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Microbial loop in anoxic environments: Ecology and physiology of anaerobic heterotrophic nanoflagellates

Research Project

Project/Area Number 25450261
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Aquatic bioproduction science
Research InstitutionFukui Prefectural University

Principal Investigator

KONDO Ryuji  福井県立大学, 海洋生物資源学部, 教授 (30244528)

Co-Investigator(Kenkyū-buntansha) NAKANO Shin-ichi  京都大学, 生態学研究センター, 教授 (50270723)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords従属栄養性微小鞭毛虫 / 嫌気 / 密度成層湖 / 微生物食物網 / 細菌摂食 / 鞭毛虫 / 細菌捕食
Outline of Final Research Achievements

A facultative anaerobic bacterivorous nanoflagellate was isolated from the oxic-anoxic interface of the meromictic Lake Suigetsu, Japan. We characterized the isolate using light and transmission electron microscopy and molecular phylogenetic analyses. The isolate displayed some characteristic features different from the known species in class Placididea. The 18S rDNA sequence was also phylogenetically distant from the clades of the known Placididae. Thus, we described the newly isolate as Suigetsumonas clinomigrationis gen. et sp. nov. Growth and grazing kinetics were studied in the strain using co-culture experiments with a single bacterium. The growth and bacterivorous characteristics showed that the isolate can grow at full depth of Lake Suigetsu throughout year, but may be limited by prey bacterial densities in natural environments. High abundance of S. clinomigrationis was detected from the interface of Lake Suigetsu by means of CARD-FISH with the species-specific probe.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (19 results)

All 2015 2014 2013 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (13 results) Book (1 results)

  • [Journal Article] Use of stable isotope probing to identify bacterial species involved in CO<sub>2</sub> fixation in the water just below the oxycline of the meromictic Lake Suigetsu, Japan2015

    • Author(s)
      Mori Y, Kataoka T, Kondo R
    • Journal Title

      Plankton and Benthos Research

      Volume: 10 Issue: 2 Pages: 111-120

    • DOI

      10.3800/pbr.10.111

    • NAID

      130005076203

    • ISSN
      1880-8247, 1882-627X
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Suigetsumonas clinomigrationis gen. et sp. nov., a novel facultative anaerobic nanoflagellate isolated from the meromictic Lake Suigetsu, Japan2015

    • Author(s)
      Okamura T, Kondo R
    • Journal Title

      Protist

      Volume: 166 Issue: 4 Pages: 409-421

    • DOI

      10.1016/j.protis.2015.06.003

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Dominance of green sulfur bacteria in the chemocline of the meromictic Lake Suigetsu, Japan as revealed by dissimilatory sulfite reductase gene analysis2014

    • Author(s)
      Y. Mori, T. Kataoka, T. Okamura and R. Kondo
    • Journal Title

      Archives of Microbiology

      Volume: 195 Issue: 5 Pages: 303-312

    • DOI

      10.1007/s00203-013-0879-5

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Spatiotemporal distribution of bacteriochlorophylls in the meromictic Lake Suigetsu, Japan2014

    • Author(s)
      Ryuji Kondo, Misa Kodera, Yumi Mari, Takahiko Okamura, Shinya Yo shikawa, Kaori Ohki
    • Journal Title

      Limnology

      Volume: 15 Issue: 1 Pages: 77-83

    • DOI

      10.1007/s10201-013-0415-y

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] PCR primers for selective detection of intra-species variations in the bloom-forming cyanobacterium, Microcystis2013

    • Author(s)
      T. Kataoka, T. Homma, S. Nakano, Y. Hodoki, K. Ohbayashi and R. Kondo
    • Journal Title

      Harmful Algae

      Volume: 23 Pages: 46-54

    • DOI

      10.1016/j.hal.2012.12.003

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] 通性嫌気性鞭毛虫Suigetsumonas clinomigrationisの微細構造と増殖生理2015

    • Author(s)
      近藤竜二、岡村嵩彦
    • Organizer
      日本微生物生態学会第30回大会
    • Place of Presentation
      土浦市(亀城プラザ)
    • Year and Date
      2015-10-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] High abundance of heterotrophic nanoflagellates in the oxic-anoxic interface of meromictic Lake Suigetsu, Japan2015

    • Author(s)
      Mukherjee I, Takahiko Okamura T, Nakno S, Kondo R
    • Organizer
      日本微生物生態学会第30回大会
    • Place of Presentation
      土浦市(亀城プラザ)
    • Year and Date
      2015-10-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] 北西太平洋表層水における微細藻類の捕食に伴うクロロフィル代謝2015

    • Author(s)
      四本木彰良、近藤竜二、野牧秀隆、柏山祐一郎
    • Organizer
      藻類学会第39回大会
    • Place of Presentation
      九州大学
    • Year and Date
      2015-03-22
    • Related Report
      2014 Research-status Report
  • [Presentation] 水月湖から分離した新規嫌気性微小鞭毛虫:Ⅰ 生理学的特徴2014

    • Author(s)
      岡村嵩彦、近藤竜二
    • Organizer
      平成26年度日本水産学会秋季大会
    • Place of Presentation
      九州大学
    • Year and Date
      2014-09-20
    • Related Report
      2014 Research-status Report
  • [Presentation] 水月湖から分離した新規嫌気性微小鞭毛虫:Ⅱ 微細構造と系統解析2014

    • Author(s)
      岡村嵩彦、近藤竜二
    • Organizer
      平成26年度日本水産学会秋季大会
    • Place of Presentation
      九州大学
    • Year and Date
      2014-09-20
    • Related Report
      2014 Research-status Report
  • [Presentation] 水月湖の酸化還元境界層における緑色硫黄細菌の生態学的役割

    • Author(s)
      森 裕美、近藤竜二
    • Organizer
      日本地球惑星科学連合2013年大会
    • Place of Presentation
      幕張メッセ国際会議場(千葉市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 嫌気性微小鞭毛虫の分離と性状

    • Author(s)
      岡村嵩彦、近藤竜二
    • Organizer
      平成25年度日本水産学会秋季大会
    • Place of Presentation
      三重大学(津市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 水月湖酸化還元境界層における一次生産者の群集構造解析

    • Author(s)
      森 裕美、近藤竜二
    • Organizer
      第29回日本微生物生態学会大会
    • Place of Presentation
      鹿児島大学(鹿児島市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 嫌気性微小鞭毛虫の分離培養とその性状

    • Author(s)
      岡村嵩彦、近藤竜二
    • Organizer
      第29回日本微生物生態学会大会
    • Place of Presentation
      鹿児島大学(鹿児島市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 富栄養化淡水湖沼、北浦のanammox活性が高い地点でのanammox活性垂直分布と微生物群集構造

    • Author(s)
      池田拓哉、近藤竜二、森 裕美、勝山千恵、山岸昴夫、上田眞吾、吉永郁生、諏訪祐一
    • Organizer
      第29回日本微生物生態学会大会
    • Place of Presentation
      鹿児島大学(鹿児島市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Ecological properties of newly isolated anaerobic heterotrophic nanoflagellate strains

    • Author(s)
      Okamura T, Kondo R
    • Organizer
      First EMBO Conference on Aquatic Microbial Ecology: SAME13
    • Place of Presentation
      Stresa, Italy
    • Related Report
      2013 Research-status Report
  • [Presentation] Isolation and cultivation of anaerobic heterotrophic nanoflagellate from the meromictic Lake Suigetsu, Japan

    • Author(s)
      Kondo R, Okamura T
    • Organizer
      First EMBO Conference on Aquatic Microbial Ecology: SAME13
    • Place of Presentation
      Stresa, Italy
    • Related Report
      2013 Research-status Report
  • [Presentation] Isolation and characterization of anaerobic heterotrophic nanoflagellates from the meromictic Lake Suigetsu, Japan

    • Author(s)
      Okamura T, Kondo R
    • Organizer
      Big Microbes: CER International workshop on ecology for young scientists
    • Place of Presentation
      京都大学生態学研究センター(大津市)
    • Related Report
      2013 Research-status Report
  • [Book] 環境と微生物の事典2014

    • Author(s)
      近藤竜二 ほか
    • Total Pages
      432
    • Publisher
      朝倉書店
    • Related Report
      2014 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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