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Coordinated regulation of the chitin-degradation and utilization system by small RNA in bacteria

Research Project

Project/Area Number 25450097
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Applied microbiology
Research InstitutionNiigata University

Principal Investigator

Suzuki Kazushi  新潟大学, 自然科学系, 准教授 (00444183)

Co-Investigator(Renkei-kenkyūsha) WATANABE Takeshi  新潟大学, 自然科学系, 教授 (10201203)
MIYAMOTO Katushiro  大阪薬科大学, 薬学部, 准教授 (40231625)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2013: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Keywords遺伝子発現 / small RNA / キチナーゼ / 応用微生物学
Outline of Final Research Achievements

Small RNA ChiX was expressed constitutively and repressed the translational initiation of chiR mRNA, encoding the transcriptional factor for the expression of chitin-degrading enzymes, by base paring in Serratia marcescens. When the chiPQ-ctb operon, encoding chitoporin and chitobiase, was fully expressed by degradation products of chitin, ChiX bound to the chiP mRNA. Base pairing between ChiX and the chiP mRNA relieved repression on the translational initiation of the chiR mRNA. Thus, the expressed ChiR activated the production of chitin-degrading enzymes. ChiX coordinates the synchronized expression of chitin-degrading enzymes and the system for incorporating chitin degradation products.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (21 results)

All 2016 2015 2014 Other

All Journal Article (3 results) (of which Peer Reviewed: 2 results,  Open Access: 1 results) Presentation (16 results) (of which Int'l Joint Research: 3 results) Remarks (2 results)

  • [Journal Article] Regulation of the chitin degradation and utilization system by the ChiX small RNA in Serratia marcescens 21702016

    • Author(s)
      K. Suzuki, M. Shimizu, N. Sasaki, C. Ogawa, H. Minami, H. Sugimoto, and T. Watanabe
    • Journal Title

      Biosci. Biotechnol. Biochem.

      Volume: 80 Issue: 2 Pages: 376-385

    • DOI

      10.1080/09168451.2015.1083399

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Construction and basic characterization of deletion mutants of the genes involved in chitin utilization by Serratia marcescens 21702014

    • Author(s)
      Shinya Takanao, Syouta Honma, Takuma Miura, Chisana Ogawa, Hayuki Sugimoto, Kazushi Suzuki and Takeshi Watanabe
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 印刷中

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Serratia marcescensのキチン分解利用機構2014

    • Author(s)
      渡邉剛志、杉本華幸、鈴木一史
    • Journal Title

      キチン・キトサン研究

      Volume: 20 Pages: 4-15

    • NAID

      40020056084

    • Related Report
      2013 Research-status Report
  • [Presentation] 小分子 RNA・ChiX による chiR 発現抑制とその解除2016

    • Author(s)
      鈴木 一史、南 晴香、山岸 拓矢、小川 知佐奈、佐々木 直美、杉本 華幸、渡邉 剛志
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌コンベンションセンター(北海道札幌市白石区)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Annual Research Report
  • [Presentation] Small RNA ChiX による 2 種の標的 mRNA の発現制御機構2016

    • Author(s)
      南 晴香、鈴木 一史、佐々木 直美、山岸 拓矢、杉本 華幸、渡邉 剛志
    • Organizer
      第10回日本ゲノム微生物学会年会
    • Place of Presentation
      東京工業大学(東京都目黒区)
    • Year and Date
      2016-03-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] Regulation of chitinase system by small RNA in Serratia marcescens2016

    • Author(s)
      Kazushi Suzuki, Hayuki Sugimoto, and Takeshi Watanabe
    • Organizer
      The 6th International Symposium for theDevelopment of Integrated Pest Management (IPM) for sustainable agriculture in Asia and Africa
    • Place of Presentation
      新潟大学(新潟県新潟市)
    • Year and Date
      2016-03-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Chitin degradation and utilization system regulated by small RNA in Serratia marcescens2015

    • Author(s)
      Kazushi Suzuki, Haruka Minami, Chisana Ogawa, Naomi Sasaki, Mari Shimizu, Shinya Takano, Hayuki Sugimoto, and Takeshi Watanabe
    • Organizer
      KAAB International Symposium 2015
    • Place of Presentation
      新潟大学(新潟県新潟市)
    • Year and Date
      2015-09-29
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Role of small RNA in chitin degradation and utilization system of Serratia marcescens2015

    • Author(s)
      Kazushi Suzuki, Haruka Minami, Chisana Ogawa, Naomi Sasaki, Mari Shimizu, Shinya Takano, Hayuki Sugimoto, and Takeshi Watanabe
    • Organizer
      The 5th Asian Conference on Green Technology in Agriculture
    • Place of Presentation
      Holiday Garden Hotel and Resort (Chiang Mai, Thailand)
    • Year and Date
      2015-07-19
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Serratia marcescensにおける小分子RNA ChiXを介したchiR及びchiPQ-ctbの発現制御2015

    • Author(s)
      鈴木一史、南晴香、小川知佐奈、佐々木直美、杉本華幸、渡邉剛志
    • Organizer
      第17回日本RNA学会年会
    • Place of Presentation
      ホテルライフォート札幌(北海道札幌市中央区)
    • Year and Date
      2015-07-15
    • Related Report
      2015 Annual Research Report
  • [Presentation] Chitin degradation and utilization system of Serratia marcescens 2170. ---Role and regulation of the chiPQ-ctb operon---2014

    • Author(s)
      T. Watanabe, T. Miura, H. Minami, C. Ogawa, S. Honma, H. Sugimoto, and K. Suzuki.
    • Organizer
      MIE BIOFORUM 2014 -Lignocellulose Degradation and Biorefinery-
    • Place of Presentation
      Nemuno Sato Hotel & Resort, Shima, Mie, Japan
    • Year and Date
      2014-11-19 – 2014-11-20
    • Related Report
      2014 Research-status Report
  • [Presentation] Serratia marcescensにおけるキチン分解産物の取り込みとsmall RNAによるキチナーゼ発現制御2014

    • Author(s)
      鈴木一史、小川知佐奈、 南晴香、 杉本華幸、渡邉剛志
    • Organizer
      第28回キチンキトサンシンンポジウム
    • Place of Presentation
      順天堂大学(東京都文京区)
    • Year and Date
      2014-08-08
    • Related Report
      2014 Research-status Report
  • [Presentation] Serratia marcescens 2170 のキチン分解利用機構 -chiPQ-ctbオペロンの機能解析-2014

    • Author(s)
      三浦拓馬、本間祥太、杉本華幸、鈴木一史、渡邉剛志
    • Organizer
      第28回キチンキトサンシンンポジウム
    • Place of Presentation
      順天堂大学(東京都文京区)
    • Year and Date
      2014-08-07 – 2014-08-08
    • Related Report
      2014 Research-status Report
  • [Presentation] 細菌のキチナーゼとキチン分解利用機構2014

    • Author(s)
      渡邉剛志、杉本華幸、鈴木一史
    • Organizer
      第28回キチンキトサンシンンポジウム
    • Place of Presentation
      順天堂大学(東京都文京区)
    • Year and Date
      2014-08-07
    • Related Report
      2014 Research-status Report
  • [Presentation] Small RNA ChiXが制御するSerratia marcescensキチン分解利用系の解析2014

    • Author(s)
      鈴木一史、南晴香、小川知佐奈、佐々木直美、杉本華幸、渡邉剛志
    • Organizer
      第16回日本RNA学会年会
    • Place of Presentation
      ウインクあいち(愛知県名古屋市)
    • Year and Date
      2014-07-23 – 2014-07-24
    • Related Report
      2014 Research-status Report
  • [Presentation] Coordinate regulation of the chitin degradation and utilization system by small RNA in Serratia marcescens

    • Author(s)
      K. Suzuki, M. Shimizu, C. Ogawa, N. Sasaki, S. Takano, H. Sugimoto, and T. Watanabe
    • Organizer
      American Society for Microbiology 113th General Meeting
    • Place of Presentation
      Colorado Convention Center (Denver, Colorado, USA)
    • Related Report
      2013 Research-status Report
  • [Presentation] Regulation of chitin degradation and utilization system by ChiX small RNA in Serratia marcescens

    • Author(s)
      K. Suzuki, N. Sasaki, C. Ogawa, M. Shimizu, S. Takano, H. Sugimoto, and T. Watanabe
    • Organizer
      10th Asia-Pacific Chitin and Chitosan Symposium / 27th Japanese Chitin and Chitosan Symposium
    • Place of Presentation
      米子コンベンションセンター(鳥取県米子市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Chitin degradation and utilization system of Serratia marcescens 2170

    • Author(s)
      T. Watanabe, H. Sugimoto, and K. Suzuki
    • Organizer
      10th Asia-Pacific Chitin and Chitosan Symposium / 27th Japanese Chitin and Chitosan Symposium
    • Place of Presentation
      米子コンベンションセンター(鳥取県米子市)
    • Related Report
      2013 Research-status Report
  • [Presentation] small RNAを介したSerratia marcescensキチン分解利用系制御へのNagC及びChbRの関与

    • Author(s)
      鈴木 一史、小川 知佐奈、南 晴香、杉本 華幸、渡邉 剛志
    • Organizer
      日本農芸化学会2014年度大会
    • Place of Presentation
      明治大学生田キャンパス(神奈川県川崎市多摩区)
    • Related Report
      2013 Research-status Report
  • [Presentation] Serratia marcescens 2170のキチン分解利用機構 -chiPQ-ctbオペロンの機能-

    • Author(s)
      三浦 拓馬、今井 裕也、小川 知佐奈、杉本 華幸、鈴木 一史、渡邉 剛志
    • Organizer
      日本農芸化学会2014年度大会
    • Place of Presentation
      明治大学生田キャンパス(神奈川県川崎市多摩区)
    • Related Report
      2013 Research-status Report
  • [Remarks] 新潟大学農学部 応用微生物学研究室ホームページ

    • URL

      http://www.agr.niigata-u.ac.jp/~ksuzuki/ApplMicro/Welcome.html

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
  • [Remarks] 新潟大学農学部 応用微生物学研究室ホームページ

    • URL

      http://www.agr.niigata-u.ac.jp/~ksuzuki/ApplMicro/Welcome.html

    • Related Report
      2013 Research-status Report

URL: 

Published: 2014-07-25   Modified: 2019-07-29  

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