegawa Masami  統計数理研究所, 統計思考院, 名誉教授 (60011657)

Co-Investigator(Kenkyū-buntansha) ADACHI JUN  統計数理研究所, データ科学研究系, 准教授 (30370092)
Co-Investigator(Renkei-kenkyūsha) YONEZAWA TAKAHIRO  復旦大学, 生命科学学院, 副教授 (90508566)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords分岐年代推定 / 分子系統学 / 古顎類 / エピオルニス / 古代DNA解析 / ゴンドワナ超大陸 / エピオルニス科 / 分岐年代 / 二ホンツキノワグマ / アジアクロクマ / 真獣類 / 古代DNA / 種サンプリング密度 / ベイズ法 / ロバストな推定 / ゲノム / 化石証拠 / 年代制約
Outline of Final Research Achievements

Palaeognathae including ostiches, emus, rheas and tinamous is believed to have originated in Gondwana-derived continents. We recovered nuclear genome fragments as well as mitochondrial genomes from extinct elephant birds of Madagascar, and reconstructed a robust phylogenomic time-tree for Palaeognathae. In contrast to the prevailing theories, our tree based on morphological characters free from convergence placed the fossil paleognths from the Northern Hemisphere as the basal lineage. Such molecular and morphological evidence strongly suggests the Northern Hemisphere origin of Palaeognathae. They were probably flying birds, as estimated by the mitochondrial substitution rate, and migrated to the Southern Hemisphere and explosively speciated around the Cretaceous-Paleogene boundary. They then extended their distribution to the Gondwana-derived landmasses by the overseas dispersal, and gigantism subsequently occurred independently on each landmass.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (9 results)

All 2016 2015 2014 2013 Other

All Int'l Joint Research (1 results) Journal Article (7 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 7 results,  Open Access: 4 results,  Acknowledgement Compliant: 4 results) Book (1 results)

  • [Int'l Joint Research] 復旦大学生命科学学院(中国)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Cretaceous origin of the giant rhinoceros beetles (Dynastini; Coleoptera) and the correlation of their evolution with Pangean breakup2016

    • Author(s)
      Haofei Jin, Takahiro Yonezawa, Yang Zhong, Hirohisa Kishino, Masami Hasegawa
    • Journal Title

      Genes & Genetic Systems

      Volume: 0 Pages: 0-0

    • NAID

      130005450123

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Phylogeographic and demographic analysis of the Asian black bear (Ursus thibetanus) based on mitochondrial DNA2015

    • Author(s)
      Jiaqi Wu, Naoki Kohno, Shuhei Mano, Yukio Fukumoto, Hideyuki Tanabe, Masami Hasegawa, Takahiro Yonezawa
    • Journal Title

      PLoS One

      Volume: 10 (9) Issue: 9 Pages: e0136398-e0136398

    • DOI

      10.1371/journal.pone.0136398

    • NAID

      120006667793

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Importance of synonymous substitutions under dense taxon sampling and appropriate modeling in reconstructing the mitogenomic tree of Eutheria2014

    • Author(s)
      Wu, J., Hasegawa, M., Zhong, Y., Yonezawa, T.
    • Journal Title

      Genes & Genetic Systems

      Volume: 89 Issue: 5 Pages: 237-251

    • DOI

      10.1266/ggs.89.237

    • NAID

      130005060734

    • ISSN
      1341-7568, 1880-5779
    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Polyphyletic origins of schizothoracine fish (Cyprinidae, Osteichthyes) and adaptive evolution in their mitochondrial genomes2014

    • Author(s)
      Yonezawa, T., Hasegawa, M., Zhong, Y.,
    • Journal Title

      Genes & Genetic Systems

      Volume: 89 Issue: 4 Pages: 187-191

    • DOI

      10.1266/ggs.89.187

    • NAID

      130004750048

    • ISSN
      1341-7568, 1880-5779
    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Extreme nearly neutral evolution in mitochondrial genomes of laboratory mouse strains2014

    • Author(s)
      T. Yonezawa, M. Hasegawa
    • Journal Title

      Gene

      Volume: 534 Issue: 2 Pages: 444-338

    • DOI

      10.1016/j.gene.2013.08.022

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Ancestral polymorphisms and sex-biased migration shaped the demographic history of brown bears and polar bears2013

    • Author(s)
      Shigeki Nakagome
    • Journal Title

      PLOS ONE

      Volume: 8(11): e78813 Issue: 11 Pages: 1-7

    • DOI

      10.1371/journal.pone.0078813

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Domestication process of the goat revealed by an analysis of the nearly complete mitochondrial protein-encoding genes2013

    • Author(s)
      K. Nomura, T. Yonezawa, S. Mano, S. Kawakami, A.M. Shedlock, M. Hasegawa, T. Amano
    • Journal Title

      PLoS One

      Volume: 8 (8) Issue: 8 Pages: e67775-e67775

    • DOI

      10.1371/journal.pone.0067775

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Book] 系統樹をさかのぼって見えてくる進化の歴史2014

    • Author(s)
      長谷川政美
    • Total Pages
      192
    • Publisher
      ベレ出版
    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-07-25   Modified: 2019-07-29  

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